{"id":"https://openalex.org/W2904521286","doi":"https://doi.org/10.1109/jbhi.2018.2885214","title":"Cloud Deployment of High-Resolution Medical Image Analysis With TOMAAT","display_name":"Cloud Deployment of High-Resolution Medical Image Analysis With TOMAAT","publication_year":2018,"publication_date":"2018-12-05","ids":{"openalex":"https://openalex.org/W2904521286","doi":"https://doi.org/10.1109/jbhi.2018.2885214","mag":"2904521286","pmid":"https://pubmed.ncbi.nlm.nih.gov/30530377"},"language":"en","primary_location":{"id":"doi:10.1109/jbhi.2018.2885214","is_oa":false,"landing_page_url":"https://doi.org/10.1109/jbhi.2018.2885214","pdf_url":null,"source":{"id":"https://openalex.org/S2495854775","display_name":"IEEE Journal of Biomedical and Health Informatics","issn_l":"2168-2194","issn":["2168-2194","2168-2208"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Journal of Biomedical and Health Informatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5054234902","display_name":"Fausto Milletar\u00ec","orcid":"https://orcid.org/0000-0002-8319-4773"},"institutions":[{"id":"https://openalex.org/I4210127875","display_name":"Nvidia (United States)","ror":"https://ror.org/03jdj4y14","country_code":"US","type":"company","lineage":["https://openalex.org/I4210127875"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Fausto Milletari","raw_affiliation_strings":["Nvidia Inc., Santa Clara, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Nvidia Inc., Santa Clara, USA","institution_ids":["https://openalex.org/I4210127875"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033575564","display_name":"Johann Frei","orcid":"https://orcid.org/0000-0003-0323-0904"},"institutions":[{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Johann Frei","raw_affiliation_strings":["Technical University of Munich Garching, Garching bei M\u00fcnchen, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Technical University of Munich Garching, Garching bei M\u00fcnchen, Germany","institution_ids":["https://openalex.org/I62916508"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003897115","display_name":"Moustafa Aboulatta","orcid":"https://orcid.org/0000-0003-4718-0750"},"institutions":[{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Moustafa Aboulatta","raw_affiliation_strings":["Technical University of Munich Garching, Garching bei M\u00fcnchen, Germany"],"raw_orcid":"https://orcid.org/0000-0003-4718-0750","affiliations":[{"raw_affiliation_string":"Technical University of Munich Garching, Garching bei M\u00fcnchen, Germany","institution_ids":["https://openalex.org/I62916508"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051295664","display_name":"Gerome Vivar","orcid":"https://orcid.org/0000-0001-5370-3090"},"institutions":[{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Gerome Vivar","raw_affiliation_strings":["Technical University of Munich Garching, Garching bei M\u00fcnchen, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Technical University of Munich Garching, Garching bei M\u00fcnchen, Germany","institution_ids":["https://openalex.org/I62916508"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5031842791","display_name":"Seyed\u2010Ahmad Ahmadi","orcid":"https://orcid.org/0000-0002-7082-0739"},"institutions":[{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Seyed-Ahmad Ahmadi","raw_affiliation_strings":["Technical University of Munich Garching, Garching bei M\u00fcnchen, Germany"],"raw_orcid":"https://orcid.org/0000-0002-7082-0739","affiliations":[{"raw_affiliation_string":"Technical University of Munich Garching, Garching bei M\u00fcnchen, Germany","institution_ids":["https://openalex.org/I62916508"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.7576,"has_fulltext":false,"cited_by_count":19,"citation_normalized_percentile":{"value":0.70353297,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":98},"biblio":{"volume":"23","issue":"3","first_page":"969","last_page":"977"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T14510","display_name":"Medical Imaging and Analysis","score":0.4357999861240387,"subfield":{"id":"https://openalex.org/subfields/2204","display_name":"Biomedical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T14510","display_name":"Medical Imaging and Analysis","score":0.4357999861240387,"subfield":{"id":"https://openalex.org/subfields/2204","display_name":"Biomedical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10052","display_name":"Medical Image Segmentation Techniques","score":0.12620000541210175,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.1216999962925911,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8073588609695435},{"id":"https://openalex.org/keywords/cloud-computing","display_name":"Cloud computing","score":0.7459700107574463},{"id":"https://openalex.org/keywords/software-deployment","display_name":"Software deployment","score":0.6130874752998352},{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.5942443013191223},{"id":"https://openalex.org/keywords/dicom","display_name":"DICOM","score":0.5217046141624451},{"id":"https://openalex.org/keywords/image-sharing","display_name":"Image sharing","score":0.5203568339347839},{"id":"https://openalex.org/keywords/the-internet","display_name":"The