{"id":"https://openalex.org/W2900223378","doi":"https://doi.org/10.1109/jbhi.2018.2879744","title":"Exploring Joint AB-LSTM With Embedded Lemmas for Adverse Drug Reaction Discovery","display_name":"Exploring Joint AB-LSTM With Embedded Lemmas for Adverse Drug Reaction Discovery","publication_year":2018,"publication_date":"2018-11-05","ids":{"openalex":"https://openalex.org/W2900223378","doi":"https://doi.org/10.1109/jbhi.2018.2879744","mag":"2900223378","pmid":"https://pubmed.ncbi.nlm.nih.gov/30403644"},"language":"en","primary_location":{"id":"doi:10.1109/jbhi.2018.2879744","is_oa":false,"landing_page_url":"https://doi.org/10.1109/jbhi.2018.2879744","pdf_url":null,"source":{"id":"https://openalex.org/S2495854775","display_name":"IEEE Journal of Biomedical and Health Informatics","issn_l":"2168-2194","issn":["2168-2194","2168-2208"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Journal of Biomedical and Health Informatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5071070135","display_name":"Sara Santiso","orcid":"https://orcid.org/0000-0002-2314-3018"},"institutions":[{"id":"https://openalex.org/I169108374","display_name":"University of the Basque Country","ror":"https://ror.org/000xsnr85","country_code":"ES","type":"education","lineage":["https://openalex.org/I169108374"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"Sara Santiso","raw_affiliation_strings":["IXA Group, University of the Basque Country (UPV-EHU), Donostia, Spain"],"affiliations":[{"raw_affiliation_string":"IXA Group, University of the Basque Country (UPV-EHU), Donostia, Spain","institution_ids":["https://openalex.org/I169108374"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076598260","display_name":"Alicia P\u00e9rez","orcid":"https://orcid.org/0000-0003-2638-9598"},"institutions":[{"id":"https://openalex.org/I169108374","display_name":"University of the Basque Country","ror":"https://ror.org/000xsnr85","country_code":"ES","type":"education","lineage":["https://openalex.org/I169108374"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Alicia Perez","raw_affiliation_strings":["IXA Group, University of the Basque Country (UPV-EHU), Donostia, Spain"],"affiliations":[{"raw_affiliation_string":"IXA Group, University of the Basque Country (UPV-EHU), Donostia, Spain","institution_ids":["https://openalex.org/I169108374"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5064615378","display_name":"Arantza Casillas","orcid":"https://orcid.org/0000-0003-4248-8182"},"institutions":[{"id":"https://openalex.org/I169108374","display_name":"University of the Basque Country","ror":"https://ror.org/000xsnr85","country_code":"ES","type":"education","lineage":["https://openalex.org/I169108374"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Arantza Casillas","raw_affiliation_strings":["IXA Group, University of the Basque Country (UPV-EHU), Donostia, Spain"],"affiliations":[{"raw_affiliation_string":"IXA Group, University of the Basque Country (UPV-EHU), Donostia, Spain","institution_ids":["https://openalex.org/I169108374"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5071070135"],"corresponding_institution_ids":["https://openalex.org/I169108374"],"apc_list":null,"apc_paid":null,"fwci":2.298,"has_fulltext":false,"cited_by_count":38,"citation_normalized_percentile":{"value":0.89401345,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":99},"biblio":{"volume":"23","issue":"5","first_page":"2148","last_page":"2155"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9937999844551086,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9937999844551086,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9894000291824341,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11943","display_name":"Pharmacovigilance and Adverse Drug Reactions","score":0.9848999977111816,"subfield":{"id":"https://openalex.org/subfields/3005","display_name":"Toxicology"},"field":{"id":"https://openalex.org/fields/30","display_name":"Pharmacology, Toxicology and Pharmaceutics"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.73777174949646},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.6234256625175476},{"id":"https://openalex.org/keywords/workload","display_name":"Workload","score":0.6118708252906799},{"id":"https://openalex.org/keywords/class","display_name":"Class (philosophy)","score":0.5915815234184265},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.5413271188735962},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5296651721000671},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.5278342366218567},{"id":"https://openalex.org/keywords/joint","display_name":"Joint (building)","score":0.4887528419494629},{"id":"https://openalex.org/keywords/construct","display_name":"Construct (python library)","score":0.473242849111557},{"id":"https://openalex.org/keywords/event","display_name":"Event (particle physics)","score":0.4378066062927246},{"id":"https://openalex.org/keywords/health-records","display_name":"Health