{"id":"https://openalex.org/W3192988454","doi":"https://doi.org/10.1109/jas.2021.1004198","title":"A Distributed Framework for Large-scale Protein-protein Interaction Data Analysis and Prediction Using MapReduce","display_name":"A Distributed Framework for Large-scale Protein-protein Interaction Data Analysis and Prediction Using MapReduce","publication_year":2021,"publication_date":"2021-07-28","ids":{"openalex":"https://openalex.org/W3192988454","doi":"https://doi.org/10.1109/jas.2021.1004198","mag":"3192988454"},"language":"en","primary_location":{"id":"doi:10.1109/jas.2021.1004198","is_oa":false,"landing_page_url":"https://doi.org/10.1109/jas.2021.1004198","pdf_url":null,"source":{"id":"https://openalex.org/S2484288132","display_name":"IEEE/CAA Journal of Automatica Sinica","issn_l":"2329-9266","issn":["2329-9266","2329-9274"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/CAA Journal of Automatica Sinica","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5008221100","display_name":"Lun Hu","orcid":"https://orcid.org/0000-0002-1591-8549"},"institutions":[{"id":"https://openalex.org/I2799850029","display_name":"Dongguan University of Technology","ror":"https://ror.org/01m8p7q42","country_code":"CN","type":"education","lineage":["https://openalex.org/I2799850029"]},{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"funder","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210106108","display_name":"Xinjiang Technical Institute of Physics & Chemistry","ror":"https://ror.org/00x44h034","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210106108"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Lun Hu","raw_affiliation_strings":["School of Computer Science and Technology, Dongguan University of Technology, Dongguan, China","Xinjiang Technical Institute of Physics and Chemistry, Chinese Academy of Sciences, Urumqi, China"],"affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, Dongguan University of Technology, Dongguan, China","institution_ids":["https://openalex.org/I2799850029"]},{"raw_affiliation_string":"Xinjiang Technical Institute of Physics and Chemistry, Chinese Academy of Sciences, Urumqi, China","institution_ids":["https://openalex.org/I4210106108","https://openalex.org/I19820366"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023734401","display_name":"Shicheng Yang","orcid":"https://orcid.org/0000-0003-0166-7168"},"institutions":[{"id":"https://openalex.org/I196699116","display_name":"Wuhan University of Technology","ror":"https://ror.org/03fe7t173","country_code":"CN","type":"education","lineage":["https://openalex.org/I196699116"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Shicheng Yang","raw_affiliation_strings":["School of Computer Science and Technology, Wuhan University of Technology, Wuhan, China"],"affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, Wuhan University of Technology, Wuhan, China","institution_ids":["https://openalex.org/I196699116"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088955392","display_name":"Xin Luo","orcid":"https://orcid.org/0000-0002-1348-5305"},"institutions":[{"id":"https://openalex.org/I2799850029","display_name":"Dongguan University of Technology","ror":"https://ror.org/01m8p7q42","country_code":"CN","type":"education","lineage":["https://openalex.org/I2799850029"]},{"id":"https://openalex.org/I4210123021","display_name":"Chongqing Institute of Green and Intelligent Technology","ror":"https://ror.org/031npqv35","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210123021"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xin Luo","raw_affiliation_strings":["Chongqing Engineering Research Center of Big Data Application for Smart Cities and Chongqing Key Laboratory of Big Data and Intelligent Computing, Chongqing Institute of Green and Intelligent Technology, Chinese Academy of Sciences, Chongqing, China","School of Computer Science and Technology, Dongguan University of Technology, Dongguan, China"],"affiliations":[{"raw_affiliation_string":"Chongqing Engineering Research Center of Big Data Application for Smart Cities and Chongqing Key Laboratory of Big Data and Intelligent Computing, Chongqing Institute of Green and Intelligent Technology, Chinese Academy of Sciences, Chongqing, China","institution_ids":["https://openalex.org/I4210123021"]},{"raw_affiliation_string":"School of Computer Science and Technology, Dongguan University of Technology, Dongguan, China","institution_ids":["https://openalex.org/I2799850029"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101191958","display_name":"Huaqiang Yuan","orcid":null},"institutions":[{"id":"https://openalex.org/I2799850029","display_name":"Dongguan University of Technology","ror":"https://ror.org/01m8p7q42","country_code":"CN","type":"education","lineage":["https://openalex.org/I2799850029"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Huaqiang Yuan","raw_affiliation_strings":["School of Computer Science and Technology, Dongguan University of Technology, Dongguan, China"],"affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, Dongguan University of