{"id":"https://openalex.org/W2890210261","doi":"https://doi.org/10.1109/jbhi.2018.2870728","title":"HerGePred: Heterogeneous Network Embedding Representation for Disease Gene Prediction","display_name":"HerGePred: Heterogeneous Network Embedding Representation for Disease Gene Prediction","publication_year":2018,"publication_date":"2018-09-17","ids":{"openalex":"https://openalex.org/W2890210261","doi":"https://doi.org/10.1109/jbhi.2018.2870728","mag":"2890210261","pmid":"https://pubmed.ncbi.nlm.nih.gov/31283472"},"language":"en","primary_location":{"id":"doi:10.1109/jbhi.2018.2870728","is_oa":true,"landing_page_url":"https://doi.org/10.1109/jbhi.2018.2870728","pdf_url":"https://ieeexplore.ieee.org/ielx7/6221020/8752487/08466588.pdf","source":{"id":"https://openalex.org/S2495854775","display_name":"IEEE Journal of Biomedical and Health Informatics","issn_l":"2168-2194","issn":["2168-2194","2168-2208"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Journal of Biomedical and Health Informatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://ieeexplore.ieee.org/ielx7/6221020/8752487/08466588.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5051184139","display_name":"Kuo Yang","orcid":"https://orcid.org/0000-0003-0736-4512"},"institutions":[{"id":"https://openalex.org/I21193070","display_name":"Beijing Jiaotong University","ror":"https://ror.org/01yj56c84","country_code":"CN","type":"education","lineage":["https://openalex.org/I21193070"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Kuo Yang","raw_affiliation_strings":["School of Computer and Information Technology and Beijing Key Laboratory of Traffic Data Analysis and Mining, Beijing Jiaotong University, Beijing, China"],"affiliations":[{"raw_affiliation_string":"School of Computer and Information Technology and Beijing Key Laboratory of Traffic Data Analysis and Mining, Beijing Jiaotong University, Beijing, China","institution_ids":["https://openalex.org/I21193070"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003191410","display_name":"Ruyu Wang","orcid":null},"institutions":[{"id":"https://openalex.org/I21193070","display_name":"Beijing Jiaotong University","ror":"https://ror.org/01yj56c84","country_code":"CN","type":"education","lineage":["https://openalex.org/I21193070"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ruyu Wang","raw_affiliation_strings":["School of Computer and Information Technology and Beijing Key Laboratory of Traffic Data Analysis and Mining, Beijing Jiaotong University, Beijing, China"],"affiliations":[{"raw_affiliation_string":"School of Computer and Information Technology and Beijing Key Laboratory of Traffic Data Analysis and Mining, Beijing Jiaotong University, Beijing, China","institution_ids":["https://openalex.org/I21193070"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101657809","display_name":"Guangming Liu","orcid":"https://orcid.org/0000-0002-5630-7445"},"institutions":[{"id":"https://openalex.org/I21193070","display_name":"Beijing Jiaotong University","ror":"https://ror.org/01yj56c84","country_code":"CN","type":"education","lineage":["https://openalex.org/I21193070"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Guangming Liu","raw_affiliation_strings":["School of Computer and Information Technology and Beijing Key Laboratory of Traffic Data Analysis and Mining, Beijing Jiaotong University, Beijing, China"],"affiliations":[{"raw_affiliation_string":"School of Computer and Information Technology and Beijing Key Laboratory of Traffic Data Analysis and Mining, Beijing Jiaotong University, Beijing, China","institution_ids":["https://openalex.org/I21193070"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004926341","display_name":"Zixin Shu","orcid":"https://orcid.org/0000-0001-6078-5645"},"institutions":[{"id":"https://openalex.org/I21193070","display_name":"Beijing Jiaotong University","ror":"https://ror.org/01yj56c84","country_code":"CN","type":"education","lineage":["https://openalex.org/I21193070"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zixin Shu","raw_affiliation_strings":["School of Computer and Information Technology and Beijing Key Laboratory of Traffic Data Analysis and Mining, Beijing Jiaotong University, Beijing, China"],"affiliations":[{"raw_affiliation_string":"School of Computer and Information Technology and Beijing Key Laboratory of Traffic Data Analysis and Mining, Beijing Jiaotong University, Beijing, China","institution_ids":["https://openalex.org/I21193070"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100387096","display_name":"Ning Wang","orcid":"https://orcid.org/0000-0001-8903-8790"},"institutions":[{"id":"https://openalex.org/I21193070","display_name":"Beijing Jiaotong