{"id":"https://openalex.org/W2331587104","doi":"https://doi.org/10.1109/jbhi.2016.2537922","title":"MIGS-GPU: Microarray Image Gridding and Segmentation on the GPU","display_name":"MIGS-GPU: Microarray Image Gridding and Segmentation on the GPU","publication_year":2016,"publication_date":"2016-03-03","ids":{"openalex":"https://openalex.org/W2331587104","doi":"https://doi.org/10.1109/jbhi.2016.2537922","mag":"2331587104","pmid":"https://pubmed.ncbi.nlm.nih.gov/26960232"},"language":"en","primary_location":{"id":"doi:10.1109/jbhi.2016.2537922","is_oa":false,"landing_page_url":"https://doi.org/10.1109/jbhi.2016.2537922","pdf_url":null,"source":{"id":"https://openalex.org/S2495854775","display_name":"IEEE Journal of Biomedical and Health Informatics","issn_l":"2168-2194","issn":["2168-2194","2168-2208"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Journal of Biomedical and Health Informatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://durham-repository.worktribe.com/output/1262243","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5005052027","display_name":"Stamos Katsigiannis","orcid":"https://orcid.org/0000-0001-9190-0941"},"institutions":[{"id":"https://openalex.org/I200777214","display_name":"National and Kapodistrian University of Athens","ror":"https://ror.org/04gnjpq42","country_code":"GR","type":"education","lineage":["https://openalex.org/I200777214"]}],"countries":["GR"],"is_corresponding":true,"raw_author_name":"Stamos Katsigiannis","raw_affiliation_strings":["Real-time Systems and Image Analysis Group, National and Kapodistrian University of Athens, Athens, Greece","Real-time Systems and Image Analysis Group, Department of Informatics and Telecommunications, National and Kapodistrian University of Athens, Athens, Greece"],"affiliations":[{"raw_affiliation_string":"Real-time Systems and Image Analysis Group, National and Kapodistrian University of Athens, Athens, Greece","institution_ids":["https://openalex.org/I200777214"]},{"raw_affiliation_string":"Real-time Systems and Image Analysis Group, Department of Informatics and Telecommunications, National and Kapodistrian University of Athens, Athens, Greece","institution_ids":["https://openalex.org/I200777214"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002984123","display_name":"Eleni Zacharia","orcid":"https://orcid.org/0000-0003-0426-337X"},"institutions":[{"id":"https://openalex.org/I200777214","display_name":"National and Kapodistrian University of Athens","ror":"https://ror.org/04gnjpq42","country_code":"GR","type":"education","lineage":["https://openalex.org/I200777214"]}],"countries":["GR"],"is_corresponding":false,"raw_author_name":"Eleni Zacharia","raw_affiliation_strings":["Real-time Systems and Image Analysis Group, National and Kapodistrian University of Athens, Athens, Greece","Real-time Systems and Image Analysis Group, Department of Informatics and Telecommunications, National and Kapodistrian University of Athens, Athens, Greece"],"affiliations":[{"raw_affiliation_string":"Real-time Systems and Image Analysis Group, National and Kapodistrian University of Athens, Athens, Greece","institution_ids":["https://openalex.org/I200777214"]},{"raw_affiliation_string":"Real-time Systems and Image Analysis Group, Department of Informatics and Telecommunications, National and Kapodistrian University of Athens, Athens, Greece","institution_ids":["https://openalex.org/I200777214"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5044171013","display_name":"Dimitris Maroulis","orcid":"https://orcid.org/0000-0002-2721-9219"},"institutions":[{"id":"https://openalex.org/I200777214","display_name":"National and Kapodistrian University of Athens","ror":"https://ror.org/04gnjpq42","country_code":"GR","type":"education","lineage":["https://openalex.org/I200777214"]}],"countries":["GR"],"is_corresponding":false,"raw_author_name":"Dimitris Maroulis","raw_affiliation_strings":["Real-time Systems and Image Analysis Group, National and Kapodistrian University of Athens, Athens, Greece","Real-time Systems and Image Analysis Group, Department of Informatics and Telecommunications, National and Kapodistrian University of Athens, Athens, Greece"],"affiliations":[{"raw_affiliation_string":"Real-time Systems and Image Analysis Group, National and Kapodistrian University of Athens, Athens, Greece","institution_ids":["https://openalex.org/I200777214"]},{"raw_affiliation_string":"Real-time Systems and Image Analysis Group, Department of Informatics and Telecommunications, National and Kapodistrian University of