{"id":"https://openalex.org/W3034046925","doi":"https://doi.org/10.1109/jbhi.2020.2999638","title":"Deep Matrix Factorization Improves Prediction of Human CircRNA-Disease Associations","display_name":"Deep Matrix Factorization Improves Prediction of Human CircRNA-Disease Associations","publication_year":2020,"publication_date":"2020-06-03","ids":{"openalex":"https://openalex.org/W3034046925","doi":"https://doi.org/10.1109/jbhi.2020.2999638","mag":"3034046925","pmid":"https://pubmed.ncbi.nlm.nih.gov/32750925"},"language":"en","primary_location":{"id":"doi:10.1109/jbhi.2020.2999638","is_oa":false,"landing_page_url":"https://doi.org/10.1109/jbhi.2020.2999638","pdf_url":null,"source":{"id":"https://openalex.org/S2495854775","display_name":"IEEE Journal of Biomedical and Health Informatics","issn_l":"2168-2194","issn":["2168-2194","2168-2208"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Journal of Biomedical and Health Informatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5065367210","display_name":"Chengqian Lu","orcid":"https://orcid.org/0000-0001-9201-6912"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Chengqian Lu","raw_affiliation_strings":["School of Computer Science and Engineering, Central South University, Changsha, China"],"raw_orcid":"https://orcid.org/0000-0001-9201-6912","affiliations":[{"raw_affiliation_string":"School of Computer Science and Engineering, Central South University, Changsha, China","institution_ids":["https://openalex.org/I139660479"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033885404","display_name":"Min Zeng","orcid":"https://orcid.org/0000-0002-1726-0955"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Min Zeng","raw_affiliation_strings":["School of Computer Science and Engineering, Central South University, Changsha, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Engineering, Central South University, Changsha, China","institution_ids":["https://openalex.org/I139660479"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032947862","display_name":"Fuhao Zhang","orcid":"https://orcid.org/0000-0002-5339-0714"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Fuhao Zhang","raw_affiliation_strings":["School of Computer Science and Engineering, Central South University, Changsha, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Engineering, Central South University, Changsha, China","institution_ids":["https://openalex.org/I139660479"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091157395","display_name":"Fang\u2010Xiang Wu","orcid":"https://orcid.org/0000-0002-4593-9332"},"institutions":[{"id":"https://openalex.org/I32625721","display_name":"University of Saskatchewan","ror":"https://ror.org/010x8gc63","country_code":"CA","type":"education","lineage":["https://openalex.org/I32625721"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Fang-Xiang Wu","raw_affiliation_strings":["Division of Biomedical Engineering, University of Saskatchewan, Saskatoon, SK, Canada"],"raw_orcid":"https://orcid.org/0000-0002-4593-9332","affiliations":[{"raw_affiliation_string":"Division of Biomedical Engineering, University of Saskatchewan, Saskatoon, SK, Canada","institution_ids":["https://openalex.org/I32625721"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100719013","display_name":"Min Li","orcid":"https://orcid.org/0000-0002-0188-1394"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Min Li","raw_affiliation_strings":["School of Computer Science and Engineering, Central South University, Changsha, China"],"raw_orcid":"https://orcid.org/0000-0002-0188-1394","affiliations":[{"raw_affiliation_string":"School of Computer Science and Engineering, Central South University, Changsha, China","institution_ids":["https://openalex.org/I139660479"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100438360","display_name":"Jianxin Wang","orcid":"https://orcid.org/0000-0003-1516-0480"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jianxin Wang","raw_affiliation_strings":["Hunan Provincial Key Lab on Bioinformatics, Central South University, Changsha, China","School of Computer Science and Engineering, Central South University, Changsha, China"],"raw_orcid":"https://orcid.org/0000-0003-1516-0480","affiliations":[{"raw_affiliation_string":"Hunan Provincial Key Lab on Bioinformatics, Central South University, Changsha, China","institution_ids":["https://openalex.org/I139660479"]},{"raw_affiliation_string":"School of Computer Science and Engineering, Central South University, Changsha, China","institution_ids":["https://openalex.org/I139660479"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":3.9512,"has_fulltext":false,"cited_by_count":101,"citation_normalized_percentile":{"value":0.95126818,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":100},"biblio":{"volume":"25","issue":"3","first_page":"891","last_page":"899"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11765","display_name":"Circular RNAs in