University","ror":"https://ror.org/01yj56c84","country_code":"CN","type":"education","lineage":["https://openalex.org/I21193070"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ning Wang","raw_affiliation_strings":["School of Computer and Information Technology and Beijing Key Laboratory of Traffic Data Analysis and Mining, Beijing Jiaotong University, Beijing, China"],"affiliations":[{"raw_affiliation_string":"School of Computer and Information Technology and Beijing Key Laboratory of Traffic Data Analysis and Mining, Beijing Jiaotong University, Beijing, China","institution_ids":["https://openalex.org/I21193070"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012982867","display_name":"Runshun Zhang","orcid":"https://orcid.org/0000-0002-7127-8865"},"institutions":[{"id":"https://openalex.org/I200296433","display_name":"Chinese Academy of Medical Sciences & Peking Union Medical College","ror":"https://ror.org/02drdmm93","country_code":"CN","type":"education","lineage":["https://openalex.org/I200296433"]},{"id":"https://openalex.org/I4210146387","display_name":"Guang\u2019anmen Hospital","ror":"https://ror.org/04gjmb875","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210146387"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Runshun Zhang","raw_affiliation_strings":["Guanganmen Hospital, China Academy of Chinese Medical Sciences, Beijing, China"],"affiliations":[{"raw_affiliation_string":"Guanganmen Hospital, China Academy of Chinese Medical Sciences, Beijing, China","institution_ids":["https://openalex.org/I200296433","https://openalex.org/I4210146387"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027501725","display_name":"Jian Yu","orcid":"https://orcid.org/0000-0002-9488-5182"},"institutions":[{"id":"https://openalex.org/I21193070","display_name":"Beijing Jiaotong University","ror":"https://ror.org/01yj56c84","country_code":"CN","type":"education","lineage":["https://openalex.org/I21193070"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jian Yu","raw_affiliation_strings":["School of Computer and Information Technology and Beijing Key Laboratory of Traffic Data Analysis and Mining, Beijing Jiaotong University, Beijing, China"],"affiliations":[{"raw_affiliation_string":"School of Computer and Information Technology and Beijing Key Laboratory of Traffic Data Analysis and Mining, Beijing Jiaotong University, Beijing, China","institution_ids":["https://openalex.org/I21193070"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100379152","display_name":"Jianxin Chen","orcid":"https://orcid.org/0000-0003-4067-5638"},"institutions":[{"id":"https://openalex.org/I17747738","display_name":"Beijing University of Chinese Medicine","ror":"https://ror.org/05damtm70","country_code":"CN","type":"education","lineage":["https://openalex.org/I17747738"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jianxin Chen","raw_affiliation_strings":["Beijing University of Chinese Medicine, Beijing, China"],"affiliations":[{"raw_affiliation_string":"Beijing University of Chinese Medicine, Beijing, China","institution_ids":["https://openalex.org/I17747738"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5108275068","display_name":"Xiaodong Li","orcid":null},"institutions":[{"id":"https://openalex.org/I4210099122","display_name":"Hubei Provincial Hospital of Traditional Chinese Medicine","ror":"https://ror.org/00xabh388","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210099122"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiaodong Li","raw_affiliation_strings":["Hubei Provincial Hospital of Traditional Chinese Medicine, Wuhan, China"],"affiliations":[{"raw_affiliation_string":"Hubei Provincial Hospital of Traditional Chinese Medicine, Wuhan, China","institution_ids":["https://openalex.org/I4210099122"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5052838340","display_name":"Xuezhong Zhou","orcid":"https://orcid.org/0000-0002-4713-3594"},"institutions":[{"id":"https://openalex.org/I21193070","display_name":"Beijing Jiaotong University","ror":"https://ror.org/01yj56c84","country_code":"CN","type":"education","lineage":["https://openalex.org/I21193070"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xuezhong Zhou","raw_affiliation_strings":["School of Computer and Information Technology and Beijing Key Laboratory of Traffic Data Analysis and Mining, Beijing Jiaotong University, Beijing, China"],"affiliations":[{"raw_affiliation_string":"School of Computer and Information Technology and Beijing Key Laboratory of Traffic Data Analysis and Mining, Beijing Jiaotong