records","score":0.4370056390762329},{"id":"https://openalex.org/keywords/artificial-neural-network","display_name":"Artificial neural network","score":0.42919105291366577},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.41148242354393005},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3412008285522461}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.73777174949646},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.6234256625175476},{"id":"https://openalex.org/C2778476105","wikidata":"https://www.wikidata.org/wiki/Q628539","display_name":"Workload","level":2,"score":0.6118708252906799},{"id":"https://openalex.org/C2777212361","wikidata":"https://www.wikidata.org/wiki/Q5127848","display_name":"Class (philosophy)","level":2,"score":0.5915815234184265},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.5413271188735962},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5296651721000671},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.5278342366218567},{"id":"https://openalex.org/C18555067","wikidata":"https://www.wikidata.org/wiki/Q8375051","display_name":"Joint (building)","level":2,"score":0.4887528419494629},{"id":"https://openalex.org/C2780801425","wikidata":"https://www.wikidata.org/wiki/Q5164392","display_name":"Construct (python library)","level":2,"score":0.473242849111557},{"id":"https://openalex.org/C2779662365","wikidata":"https://www.wikidata.org/wiki/Q5416694","display_name":"Event (particle physics)","level":2,"score":0.4378066062927246},{"id":"https://openalex.org/C3019952477","wikidata":"https://www.wikidata.org/wiki/Q1324077","display_name":"Health records","level":3,"score":0.4370056390762329},{"id":"https://openalex.org/C50644808","wikidata":"https://www.wikidata.org/wiki/Q192776","display_name":"Artificial neural network","level":2,"score":0.42919105291366577},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.41148242354393005},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3412008285522461},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C160735492","wikidata":"https://www.wikidata.org/wiki/Q31207","display_name":"Health care","level":2,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C170154142","wikidata":"https://www.wikidata.org/wiki/Q150737","display_name":"Architectural engineering","level":1,"score":0.0},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C50522688","wikidata":"https://www.wikidata.org/wiki/Q189833","display_name":"Economic growth","level":1,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008490","descriptor_name":"Medical Informatics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D008490","descriptor_name":"Medical Informatics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D008490","descriptor_name":"Medical Informatics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064420","descriptor_name":"Drug-Related Side Effects and Adverse Reactions","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D064420","descriptor_name":"Drug-Related Side Effects and Adverse Reactions","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D064420","descriptor_name":"Drug-Related Side Effects and Adverse Reactions","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1109/jbhi.2018.2879744","is_oa":false,"landing_page_url":"https://doi.org/10.1109/jbhi.2018.2879744","pdf_url":null,"source":{"id":"https://openalex.org/S2495854775","display_name":"IEEE Journal of Biomedical and Health Informatics","issn_l":"2168-2194","issn":["2168-2194","2168-2208"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Journal of Biomedical and Health Informatics","raw_type":"journal-article"},{"id":"pmid:30403644","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/30403644","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE journal of biomedical and health informatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3","score":0.699999988079071}],"awards":[{"id":"https://openalex.org/G8372737763","display_name":null,"funder_award_id":"TIN2016-77820-C3-1-R","funder_id":"https://openalex.org/F4320309480","funder_display_name":"Nvidia"}],"funders":[{"id":"https://openalex.org/F4320309480","display_name":"Nvidia","ror":"https://ror.org/03jdj4y14"},{"id":"https://openalex.org/F4320321919","display_name":"Euskal Herriko