{"id":"https://openalex.org/W2909637325","doi":"https://doi.org/10.1109/jbhi.2019.2891779","title":"Computational Prediction of Human Disease- Associated circRNAs Based on Manifold Regularization Learning Framework","display_name":"Computational Prediction of Human Disease- Associated circRNAs Based on Manifold Regularization Learning Framework","publication_year":2019,"publication_date":"2019-01-09","ids":{"openalex":"https://openalex.org/W2909637325","doi":"https://doi.org/10.1109/jbhi.2019.2891779","mag":"2909637325","pmid":"https://pubmed.ncbi.nlm.nih.gov/30629521"},"language":"en","primary_location":{"id":"doi:10.1109/jbhi.2019.2891779","is_oa":false,"landing_page_url":"https://doi.org/10.1109/jbhi.2019.2891779","pdf_url":null,"source":{"id":"https://openalex.org/S2495854775","display_name":"IEEE Journal of Biomedical and Health Informatics","issn_l":"2168-2194","issn":["2168-2194","2168-2208"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Journal of Biomedical and Health Informatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5086050506","display_name":"Qiu Xiao","orcid":"https://orcid.org/0000-0002-4726-7154"},"institutions":[{"id":"https://openalex.org/I173759888","display_name":"Hunan Normal University","ror":"https://ror.org/053w1zy07","country_code":"CN","type":"education","lineage":["https://openalex.org/I173759888"]},{"id":"https://openalex.org/I3130607311","display_name":"Changsha Normal University","ror":"https://ror.org/02sqk3z62","country_code":"CN","type":"education","lineage":["https://openalex.org/I3130607311"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Qiu Xiao","raw_affiliation_strings":["College of Information Science and Engineering, Hunan Normal University, Changsha, China"],"affiliations":[{"raw_affiliation_string":"College of Information Science and Engineering, Hunan Normal University, Changsha, China","institution_ids":["https://openalex.org/I3130607311","https://openalex.org/I173759888"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026469278","display_name":"Jiawei Luo","orcid":"https://orcid.org/0000-0003-2385-8272"},"institutions":[{"id":"https://openalex.org/I16609230","display_name":"Hunan University","ror":"https://ror.org/05htk5m33","country_code":"CN","type":"education","lineage":["https://openalex.org/I16609230"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jiawei Luo","raw_affiliation_strings":["College of Computer Science and Electronic Engineering, Hunan University, Changsha, China"],"affiliations":[{"raw_affiliation_string":"College of Computer Science and Electronic Engineering, Hunan University, Changsha, China","institution_ids":["https://openalex.org/I16609230"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5070031719","display_name":"Jianhua Dai","orcid":"https://orcid.org/0000-0003-1459-0833"},"institutions":[{"id":"https://openalex.org/I3130607311","display_name":"Changsha Normal University","ror":"https://ror.org/02sqk3z62","country_code":"CN","type":"education","lineage":["https://openalex.org/I3130607311"]},{"id":"https://openalex.org/I173759888","display_name":"Hunan Normal University","ror":"https://ror.org/053w1zy07","country_code":"CN","type":"education","lineage":["https://openalex.org/I173759888"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jianhua Dai","raw_affiliation_strings":["College of Information Science and Engineering, Hunan Normal University, Changsha, China"],"affiliations":[{"raw_affiliation_string":"College of Information Science and Engineering, Hunan Normal University, Changsha, China","institution_ids":["https://openalex.org/I3130607311","https://openalex.org/I173759888"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5086050506"],"corresponding_institution_ids":["https://openalex.org/I173759888","https://openalex.org/I3130607311"],"apc_list":null,"apc_paid":null,"fwci":5.0289,"has_fulltext":false,"cited_by_count":83,"citation_normalized_percentile":{"value":0.96326761,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":100},"biblio":{"volume":"23","issue":"6","first_page":"2661","last_page":"2669"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11765","display_name":"Circular RNAs in diseases","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11765","display_name":"Circular RNAs in diseases","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10062","display_name":"MicroRNA in disease