University, Beijing, China","institution_ids":["https://openalex.org/I21193070"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":10,"corresponding_author_ids":["https://openalex.org/A5051184139"],"corresponding_institution_ids":["https://openalex.org/I21193070"],"apc_list":null,"apc_paid":null,"fwci":2.5134,"has_fulltext":true,"cited_by_count":91,"citation_normalized_percentile":{"value":0.90380457,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":96,"max":100},"biblio":{"volume":"23","issue":"4","first_page":"1805","last_page":"1815"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9937000274658203,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6954250931739807},{"id":"https://openalex.org/keywords/similarity","display_name":"Similarity (geometry)","score":0.5512038469314575},{"id":"https://openalex.org/keywords/disease","display_name":"Disease","score":0.5359702110290527},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.5289252996444702},{"id":"https://openalex.org/keywords/gene-regulatory-network","display_name":"Gene regulatory network","score":0.46478840708732605},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.43828338384628296},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.4330528676509857},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4042295217514038},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.37615349888801575},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.3677903413772583},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.15364179015159607},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.14485031366348267},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.10951197147369385},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.10592204332351685}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6954250931739807},{"id":"https://openalex.org/C103278499","wikidata":"https://www.wikidata.org/wiki/Q254465","display_name":"Similarity (geometry)","level":3,"score":0.5512038469314575},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.5359702110290527},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.5289252996444702},{"id":"https://openalex.org/C67339327","wikidata":"https://www.wikidata.org/wiki/Q1502576","display_name":"Gene regulatory network","level":4,"score":0.46478840708732605},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.43828338384628296},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.4330528676509857},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4042295217514038},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.37615349888801575},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.3677903413772583},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.15364179015159607},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.14485031366348267},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.10951197147369385},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.10592204332351685},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.0},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004194","descriptor_name":"Disease","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004194","descriptor_name":"Disease","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004194","descriptor_name":"Disease","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1109/jbhi.2018.2870728","is_oa":true,"landing_page_url":"https://doi.org/10.1109/jbhi.2018.2870728","pdf_url":"https://ieeexplore.ieee.org/ielx7/6221020/8752487/08466588.pdf","source":{"id":"https://openalex.org/S2495854775","display_name":"IEEE Journal of Biomedical and Health Informatics","issn_l":"2168-2194","issn":["2168-2194","2168-2208"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Journal of Biomedical and Health Informatics","raw_type":"journal-article"},{"id":"pmid:31283472","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31283472","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE journal of biomedical and health informatics","raw_type":null}],"best_oa_location":{"id":"doi:10.1109/jbhi.2018.2870728","is_oa":true,"landing_page_url":"https://doi.org/10.1109/jbhi.2018.2870728","pdf_url":"https://ieeexplore.ieee.org/ielx7/6221020/8752487/08466588.pdf","source":{"id":"https://openalex.org/S2495854775","display_name":"IEEE Journal of Biomedical and Health Informatics","issn_l":"2168-2194","issn":["2168-2194","2168-2208"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Journal of Biomedical and Health Informatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1121271761","display_name":null,"funder_award_id":"Program","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G1231421488","display_name":null,"funder_award_id":"under","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G1328851416","display_name":"Joint Performance Optimization of Wireless Networks and Control