Internet","score":0.48717325925827026},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.48083198070526123},{"id":"https://openalex.org/keywords/client","display_name":"Client","score":0.4794284701347351},{"id":"https://openalex.org/keywords/image-segmentation","display_name":"Image segmentation","score":0.412310391664505},{"id":"https://openalex.org/keywords/suite","display_name":"Suite","score":0.41122424602508545},{"id":"https://openalex.org/keywords/segmentation","display_name":"Segmentation","score":0.4107578992843628},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.38454484939575195},{"id":"https://openalex.org/keywords/server","display_name":"Server","score":0.35324060916900635},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.31898069381713867},{"id":"https://openalex.org/keywords/image","display_name":"Image (mathematics)","score":0.2969803214073181},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.21428650617599487},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.14943957328796387},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.13478490710258484}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8073588609695435},{"id":"https://openalex.org/C79974875","wikidata":"https://www.wikidata.org/wiki/Q483639","display_name":"Cloud computing","level":2,"score":0.7459700107574463},{"id":"https://openalex.org/C105339364","wikidata":"https://www.wikidata.org/wiki/Q2297740","display_name":"Software deployment","level":2,"score":0.6130874752998352},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.5942443013191223},{"id":"https://openalex.org/C77331912","wikidata":"https://www.wikidata.org/wiki/Q81095","display_name":"DICOM","level":2,"score":0.5217046141624451},{"id":"https://openalex.org/C2780639701","wikidata":"https://www.wikidata.org/wiki/Q354869","display_name":"Image sharing","level":3,"score":0.5203568339347839},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.48717325925827026},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.48083198070526123},{"id":"https://openalex.org/C27713364","wikidata":"https://www.wikidata.org/wiki/Q528166","display_name":"Client","level":3,"score":0.4794284701347351},{"id":"https://openalex.org/C124504099","wikidata":"https://www.wikidata.org/wiki/Q56933","display_name":"Image segmentation","level":3,"score":0.412310391664505},{"id":"https://openalex.org/C79581498","wikidata":"https://www.wikidata.org/wiki/Q1367530","display_name":"Suite","level":2,"score":0.41122424602508545},{"id":"https://openalex.org/C89600930","wikidata":"https://www.wikidata.org/wiki/Q1423946","display_name":"Segmentation","level":2,"score":0.4107578992843628},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.38454484939575195},{"id":"https://openalex.org/C93996380","wikidata":"https://www.wikidata.org/wiki/Q44127","display_name":"Server","level":2,"score":0.35324060916900635},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.31898069381713867},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.2969803214073181},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.21428650617599487},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.14943957328796387},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.13478490710258484},{"id":"https://openalex.org/C166957645","wikidata":"https://www.wikidata.org/wiki/Q23498","display_name":"Archaeology","level":1,"score":0.0},{"id":"https://openalex.org/C95457728","wikidata":"https://www.wikidata.org/wiki/Q309","display_name":"History","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000067917","descriptor_name":"Cloud Computing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000067917","descriptor_name":"Cloud Computing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000067917","descriptor_name":"Cloud Computing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003952","descriptor_name":"Diagnostic Imaging","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003952","descriptor_name":"Diagnostic Imaging","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003952","descriptor_name":"Diagnostic Imaging","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007090","descriptor_name":"Image Interpretation, Computer-Assisted","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007090","descriptor_name":"Image Interpretation, Computer-Assisted","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007090","descriptor_name":"Image Interpretation, Computer-Assisted","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1109/jbhi.2018.2885214","is_oa":false,"landing_page_url":"https://doi.org/10.1109/jbhi.2018.2885214","pdf_url":null,"source":{"id":"https://openalex.org/S2495854775","display_name":"IEEE Journal of Biomedical and Health Informatics","issn_l":"2168-2194","issn":["2168-2194","2168-2208"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Journal of Biomedical and Health Informatics","raw_type":"journal-article"},{"id":"pmid:30530377","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/30530377","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE journal of biomedical and health informatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Partnerships for the goals","score":0.46000000834465027,"id":"https://metadata.un.org/sdg/17"}],"awards":[{"id":"https://openalex.org/G2897307073","display_name":null,"funder_award_id":"01 EO 