regulation","score":0.995199978351593,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9925000071525574,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5953330993652344},{"id":"https://openalex.org/keywords/disease","display_name":"Disease","score":0.5569509863853455},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5080223083496094},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.43334531784057617},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4158076047897339},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.33817872405052185},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.28963202238082886},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.1655934751033783}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5953330993652344},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.5569509863853455},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5080223083496094},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.43334531784057617},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4158076047897339},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.33817872405052185},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.28963202238082886},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.1655934751033783},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000079962","descriptor_name":"RNA, Circular","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D000079962","descriptor_name":"RNA, Circular","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D000079962","descriptor_name":"RNA, Circular","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003324","descriptor_name":"Coronary Artery Disease","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D003324","descriptor_name":"Coronary Artery Disease","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D003324","descriptor_name":"Coronary Artery Disease","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D003324","descriptor_name":"Coronary Artery Disease","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D003324","descriptor_name":"Coronary Artery Disease","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D003324","descriptor_name":"Coronary Artery Disease","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019540","descriptor_name":"Area Under Curve","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019540","descriptor_name":"Area Under Curve","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019540","descriptor_name":"Area Under Curve","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1109/jbhi.2019.2891779","is_oa":false,"landing_page_url":"https://doi.org/10.1109/jbhi.2019.2891779","pdf_url":null,"source":{"id":"https://openalex.org/S2495854775","display_name":"IEEE Journal of Biomedical and Health Informatics","issn_l":"2168-2194","issn":["2168-2194","2168-2208"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Journal of Biomedical and Health Informatics","raw_type":"journal-article"},{"id":"pmid:30629521","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/30629521","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE journal of biomedical and health informatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1342612824","display_name":null,"funder_award_id":"61873089","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G2560277630","display_name":null,"funder_award_id":"2018TP1018","funder_id":"https://openalex.org/F4320321471","funder_display_name":"Hunan Provincial Science and Technology Department"},{"id":"https://openalex.org/G2889707724","display_name":null,"funder_award_id":"61572180","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G444304141","display_name":null,"funder_award_id":"2018RS3065","funder_id":"https://openalex.org/F4320321471","funder_display_name":"Hunan Provincial Science and Technology Department"},{"id":"https://openalex.org/G6806792462","display_name":null,"funder_award_id":"61473259","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320321471","display_name":"Hunan Provincial Science and Technology Department","ror":"https://ror.org/04qgr7x96"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":59,"referenced_works":["https://openalex.org/W1984014392","https://openalex.org/W1990517601","https://openalex.org/W2017919052","https://openalex.org/W2028302281","https://openalex.org/W2054141820","https://openalex.org/W2058835062","https://openalex.org/W2060940710","https://openalex.org/W2064165694","https://openalex.org/W2082565035","https://openalex.org/W2095799789","https://openalex.org/W2106029302","https://openalex.org/W2108119513","https://openalex.org/W2115662330","https://openalex.org/W2123688186","https://openalex.org/W2137084389","https://openalex.org/W2144719328","https://openalex.org/W2152719653","https://openalex.org/W2175378767","https://openalex.org/W2276711938","https://openalex.org/W2332619026","https://openalex.org/W2344280239","https://openalex.org/W2418417957","https://openalex.org/W2432718434","https://openalex.org/W2463737032","https://openalex.org/W2473455681","https://openalex.org/W2494395359","https://openalex.org/W2507445921","https