Systems","funder_award_id":"0140700","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G1634564638","display_name":null,"funder_award_id":"2017YFC1703506","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"},{"id":"https://openalex.org/G2087396116","display_name":null,"funder_award_id":"China","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G2168064904","display_name":null,"funder_award_id":"2013BAI02B01","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"},{"id":"https://openalex.org/G218084534","display_name":null,"funder_award_id":"81230086","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"},{"id":"https://openalex.org/G2516567306","display_name":null,"funder_award_id":"201517","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3317480652","display_name":null,"funder_award_id":"Science","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G391238517","display_name":null,"funder_award_id":", and","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G4464208463","display_name":null,"funder_award_id":"2017YFC1703506","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G466649759","display_name":null,"funder_award_id":"2017Y","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"},{"id":"https://openalex.org/G5053610798","display_name":null,"funder_award_id":"2017YFC","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"},{"id":"https://openalex.org/G5217056730","display_name":null,"funder_award_id":"201407001","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5326156243","display_name":null,"funder_award_id":"1407001","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5711974404","display_name":null,"funder_award_id":"2013BAI02B01","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5733778325","display_name":null,"funder_award_id":"81230086","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5939423041","display_name":null,"funder_award_id":"Technology","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5994494637","display_name":null,"funder_award_id":"and 81","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G6258415954","display_name":null,"funder_award_id":"Chinese","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G7033253288","display_name":null,"funder_award_id":"Grants","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G7042836478","display_name":null,"funder_award_id":"2013BAI13B04","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G7656743553","display_name":null,"funder_award_id":"2013BAI13B04","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"},{"id":"https://openalex.org/G7819998355","display_name":null,"funder_award_id":"812300","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G7994877619","display_name":null,"funder_award_id":"61105055","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"},{"id":"https://openalex.org/G8152133999","display_name":null,"funder_award_id":"61105055","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G8208342437","display_name":null,"funder_award_id":"1 and","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G8340078520","display_name":null,"funder_award_id":"2017YF","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"},{"id":"https://openalex.org/G848032724","display_name":null,"funder_award_id":"Science","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G8902815113","display_name":null,"funder_award_id":"201407","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320335777","display_name":"National Key Research and Development Program of China","ror":null}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2890210261.pdf","grobid_xml":"https://content.openalex.org/works/W2890210261.grobid-xml"},"referenced_works_count":69,"referenced_works":["https://openalex.org/W1530342450","https://openalex.org/W1647856483","https://openalex.org/W1673941785","https://openalex.org/W1870126434","https://openalex.org/W1888005072","https://openalex.org/W1930524906","https://openalex.org/W1971192989","https://openalex.org/W1974944535","https://openalex.org/W1975414584","https://openalex.org/W1976876857","https://openalex.org/W1988892314","https://openalex.org/W2008840001","https://openalex.org/W2020301095","https://openalex.org/W2038122249","https://openalex.org/W2048533654","https://openalex.org/W2056782561","https://openalex.org/W2070412833","https://openalex.org/W2074395112","https://openalex.org/W2080240378","https://openalex.org/W2087634145","https://openalex.org/W2091110954","https://openalex.org/W2097498614","https://openalex.org/W2097532544","https://openalex.org/W2100251770","https://openalex.org/W2100582962","https://openalex.org/W2102377407","https://openalex.org/W2103478816","https://openalex.org/W2104261859","https://openalex.org/W2105813018","https://openalex.org/W2107638877","https://openalex.org/W2109555487","https://openalex.org/W2109991441","https://openalex.org/W2110684048","https://openalex.org/W2117540545","https://openalex.org/W2118607021","https://openalex.org/W2119220491","https://openalex.org/W2121495549","https://openalex.org/W2123699903","https://openalex.org/W2126249571","https://openalex.org/W2127417466","https://openalex.org/W2140239055","https://openalex.org/W2143969840","https://openalex.org/W2144086069","https://openalex.org/W2145805672","https://openalex.org/W2153280946","https://openalex.org/W2154851992","https://openalex.org/W2159767718","https://openalex.org/W2166468869","https://openalex.org/W2170461266","https://openalex.org/W2258406303","https://openalex.org/W2274610632","https://openalex.org/W2297700762","https://openalex.org/W2409852956","https://openalex.org/W2511871973","https://openalex.org/W2517086456","https://openalex.org/W2537623931","https://openalex.org/W2553570933","https://openalex.org/W2557385283","https://openalex.org/W2558586574","https://openalex.org/W2624021832","https://openalex.org/W2753953057","https://openalex.org/W2792771702","https://openalex.org/W2962756421","https://openalex.org/W3104097132","https://openalex.org/W4300871962","https://openalex.org/W6637259173","https://openalex.org/W6639192684","https://openalex.org/W6730316497","https://openalex.org/W7053107269"],"related_works":["https://openalex.org/W2062195135","https://openalex.org/W2375480909","https://openalex.org/W2353314428","https://openalex.org/W2012019886","https://openalex.org/W2166090428","https://openalex.org/W2381021552","https://openalex.org/W2354749003","https://openalex.org/W2377121353","https://openalex.org/W2795079307","https://openalex.org/W2350529538"],"abstract_inverted_index":{"The":[0,199,212,228],"discovery":[1],"of":[2,13,40,57,91,136,145,158,164,176,215,231],"disease-causing":[3],"genes":[4,32,127,218],"is":[5,61],"a":[6,14,18,68,86,112,118],"critical":[7],"step":[8],"towards":[9],"understanding":[10],"the":[11,55,92,95,134,137,141,156,162,170,177,204,209],"nature":[12],"disease":[15,31,58,77,126,146,195,216],"and":[16,44,49,111,148,172,185,225,233],"determining":[17],"possible":[19],"cure":[20],"for":[21,76,152,221],"it.":[22],"In":[23],"recent":[24],"years,":[25],"many":[26],"computational":[27],"methods":[28,191],"to":[29,53,124,132,188],"identify":[30],"have":[33],"been":[34],"proposed.":[35],"However,":[36],"making":[37],"full":[38],"use":[39],"disease-related":[41],"(e.g.,":[42,46],"symptoms)":[43],"gene-related":[45],"gene":[47,59,78,196],"ontology":[48],"protein-protein":[50],"interactions)":[51],"information":[52],"improve":[54],"performance":[56],"prediction":[60,79,110,197,213],"still":[62],"an":[63,107,150],"issue.":[64],"Here,":[65],"we":[66,101,139,180],"develop":[67],"heterogeneous":[69,120],"disease-gene-related":[70],"network":[71,122,174],"(HDGN)":[72],"embedding":[73],"representation":[74,89],"framework":[75],"(called":[80],"HerGePred).":[81],"Based":[82],"on":[83,117],"this":[84],"framework,":[85,138],"low-dimensional":[87],"vector":[88],"(LVR)":[90],"nodes":[93,165],"in":[94],"HDGN":[96],"can":[97],"be":[98],"obtained.":[99],"Then,":[100,179],"propose":[102],"two":[103],"specific":[104],"algorithms,":[105],"namely,":[106],"LVR-based":[108],"similarity":[109],"random":[113],"walk":[114],"with":[115,128,192],"restart":[116],"reconstructed":[119],"disease-gene":[121,153],"(RW-RDGN),":[123],"predict":[125],"high":[129],"performance.":[130],"First,":[131],"validate":[133],"rationality":[135],"analyze":[140],"similarity-based":[142],"overlap":[143],"distribution":[144],"pairs":[147],"design":[149],"experiment":[151],"association":[154],"recovery,":[155],"results":[157,201,214],"which":[159],"revealed":[160],"that":[161,203],"LVR":[163],"performs":[166,206],"well":[167],"at":[168,238],"preserving":[169],"local":[171],"global":[173],"structure":[175],"HDGN.":[178],"apply":[181],"tenfold":[182],"cross":[183],"validation":[184,187],"external":[186],"compare":[189],"our":[190],"other":[193],"well-known":[194],"algorithms.":[198],"experimental":[200,226,234],"show":[202],"RW-RDGN":[205],"better":[207],"than":[208],"state-of-the-art":[210],"algorithm.":[211],"candidate":[217],"are":[219,236],"essential":[220],"molecular":[222],"mechanism":[223],"investigation":[224],"validation.":[227],"source":[229],"codes":[230],"HerGePred":[232],"data":[235],"available":[237],"https://github.com/yangkuoone/HerGePred.":[239]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":13},{"year":2024,"cited_by_count":18},{"year":2023,"cited_by_count":15},{"year":2022,"cited_by_count":17},{"year":2021,"cited_by_count":11},{"year":2020,"cited_by_count":12},{"year":2019,"cited_by_count":4}],"updated_date":"2026-04-13T07:58:08.660418","created_date":"2025-10-10T00:00:00"}