0901","funder_id":"https://openalex.org/F4320330540","funder_display_name":"Deutschen Schwindel- und Gleichgewichtszentrum"}],"funders":[{"id":"https://openalex.org/F4320330540","display_name":"Deutschen Schwindel- und Gleichgewichtszentrum","ror":null}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":30,"referenced_works":["https://openalex.org/W602397586","https://openalex.org/W1641498739","https://openalex.org/W1907845728","https://openalex.org/W1967251218","https://openalex.org/W1970928383","https://openalex.org/W2009813001","https://openalex.org/W2025009638","https://openalex.org/W2026616100","https://openalex.org/W2028911404","https://openalex.org/W2084177652","https://openalex.org/W2102099319","https://openalex.org/W2106033751","https://openalex.org/W2327084999","https://openalex.org/W2464708700","https://openalex.org/W2473108490","https://openalex.org/W2522017091","https://openalex.org/W2594499462","https://openalex.org/W2620296437","https://openalex.org/W2732931556","https://openalex.org/W2744773000","https://openalex.org/W2751909359","https://openalex.org/W2755930428","https://openalex.org/W2769279756","https://openalex.org/W2799913653","https://openalex.org/W2800203920","https://openalex.org/W2962914239","https://openalex.org/W6720301174","https://openalex.org/W6734975580","https://openalex.org/W6743645564","https://openalex.org/W6746229581"],"related_works":["https://openalex.org/W2352944256","https://openalex.org/W2528730528","https://openalex.org/W2358954258","https://openalex.org/W2376146719","https://openalex.org/W1524078913","https://openalex.org/W205360658","https://openalex.org/W1990825535","https://openalex.org/W1991490214","https://openalex.org/W1030206070","https://openalex.org/W2099084456"],"abstract_inverted_index":{"BACKGROUND:":[0],"Deep":[1],"learning":[2,244],"has":[3],"been":[4],"recently":[5],"applied":[6],"to":[7,81,196],"a":[8,93,111,221,253],"multitude":[9],"of":[10,26,30,102,114,162,191,233],"computer":[11],"vision":[12],"and":[13,51,61,126,145,153,160,178,188,219,246,262,268],"medical":[14,84,98,122,167,225,247],"image":[15,85,99,123,149,168,226,235],"analysis":[16,86,124,169,227],"problems.":[17],"Although":[18],"recent":[19],"research":[20,71],"efforts":[21],"have":[22],"improved":[23],"the":[24,27,31,55,88,158,183,213,238,250,260],"state":[25],"art,":[28],"most":[29],"methods":[32],"cannot":[33],"be":[34],"easily":[35],"accessed,":[36],"compared":[37],"or":[38,43],"used":[39],"by":[40,259],"other":[41],"researchers":[42,245],"clinicians.":[44],"Even":[45],"if":[46],"developers":[47],"publish":[48],"their":[49],"code":[50],"pre-trained":[52],"models":[53],"on":[54,164,216],"internet,":[56],"integration":[57],"in":[58,209,212,220,237,249],"stand-alone":[59],"applications":[60],"existing":[62],"workflows":[63],"is":[64,136,257],"often":[65],"not":[66],"straightforward,":[67],"especially":[68],"for":[69,96,133,147],"clinical":[70],"partners.":[72],"In":[73],"this":[74],"paper,":[75],"we":[76],"propose":[77],"an":[78,107,143],"open-source":[79],"framework":[80],"provide":[82],"AI-enabled":[83],"through":[87,138],"network.":[89],"METHODS:":[90],"TOMAAT":[91,163,230],"provides":[92],"cloud":[94],"environment":[95],"general":[97],"analysis,":[100],"composed":[101],"three":[103],"basic":[104],"components:":[105],"(i)":[106],"announcement":[108,255],"service,":[109],"maintaining":[110],"public":[112,254],"registry":[113],"(ii)":[115],"multiple":[116],"distributed":[117],"server":[118],"nodes":[119],"offering":[120,130],"various":[121],"solutions,":[125],"(iii)":[127],"client":[128,203],"software":[129],"simple":[131,202],"interfaces":[132],"users.":[134],"Deployment":[135],"realized":[137],"HTTP-based":[139],"communication,":[140],"along":[141],"with":[142,201],"API":[144],"wrappers":[146],"common":[148],"manipulations":[150],"during":[151],"pre-":[152],"post-processing.":[154],"RESULTS:":[155],"We":[156,205],"demonstrate":[157],"utility":[159],"versatility":[161],"several":[165,263],"hallmark":[166],"tasks:":[170],"segmentation,":[171],"diffeomorphic":[172],"deformable":[173],"atlas":[174],"registration,":[175],"landmark":[176],"localization,":[177],"workflow":[179],"integration.":[180],"Through":[181],"TOMAAT,":[182],"high":[184],"hardware":[185],"demands,":[186],"setup":[187],"model":[189],"complexity":[190],"demonstrated":[192],"approaches":[193],"are":[194,199,266],"transparent":[195],"users,":[197],"who":[198],"provided":[200],"interfaces.":[204],"present":[206],"example":[207],"clients":[208],"three-dimensional":[210],"Slicer,":[211],"web":[214],"browser,":[215],"iOS":[217],"devices":[218],"commercially":[222],"available,":[223],"certified":[224],"suite.":[228],"CONCLUSION:":[229],"enables":[231],"deployment":[232],"state-of-the-art":[234],"segmentation":[236],"cloud,":[239],"fostering":[240],"interaction":[241],"among":[242],"deep":[243],"collaborators":[248],"clinic.":[251],"Currently,":[252],"service":[256],"hosted":[258],"authors,":[261],"ready-to-use":[264],"services":[265],"registered":[267],"enlisted":[269],"at":[270],"http://tomaat.cloud.":[271]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":2},{"year":2023,"cited_by_count":4},{"year":2022,"cited_by_count":5},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":2}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