Technology, Dongguan, China","institution_ids":["https://openalex.org/I2799850029"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079826606","display_name":"Khaled Sedraoui","orcid":"https://orcid.org/0000-0002-6216-0208"},"institutions":[{"id":"https://openalex.org/I185163786","display_name":"King Abdulaziz University","ror":"https://ror.org/02ma4wv74","country_code":"SA","type":"education","lineage":["https://openalex.org/I185163786"]}],"countries":["SA"],"is_corresponding":false,"raw_author_name":"Khaled Sedraoui","raw_affiliation_strings":["Department of Electrical and Computer Engineering, Center of Research Excellence in Renewable Energy and Power Systems, Faculty of Engineering, King Abdulaziz University, Jeddah, Saudi Arabia"],"affiliations":[{"raw_affiliation_string":"Department of Electrical and Computer Engineering, Center of Research Excellence in Renewable Energy and Power Systems, Faculty of Engineering, King Abdulaziz University, Jeddah, Saudi Arabia","institution_ids":["https://openalex.org/I185163786"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5081318069","display_name":"MengChu Zhou","orcid":"https://orcid.org/0000-0002-5408-8752"},"institutions":[{"id":"https://openalex.org/I118118575","display_name":"New Jersey Institute of Technology","ror":"https://ror.org/05e74xb87","country_code":"US","type":"education","lineage":["https://openalex.org/I118118575"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"MengChu Zhou","raw_affiliation_strings":["Department of Electrical and Computer Engineering, New Jersey Institute of Technology, Newark, NJ, USA"],"affiliations":[{"raw_affiliation_string":"Department of Electrical and Computer Engineering, New Jersey Institute of Technology, Newark, NJ, USA","institution_ids":["https://openalex.org/I118118575"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5008221100"],"corresponding_institution_ids":["https://openalex.org/I19820366","https://openalex.org/I2799850029","https://openalex.org/I4210106108"],"apc_list":null,"apc_paid":null,"fwci":5.8724,"has_fulltext":false,"cited_by_count":83,"citation_normalized_percentile":{"value":0.97466997,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":93,"max":100},"biblio":{"volume":"9","issue":"1","first_page":"160","last_page":"172"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9739000201225281,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.9638000130653381,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.840078592300415},{"id":"https://openalex.org/keywords/tree","display_name":"Tree (set theory)","score":0.5570409297943115},{"id":"https://openalex.org/keywords/scale","display_name":"Scale (ratio)","score":0.5243266224861145},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.5158771276473999},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.5106213688850403},{"id":"https://openalex.org/keywords/big-data","display_name":"Big data","score":0.4725085198879242},{"id":"https://openalex.org/keywords/throughput","display_name":"Throughput","score":0.45896223187446594},{"id":"https://openalex.org/keywords/distributed-computing","display_name":"Distributed computing","score":0.3999020457267761}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.840078592300415},{"id":"https://openalex.org/C113174947","wikidata":"https://www.wikidata.org/wiki/Q2859736","display_name":"Tree (set theory)","level":2,"score":0.5570409297943115},{"id":"https://openalex.org/C2778755073","wikidata":"https://www.wikidata.org/wiki/Q10858537","display_name":"Scale (ratio)","level":2,"score":0.5243266224861145},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.5158771276473999},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.5106213688850403},{"id":"https://openalex.org/C75684735","wikidata":"https://www.wikidata.org/wiki/Q858810","display_name":"Big data","level":2,"score":0.4725085198879242},{"id":"https://openalex.org/C157764524","wikidata":"https://www.wikidata.org/wiki/Q1383412","display_name":"Throughput","level":3,"score":0.45896223187446594},{"id":"https://openalex.org/C120314980","wikidata":"https://www.wikidata.org/wiki/Q180634","display_name":"Distributed computing","level":1,"score":0.3999020457267761},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C555944384","wikidata":"https://www.wikidata.org/wiki/Q249","display_name":"Wireless","level":2,"score":0.0},{"id":"https://openalex.org/C187736073","wikidata":"https://www.wikidata.org/wiki/Q2920921","display_name":"Management","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C76155785","wikidata":"https://www.wikidata.org/wiki/Q418","display_name":"Telecommunications","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/jas.2021.1004198","is_oa":false,"landing_page_url":"https://doi.org/10.1109/jas.2021.1004198","pdf_url":null,"source":{"id":"https://openalex.org/S2484288132","display_name":"IEEE/CAA Journal of Automatica Sinica","issn_l":"2329-9266","issn":["2329-9266","2329-9274"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/CAA Journal of Automatica