://openalex.org/W2556839614","https://openalex.org/W2572935411","https://openalex.org/W2573032256","https://openalex.org/W2574217686","https://openalex.org/W2575644545","https://openalex.org/W2579878967","https://openalex.org/W2589000475","https://openalex.org/W2590492570","https://openalex.org/W2602188454","https://openalex.org/W2605646900","https://openalex.org/W2750900465","https://openalex.org/W2767264343","https://openalex.org/W2781567469","https://openalex.org/W2790953059","https://openalex.org/W2795210358","https://openalex.org/W2795546864","https://openalex.org/W2800766678","https://openalex.org/W2804622884","https://openalex.org/W2807016011","https://openalex.org/W2807407703","https://openalex.org/W2807602500","https://openalex.org/W2948726969","https://openalex.org/W2976877817","https://openalex.org/W2981016056","https://openalex.org/W6694688900","https://openalex.org/W6717142295","https://openalex.org/W6718313529","https://openalex.org/W6720838205","https://openalex.org/W6724876019","https://openalex.org/W6752483711","https://openalex.org/W6763189928","https://openalex.org/W6769766833"],"related_works":["https://openalex.org/W2961085424","https://openalex.org/W4306674287","https://openalex.org/W4387369504","https://openalex.org/W3046775127","https://openalex.org/W4394896187","https://openalex.org/W3170094116","https://openalex.org/W4386462264","https://openalex.org/W3107602296","https://openalex.org/W4364306694","https://openalex.org/W4312192474"],"abstract_inverted_index":{"The":[0,26],"accumulating":[1],"evidences":[2],"regarding":[3],"circular":[4],"RNAs":[5],"(circRNAs)":[6],"indicate":[7,225],"that":[8,118,226],"they":[9],"play":[10],"crucial":[11],"roles":[12],"in":[13,22,35,108,248],"a":[14,59,157,186,195,199,210],"wide":[15],"range":[16],"of":[17,28,41,44,67,73,97,245],"biological":[18],"processes":[19],"and":[20,24,48,104,111,129,132,169,182,184,203],"participate":[21],"tumorigenesis":[23],"progression.":[25],"number":[27],"newly":[29],"discovered":[30],"circRNAs":[31,45,57,84,119,181],"have":[32,149],"increased":[33],"dramatically":[34],"recent":[36],"years,":[37],"but":[38],"the":[39,65,70,95,101,116,163,174,243],"functions":[40,122],"vast":[42],"majority":[43],"remain":[46],"unknown,":[47],"little":[49,147],"effort":[50],"has":[51,76],"been":[52,150],"devoted":[53],"to":[54,93,140],"discover":[55],"disease-associated":[56,142,221],"on":[58,156],"large":[60,158],"scale":[61],"until":[62],"now.":[63],"With":[64],"advancement":[66],"high-throughput":[68],"technology,":[69],"increasing":[71],"availability":[72],"omics":[74],"data":[75],"provided":[77],"an":[78,134],"unprecedented":[79],"opportunity":[80],"for":[81,85,152,180,219],"prioritizing":[82],"candidate":[83],"diseases":[86,99,128,168],"by":[87,193],"computational":[88,136],"models,":[89],"which":[90],"will":[91],"contribute":[92],"exploring":[94],"pathogenesis":[96],"complex":[98],"at":[100],"circRNA":[102,196,232],"level":[103],"provide":[105],"promising":[106],"applications":[107],"disease":[109,200,231],"diagnosis":[110],"treatment.":[112],"Here":[113],"we":[114,171,208],"propose":[115],"assumption":[117],"with":[120,126,216,234],"similar":[121,127,197,201],"are":[123],"normally":[124],"associated":[125],"vice":[130],"versa,":[131],"develop":[133,209],"integrated":[135],"framework":[137],"called":[138],"MRLDC":[139,227],"identify":[141,230],"circRNAs.":[143,222],"To":[144],"our":[145,246],"knowledge,":[146],"efforts":[148],"developed":[151],"uncovering":[153],"circRNA-disease":[154,188,205,251],"associations":[155,166],"scale.":[159],"By":[160],"fully":[161],"exploiting":[162],"experimentally":[164],"validated":[165],"between":[167],"circRNAs,":[170],"first":[172],"compute":[173],"Gaussian":[175],"interaction":[176],"profile":[177],"kernel":[178],"similarity":[179],"diseases,":[183],"then":[185],"heterogeneous":[187],"bilayer":[189],"network":[190],"is":[191],"constructed":[192],"combining":[194],"network,":[198,202],"known":[204],"associations.":[206,252],"Subsequently,":[207],"weighted":[211],"low-rank":[212],"approximation":[213],"optimization":[214],"algorithm":[215],"dual-manifold":[217],"regularizations":[218],"predicting":[220],"Experimental":[223],"results":[224],"can":[228],"effectively":[229],"candidates":[233],"high":[235],"accuracy.":[236],"In":[237],"addition,":[238],"case":[239],"studies":[240],"further":[241],"demonstrate":[242],"ability":[244],"method":[247],"discovering":[249],"potential":[250]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":10},{"year":2023,"cited_by_count":9},{"year":2022,"cited_by_count":14},{"year":2021,"cited_by_count":20},{"year":2020,"cited_by_count":15},{"year":2019,"cited_by_count":10},{"year":2017,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