diseases","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11765","display_name":"Circular RNAs in diseases","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10062","display_name":"MicroRNA in disease regulation","score":0.9958000183105469,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6875316500663757},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5139784216880798},{"id":"https://openalex.org/keywords/matrix-decomposition","display_name":"Matrix decomposition","score":0.4987485408782959},{"id":"https://openalex.org/keywords/grasp","display_name":"GRASP","score":0.4312611222267151},{"id":"https://openalex.org/keywords/disease","display_name":"Disease","score":0.4301123023033142},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.42492857575416565},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.37960028648376465},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3330804705619812},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.15364089608192444},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.11925846338272095},{"id":"https://openalex.org/keywords/pathology","display_name":"Pathology","score":0.09042900800704956}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6875316500663757},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5139784216880798},{"id":"https://openalex.org/C42355184","wikidata":"https://www.wikidata.org/wiki/Q1361088","display_name":"Matrix decomposition","level":3,"score":0.4987485408782959},{"id":"https://openalex.org/C171268870","wikidata":"https://www.wikidata.org/wiki/Q1486676","display_name":"GRASP","level":2,"score":0.4312611222267151},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.4301123023033142},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.42492857575416565},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.37960028648376465},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3330804705619812},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.15364089608192444},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.11925846338272095},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.09042900800704956},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C158693339","wikidata":"https://www.wikidata.org/wiki/Q190524","display_name":"Eigenvalues and eigenvectors","level":2,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000079962","descriptor_name":"RNA, Circular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000079962","descriptor_name":"RNA, Circular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000079962","descriptor_name":"RNA, Circular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005544","descriptor_name":"Forecasting","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005544","descriptor_name":"Forecasting","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005544","descriptor_name":"Forecasting","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012107","descriptor_name":"Research Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012107","descriptor_name":"Research Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012107","descriptor_name":"Research Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1109/jbhi.2020.2999638","is_oa":false,"landing_page_url":"https://doi.org/10.1109/jbhi.2020.2999638","pdf_url":null,"source":{"id":"https://openalex.org/S2495854775","display_name":"IEEE Journal of Biomedical and Health Informatics","issn_l":"2168-2194","issn":["2168-2194","2168-2208"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Journal of Biomedical and Health Informatics","raw_type":"journal-article"},{"id":"pmid:32750925","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/32750925","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE journal of biomedical and health informatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G4066238608","display_name":null,"funder_award_id":"B18059","funder_id":"https://openalex.org/F4320327912","funder_display_name":"Higher Education Discipline Innovation Project"},{"id":"https://openalex.org/G4126902417","display_name":null,"funder_award_id":"61972423","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320321471","display_name":"Hunan Provincial Science and Technology Department","ror":"https://ror.org/04qgr7x96"},{"id":"https://openalex.org/F4320327912","display_name":"Higher Education Discipline Innovation