Sinica","raw_type":"journal-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G7777850861","display_name":null,"funder_award_id":"61772493","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":60,"referenced_works":["https://openalex.org/W1533936090","https://openalex.org/W1598064945","https://openalex.org/W1804250401","https://openalex.org/W1980334039","https://openalex.org/W1982267716","https://openalex.org/W2032408510","https://openalex.org/W2040177576","https://openalex.org/W2045131140","https://openalex.org/W2057885377","https://openalex.org/W2087322782","https://openalex.org/W2095503032","https://openalex.org/W2099862356","https://openalex.org/W2105924489","https://openalex.org/W2107424557","https://openalex.org/W2109248504","https://openalex.org/W2122863289","https://openalex.org/W2134197776","https://openalex.org/W2145427519","https://openalex.org/W2146312020","https://openalex.org/W2146764011","https://openalex.org/W2149310258","https://openalex.org/W2152568394","https://openalex.org/W2161701113","https://openalex.org/W2189465200","https://openalex.org/W2258637354","https://openalex.org/W2265278721","https://openalex.org/W2512825928","https://openalex.org/W2603572482","https://openalex.org/W2618265628","https://openalex.org/W2751476207","https://openalex.org/W2806781084","https://openalex.org/W2811487611","https://openalex.org/W2885583144","https://openalex.org/W2887183215","https://openalex.org/W2895109358","https://openalex.org/W2906170845","https://openalex.org/W2917746835","https://openalex.org/W2921483425","https://openalex.org/W2943186426","https://openalex.org/W2950686248","https://openalex.org/W2950729596","https://openalex.org/W2950742983","https://openalex.org/W2978341006","https://openalex.org/W2979223698","https://openalex.org/W2986694199","https://openalex.org/W2990595039","https://openalex.org/W2992088654","https://openalex.org/W2995564009","https://openalex.org/W3004919223","https://openalex.org/W3006625545","https://openalex.org/W3016984854","https://openalex.org/W3045012301","https://openalex.org/W3087406311","https://openalex.org/W3093966514","https://openalex.org/W3096959625","https://openalex.org/W3125444135","https://openalex.org/W3134169372","https://openalex.org/W3139910489","https://openalex.org/W4252706339","https://openalex.org/W6687322159"],"related_works":["https://openalex.org/W4390608645","https://openalex.org/W4247566972","https://openalex.org/W4394895745","https://openalex.org/W2960264696","https://openalex.org/W3090563135","https://openalex.org/W2497432351","https://openalex.org/W4206777497","https://openalex.org/W2910064364","https://openalex.org/W4200136508","https://openalex.org/W2499527417"],"abstract_inverted_index":{"Protein-protein":[0],"interactions":[1],"are":[2,90],"of":[3,13,19,52,65,73,118,139,149,154,178],"great":[4],"significance":[5],"for":[6,81],"human":[7],"to":[8,35,93,106,131,145],"understand":[9],"the":[10,16,71,108,114,128,133,147,164,182],"functional":[11],"mechanisms":[12],"proteins.":[14,119],"With":[15],"rapid":[17],"development":[18],"high-throughput":[20],"genomic":[21],"technologies,":[22],"massive":[23],"protein-protein":[24],"interaction":[25],"(PPI)":[26],"data":[27,84,104],"have":[28,142],"been":[29,143],"generated,":[30],"making":[31],"it":[32,80],"very":[33],"difficult":[34],"analyze":[36],"them":[37],"efficiently.":[38],"To":[39,59],"address":[40],"this":[41,43],"problem,":[42],"paper":[44],"presents":[45],"a":[46,101],"distributed":[47],"framework":[48,130,151,166],"by":[49,113,126,173],"reimplementing":[50],"one":[51],"state-of-the-art":[53],"algorithms,":[54],"i.e.,":[55],"CoFex,":[56],"using":[57],"MapReduce.":[58],"do":[60],"so,":[61],"an":[62],"in-depth":[63],"analysis":[64,85],"its":[66,122,170],"limitations":[67],"is":[68,124],"conducted":[69,144],"from":[70],"perspectives":[72],"efficiency":[74,156,172],"and":[75,86,157],"memory":[76,110],"consumption":[77,111],"when":[78],"applying":[79],"large-scale":[82],"PPI":[83],"prediction.":[87],"Respective":[88],"solutions":[89],"then":[91],"devised":[92],"overcome":[94],"these":[95],"limitations.":[96],"In":[97],"particular,":[98],"we":[99],"adopt":[100],"novel":[102],"tree-based":[103],"structure":[105],"reduce":[107],"heavy":[109],"caused":[112],"huge":[115],"sequence":[116],"information":[117],"After":[120],"that,":[121],"procedure":[123],"modified":[125],"following":[127],"MapReduce":[129],"take":[132],"prediction":[134],"task":[135],"distributively.":[136],"A":[137],"series":[138],"extensive":[140],"experiments":[141],"evaluate":[146],"performance":[148],"our":[150],"in":[152],"terms":[153],"both":[155],"accuracy.":[158,185],"Experimental":[159],"results":[160],"well":[161],"demonstrate":[162],"that":[163],"proposed":[165],"can":[167],"considerably":[168],"improve":[169],"computational":[171],"more":[174],"than":[175],"two":[176],"orders":[177],"magnitude":[179],"while":[180],"retaining":[181],"same":[183],"high":[184]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":9},{"year":2024,"cited_by_count":16},{"year":2023,"cited_by_count":32},{"year":2022,"cited_by_count":23},{"year":2021,"cited_by_count":2}],"updated_date":"2026-02-25T08:12:03.925757","created_date":"2025-10-10T00:00:00"}