Athens, Athens, Greece","institution_ids":["https://openalex.org/I200777214"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5005052027"],"corresponding_institution_ids":["https://openalex.org/I200777214"],"apc_list":null,"apc_paid":null,"fwci":1.6673,"has_fulltext":false,"cited_by_count":17,"citation_normalized_percentile":{"value":0.83859424,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":93,"max":98},"biblio":{"volume":"21","issue":"3","first_page":"867","last_page":"874"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9839000105857849,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11975","display_name":"Evolutionary Algorithms and Applications","score":0.9832000136375427,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/cuda","display_name":"CUDA","score":0.8697701692581177},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8281787037849426},{"id":"https://openalex.org/keywords/graphics-processing-unit","display_name":"Graphics processing unit","score":0.7568659782409668},{"id":"https://openalex.org/keywords/coprocessor","display_name":"Coprocessor","score":0.520546555519104},{"id":"https://openalex.org/keywords/general-purpose-computing-on-graphics-processing-units","display_name":"General-purpose computing on graphics processing units","score":0.5033063292503357},{"id":"https://openalex.org/keywords/segmentation","display_name":"Segmentation","score":0.5012626647949219},{"id":"https://openalex.org/keywords/image-segmentation","display_name":"Image segmentation","score":0.46971482038497925},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.44978415966033936},{"id":"https://openalex.org/keywords/noise","display_name":"Noise (video)","score":0.4288784861564636},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.41069144010543823},{"id":"https://openalex.org/keywords/graphics","display_name":"Graphics","score":0.3875816762447357},{"id":"https://openalex.org/keywords/computer-vision","display_name":"Computer vision","score":0.38135480880737305},{"id":"https://openalex.org/keywords/computer-graphics","display_name":"Computer graphics (images)","score":0.3066801428794861},{"id":"https://openalex.org/keywords/parallel-computing","display_name":"Parallel computing","score":0.27326443791389465},{"id":"https://openalex.org/keywords/image","display_name":"Image (mathematics)","score":0.2178557813167572}],"concepts":[{"id":"https://openalex.org/C2778119891","wikidata":"https://www.wikidata.org/wiki/Q477690","display_name":"CUDA","level":2,"score":0.8697701692581177},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8281787037849426},{"id":"https://openalex.org/C2779851693","wikidata":"https://www.wikidata.org/wiki/Q183484","display_name":"Graphics processing unit","level":2,"score":0.7568659782409668},{"id":"https://openalex.org/C86111242","wikidata":"https://www.wikidata.org/wiki/Q859595","display_name":"Coprocessor","level":2,"score":0.520546555519104},{"id":"https://openalex.org/C50630238","wikidata":"https://www.wikidata.org/wiki/Q971505","display_name":"General-purpose computing on graphics processing units","level":3,"score":0.5033063292503357},{"id":"https://openalex.org/C89600930","wikidata":"https://www.wikidata.org/wiki/Q1423946","display_name":"Segmentation","level":2,"score":0.5012626647949219},{"id":"https://openalex.org/C124504099","wikidata":"https://www.wikidata.org/wiki/Q56933","display_name":"Image segmentation","level":3,"score":0.46971482038497925},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.44978415966033936},{"id":"https://openalex.org/C99498987","wikidata":"https://www.wikidata.org/wiki/Q2210247","display_name":"Noise (video)","level":3,"score":0.4288784861564636},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.41069144010543823},{"id":"https://openalex.org/C21442007","wikidata":"https://www.wikidata.org/wiki/Q1027879","display_name":"Graphics","level":2,"score":0.3875816762447357},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.38135480880737305},{"id":"https://openalex.org/C121684516","wikidata":"https://www.wikidata.org/wiki/Q7600677","display_name":"Computer graphics (images)","level":1,"score":0.3066801428794861},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.27326443791389465},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.2178557813167572}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1109/jbhi.2016.2537922","is_oa":false,"landing_page_url":"https://doi.org/10.1109/jbhi.2016.2537922","pdf_url":null,"source":{"id":"https://openalex.org/S2495854775","display_name":"IEEE Journal of Biomedical and Health Informatics","issn_l":"2168-2194","issn":["2168-2194","2168-2208"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Journal of Biomedical and Health Informatics","raw_type":"journal-article"},{"id":"pmid:26960232","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/26960232","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE journal of biomedical and health