Unibertsitatea","ror":"https://ror.org/000xsnr85"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":73,"referenced_works":["https://openalex.org/W1672743","https://openalex.org/W92469554","https://openalex.org/W1152166452","https://openalex.org/W1522301498","https://openalex.org/W1614298861","https://openalex.org/W1815076433","https://openalex.org/W1836465849","https://openalex.org/W1904365287","https://openalex.org/W1922167300","https://openalex.org/W2009890917","https://openalex.org/W2016944307","https://openalex.org/W2064675550","https://openalex.org/W2071478164","https://openalex.org/W2101013878","https://openalex.org/W2118280677","https://openalex.org/W2119191234","https://openalex.org/W2131774270","https://openalex.org/W2153579005","https://openalex.org/W2155454737","https://openalex.org/W2158698691","https://openalex.org/W2170505850","https://openalex.org/W2172767501","https://openalex.org/W2209812445","https://openalex.org/W2245472176","https://openalex.org/W2250539671","https://openalex.org/W2250575108","https://openalex.org/W2251622960","https://openalex.org/W2251905489","https://openalex.org/W2296645902","https://openalex.org/W2440599146","https://openalex.org/W2469314752","https://openalex.org/W2479597298","https://openalex.org/W2485374661","https://openalex.org/W2488984245","https://openalex.org/W2508618307","https://openalex.org/W2513388359","https://openalex.org/W2514798530","https://openalex.org/W2517194566","https://openalex.org/W2551429935","https://openalex.org/W2562564313","https://openalex.org/W2564980658","https://openalex.org/W2574184737","https://openalex.org/W2600659824","https://openalex.org/W2606089314","https://openalex.org/W2619099103","https://openalex.org/W2726375170","https://openalex.org/W2740783897","https://openalex.org/W2759840904","https://openalex.org/W2775603476","https://openalex.org/W2792406544","https://openalex.org/W2804664626","https://openalex.org/W2911964244","https://openalex.org/W2962934648","https://openalex.org/W2963042536","https://openalex.org/W2964026782","https://openalex.org/W2964121744","https://openalex.org/W2964349647","https://openalex.org/W4210984920","https://openalex.org/W4211159217","https://openalex.org/W4212881197","https://openalex.org/W4254816979","https://openalex.org/W4294170691","https://openalex.org/W4295888145","https://openalex.org/W6631190155","https://openalex.org/W6636510571","https://openalex.org/W6638545294","https://openalex.org/W6638667902","https://openalex.org/W6640036494","https://openalex.org/W6674934153","https://openalex.org/W6682691769","https://openalex.org/W6690045299","https://openalex.org/W6732334392","https://openalex.org/W7047688323"],"related_works":["https://openalex.org/W2366107444","https://openalex.org/W2000785801","https://openalex.org/W986318368","https://openalex.org/W2384410913","https://openalex.org/W2352878646","https://openalex.org/W4388145910","https://openalex.org/W2004734601","https://openalex.org/W2287264064","https://openalex.org/W2130149817","https://openalex.org/W2990194547"],"abstract_inverted_index":{"This":[0],"work":[1],"focuses":[2],"on":[3,51,164],"the":[4,24,58,74,77,96,131,147,174],"detection":[5],"of":[6,26,60,76,130,149,184],"adverse":[7],"drug":[8],"reactions":[9],"(ADRs)":[10],"in":[11,17,41,138],"electronic":[12],"health":[13],"records":[14],"(EHRs)":[15],"written":[16],"Spanish.":[18],"The":[19,32],"World":[20],"Health":[21],"Organization":[22],"underlines":[23],"importance":[25],"reporting":[27],"ADRs":[28,36,91],"for":[29,123],"patients'":[30],"safety.":[31],"fact":[33],"is":[34],"that":[35,173],"tend":[37],"to":[38,56,82,141],"be":[39,80,99],"under-reported":[40],"daily":[42],"hospital":[43],"praxis.":[44],"In":[45],"this":[46,156],"context,":[47],"automatic":[48],"solutions":[49,64],"based":[50,163],"text":[52],"mining":[53],"can":[54],"help":[55],"alleviate":[57],"workload":[59],"experts.":[61],"Nevertheless,":[62],"these":[63,107],"pose":[65],"two":[66],"challenges:":[67],"1)":[68],"EHRs":[69],"show":[70],"high":[71],"lexical":[72,143],"variability,":[73,144],"characterization":[75],"events":[78],"must":[79],"able":[81],"deal":[83],"with":[84,158],"unseen":[85],"words":[86],"or":[87,167],"contexts":[88],"and":[89],"2)":[90],"are":[92],"rare":[93],"events,":[94],"hence,":[95],"system":[97],"should":[98],"robust":[100],"against":[101],"skewed":[102],"class":[103],"distribution.":[104],"To":[105],"tackle":[106],"challenges,":[108],"deep":[109],"neural":[110],"networks":[111],"seem":[112],"appropriate":[113],"because":[114],"they":[115],"allow":[116],"a":[117,124,128],"high-level":[118],"representation.":[119],"Specifically,":[120],"we":[121,145],"opted":[122],"joint":[125,175],"AB-LSTM":[126,176],"network,":[127],"sub-class":[129],"bidirectional":[132],"long":[133],"short-term":[134],"memory":[135],"network.":[136],"Besides,":[137],"an":[139,182],"attempt":[140],"reinforce":[142],"proposed":[146],"use":[148],"embeddings":[150],"created":[151],"using":[152],"lemmas.":[153],"We":[154],"compared":[155],"approach":[157,177],"supervised":[159],"event":[160],"extraction":[161],"approaches":[162],"either":[165],"symbolic":[166],"dense":[168],"representations.":[169],"Experimental":[170],"results":[171],"showed":[172],"outperformed":[178],"previous":[179],"approaches,":[180],"achieving":[181],"f-measure":[183],"73.3.":[185]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":5},{"year":2022,"cited_by_count":4},{"year":2021,"cited_by_count":11},{"year":2020,"cited_by_count":6},{"year":2019,"cited_by_count":8}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