Project","ror":null}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":66,"referenced_works":["https://openalex.org/W1521279639","https://openalex.org/W1565746575","https://openalex.org/W1963592300","https://openalex.org/W1975909559","https://openalex.org/W2017919052","https://openalex.org/W2031593782","https://openalex.org/W2055920203","https://openalex.org/W2058835062","https://openalex.org/W2072871705","https://openalex.org/W2095799789","https://openalex.org/W2101409192","https://openalex.org/W2101802482","https://openalex.org/W2115662330","https://openalex.org/W2119412782","https://openalex.org/W2136189984","https://openalex.org/W2137691989","https://openalex.org/W2153579005","https://openalex.org/W2159583324","https://openalex.org/W2163605009","https://openalex.org/W2194775991","https://openalex.org/W2209200250","https://openalex.org/W2422847636","https://openalex.org/W2488747960","https://openalex.org/W2556839614","https://openalex.org/W2558586574","https://openalex.org/W2572935411","https://openalex.org/W2586427318","https://openalex.org/W2602188454","https://openalex.org/W2605350416","https://openalex.org/W2618530766","https://openalex.org/W2740920897","https://openalex.org/W2750900465","https://openalex.org/W2755990621","https://openalex.org/W2772618228","https://openalex.org/W2783169572","https://openalex.org/W2790953059","https://openalex.org/W2794616841","https://openalex.org/W2801501532","https://openalex.org/W2804622884","https://openalex.org/W2805934763","https://openalex.org/W2806862424","https://openalex.org/W2807602500","https://openalex.org/W2842676593","https://openalex.org/W2893483035","https://openalex.org/W2893792076","https://openalex.org/W2895679848","https://openalex.org/W2898991725","https://openalex.org/W2899436082","https://openalex.org/W2906953716","https://openalex.org/W2909637325","https://openalex.org/W2917695714","https://openalex.org/W2919115771","https://openalex.org/W2926941577","https://openalex.org/W2948726969","https://openalex.org/W2956147320","https://openalex.org/W2972172091","https://openalex.org/W2980767508","https://openalex.org/W3000082418","https://openalex.org/W3001156376","https://openalex.org/W3025843079","https://openalex.org/W4294170691","https://openalex.org/W6644371986","https://openalex.org/W6675255137","https://openalex.org/W6682691769","https://openalex.org/W6722996805","https://openalex.org/W6777148091"],"related_works":["https://openalex.org/W2163296013","https://openalex.org/W2743859443","https://openalex.org/W2326995835","https://openalex.org/W165915117","https://openalex.org/W2059402478","https://openalex.org/W2123347777","https://openalex.org/W4387804363","https://openalex.org/W2019547100","https://openalex.org/W2477150073","https://openalex.org/W2515493494"],"abstract_inverted_index":{"In":[0,90],"recent":[1],"years,":[2],"more":[3,5],"and":[4,23,37,67,80,114,132,160,189],"evidence":[6],"indicates":[7],"that":[8,169,203],"circular":[9],"RNAs":[10],"(circRNAs)":[11],"with":[12],"covalently":[13],"closed":[14],"loop":[15],"play":[16],"various":[17,186],"roles":[18],"in":[19,30,55,185],"biological":[20],"processes.":[21],"Dysregulation":[22],"mutation":[24],"of":[25,85,130,149,155,181],"circRNAs":[26,41,66,131],"may":[27],"be":[28,46],"implicated":[29],"diseases.":[31,68,133],"Due":[32],"to":[33,39,45,105,125,144,176,197],"its":[34],"stable":[35],"structure":[36,148],"resistance":[38],"degradation,":[40],"provide":[42],"great":[43],"potential":[44,107],"diagnostic":[47],"biomarkers.":[48],"Therefore,":[49],"predicting":[50],"circRNA-disease":[51,108,173],"associations":[52,64,143,174,184],"is":[53],"helpful":[54],"disease":[56],"diagnosis.":[57],"However,":[58],"there":[59],"are":[60,87],"few":[61],"experimentally":[62],"validated":[63],"between":[65],"Although":[69],"several":[70],"computational":[71],"methods":[72],"have":[73],"been":[74],"proposed,":[75],"precisely":[76,182],"representing":[77],"underlying":[78],"features":[79],"grasping":[81],"the":[82,141,146,153,179],"complex":[83,147],"structures":[84],"data":[86],"still":[88],"challenging.":[89],"this":[91],"paper,":[92],"we":[93],"design":[94],"a":[95,122],"new":[96],"method,":[97],"called":[98],"DMFCDA":[99,110,138,156,170,204],"(Deep":[100],"Matrix":[101],"Factorization":[102],"CircRNA-Disease":[103],"Association),":[104],"infer":[106],"associations.":[109],"takes":[111],"both":[112],"explicit":[113],"implicit":[115],"feedback":[116],"into":[117],"account.":[118],"Then,":[119],"it":[120],"uses":[121],"projection":[123],"layer":[124],"automatically":[126],"learn":[127],"latent":[128],"representations":[129],"With":[134],"multi-layer":[135],"neural":[136],"networks,":[137],"can":[139],"model":[140],"non-linear":[142],"grasp":[145],"data.":[150],"We":[151,192],"assess":[152],"performance":[154],"using":[157],"leave-one":[158],"cross-validation":[159,162],"5-fold":[161],"on":[163],"two":[164],"datasets.":[165],"Computational":[166],"results":[167,201],"show":[168,202],"efficiently":[171],"infers":[172],"according":[175],"AUC":[177],"values,":[178],"percentage":[180],"retrieved":[183],"top":[187],"ranks,":[188],"statistical":[190],"comparison.":[191],"also":[193],"conduct":[194],"case":[195],"studies":[196],"evaluate":[198],"DMFCDA.":[199],"All":[200],"provides":[205],"accurate":[206],"predictions.":[207]},"counts_by_year":[{"year":2026,"cited_by_count":7},{"year":2025,"cited_by_count":20},{"year":2024,"cited_by_count":21},{"year":2023,"cited_by_count":16},{"year":2022,"cited_by_count":22},{"year":2021,"cited_by_count":13},{"year":2020,"cited_by_count":2}],"updated_date":"2026-07-22T07:51:19.307946","created_date":"2025-10-10T00:00:00"}