informatics","raw_type":null},{"id":"pmh:oai:durham-repository.worktribe.com:1262243","is_oa":true,"landing_page_url":"https://durham-repository.worktribe.com/output/1262243","pdf_url":null,"source":{"id":"https://openalex.org/S4306400188","display_name":"Durham Research Online (Durham University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I190082696","host_organization_name":"Durham University","host_organization_lineage":["https://openalex.org/I190082696"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Journal Article"}],"best_oa_location":{"id":"pmh:oai:durham-repository.worktribe.com:1262243","is_oa":true,"landing_page_url":"https://durham-repository.worktribe.com/output/1262243","pdf_url":null,"source":{"id":"https://openalex.org/S4306400188","display_name":"Durham Research Online (Durham University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I190082696","host_organization_name":"Durham University","host_organization_lineage":["https://openalex.org/I190082696"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Journal Article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":34,"referenced_works":["https://openalex.org/W1877206895","https://openalex.org/W1966739776","https://openalex.org/W1968667697","https://openalex.org/W1978307607","https://openalex.org/W1988888548","https://openalex.org/W2001074584","https://openalex.org/W2015674146","https://openalex.org/W2029847324","https://openalex.org/W2036244274","https://openalex.org/W2061095590","https://openalex.org/W2071114836","https://openalex.org/W2097821770","https://openalex.org/W2099376381","https://openalex.org/W2099388441","https://openalex.org/W2099688399","https://openalex.org/W2103371001","https://openalex.org/W2109832421","https://openalex.org/W2110984712","https://openalex.org/W2122510554","https://openalex.org/W2129208168","https://openalex.org/W2137553934","https://openalex.org/W2138423125","https://openalex.org/W2143814091","https://openalex.org/W2145688162","https://openalex.org/W2151225781","https://openalex.org/W2158096909","https://openalex.org/W2163646206","https://openalex.org/W2169490976","https://openalex.org/W2532233046","https://openalex.org/W3149354824","https://openalex.org/W4233622718","https://openalex.org/W4236025197","https://openalex.org/W6674857317","https://openalex.org/W7017344021"],"related_works":["https://openalex.org/W3037029703","https://openalex.org/W2794923745","https://openalex.org/W3087406806","https://openalex.org/W1995571042","https://openalex.org/W3154264674","https://openalex.org/W2503137108","https://openalex.org/W3087273470","https://openalex.org/W2075046026","https://openalex.org/W2613018830","https://openalex.org/W57286261"],"abstract_inverted_index":{"Complementary":[0],"DNA":[1],"(cDNA)":[2],"microarray":[3,22,67,108],"is":[4,69],"a":[5,148],"powerful":[6],"tool":[7,143],"for":[8,63,144],"simultaneously":[9],"studying":[10],"the":[11,19,32,36,50,76,81,95,120,131],"expression":[12],"level":[13],"of":[14,16,21,35,80,97],"thousands":[15],"genes.":[17],"Nevertheless,":[18],"analysis":[20],"images":[23,37,68,109],"remains":[24],"an":[25,139],"arduous":[26],"and":[27,44,55,65,93,105,141],"challenging":[28],"task":[29],"due":[30],"to":[31,89,130,157],"poor":[33],"quality":[34],"that":[38,111,151],"often":[39],"suffer":[40],"from":[41],"noise,":[42],"artifacts,":[43],"uneven":[45],"background.":[46],"In":[47],"this":[48],"study,":[49],"MIGS-GPU":[51,112,136],"[Microarray":[52],"Image":[53],"Gridding":[54],"Segmentation":[56],"on":[57,75,102],"Graphics":[58],"Processing":[59],"Unit":[60],"(GPU)]":[61],"software":[62],"gridding":[64],"segmenting":[66],"presented.":[70],"MIGS-GPU's":[71],"computations":[72],"are":[73],"performed":[74],"GPU":[77,122],"by":[78],"means":[79],"compute":[82],"unified":[83],"device":[84],"architecture":[85],"(CUDA)":[86],"in":[87,155],"order":[88,156],"achieve":[90],"fast":[91],"performance":[92,115],"increase":[94],"utilization":[96],"available":[98],"system":[99],"resources.":[100],"Evaluation":[101],"both":[103],"real":[104],"synthetic":[106],"cDNA":[107],"showed":[110],"provides":[113],"better":[114],"than":[116],"state-of-the-art":[117],"alternatives,":[118],"while":[119],"proposed":[121],"implementation":[123],"achieves":[124],"significantly":[125],"lower":[126],"computational":[127],"times":[128],"compared":[129],"respective":[132],"CPU":[133],"approaches.":[134],"Consequently,":[135],"can":[137],"be":[138],"advantageous":[140],"useful":[142],"biomedical":[145],"laboratories,":[146],"offering":[147],"user-friendly":[149],"interface":[150],"requires":[152],"minimum":[153],"input":[154],"run.":[158]},"counts_by_year":[{"year":2023,"cited_by_count":2},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":4},{"year":2018,"cited_by_count":4},{"year":2016,"cited_by_count":2}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
