{"id":"https://openalex.org/W2889758434","doi":"https://doi.org/10.1109/iwobi.2018.8464190","title":"Modules of Correlated Genes in a Gene Expression Regulatory Network of CDDP-Resistant Cancer Cells","display_name":"Modules of Correlated Genes in a Gene Expression Regulatory Network of CDDP-Resistant Cancer Cells","publication_year":2018,"publication_date":"2018-07-01","ids":{"openalex":"https://openalex.org/W2889758434","doi":"https://doi.org/10.1109/iwobi.2018.8464190","mag":"2889758434"},"language":"en","primary_location":{"id":"doi:10.1109/iwobi.2018.8464190","is_oa":false,"landing_page_url":"https://doi.org/10.1109/iwobi.2018.8464190","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2018 IEEE International Work Conference on Bioinspired Intelligence (IWOBI)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5006228705","display_name":"Dennis Jimenez-Vargas","orcid":null},"institutions":[{"id":"https://openalex.org/I31944674","display_name":"Universidad de Costa Rica","ror":"https://ror.org/02yzgww51","country_code":"CR","type":"education","lineage":["https://openalex.org/I31944674"]}],"countries":["CR"],"is_corresponding":true,"raw_author_name":"Dennis Jimenez-Vargas","raw_affiliation_strings":["Posgrado en Ciencias Biom\u00e9dicas, Universidad de Costa Rica, San Jos\u00e9, Costa Rica"],"affiliations":[{"raw_affiliation_string":"Posgrado en Ciencias Biom\u00e9dicas, Universidad de Costa Rica, San Jos\u00e9, Costa Rica","institution_ids":["https://openalex.org/I31944674"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5112385983","display_name":"Man Sai Acon","orcid":null},"institutions":[{"id":"https://openalex.org/I31944674","display_name":"Universidad de Costa Rica","ror":"https://ror.org/02yzgww51","country_code":"CR","type":"education","lineage":["https://openalex.org/I31944674"]}],"countries":["CR"],"is_corresponding":false,"raw_author_name":"Man Sai Acon","raw_affiliation_strings":["Posgrado en Ciencias Biom\u00e9dicas, Universidad de Costa Rica, San Jos\u00e9, Costa Rica"],"affiliations":[{"raw_affiliation_string":"Posgrado en Ciencias Biom\u00e9dicas, Universidad de Costa Rica, San Jos\u00e9, Costa Rica","institution_ids":["https://openalex.org/I31944674"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015539963","display_name":"\u00d6zg\u00fcr \u015eahin","orcid":"https://orcid.org/0000-0002-8033-7089"},"institutions":[{"id":"https://openalex.org/I168864056","display_name":"Bilkent University","ror":"https://ror.org/02vh8a032","country_code":"TR","type":"education","lineage":["https://openalex.org/I168864056"]}],"countries":["TR"],"is_corresponding":false,"raw_author_name":"Ozgur Sahin","raw_affiliation_strings":["Department of Molecular Biology and Genetics, Bilkent University, Ankara, Turkey"],"affiliations":[{"raw_affiliation_string":"Department of Molecular Biology and Genetics, Bilkent University, Ankara, Turkey","institution_ids":["https://openalex.org/I168864056"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091611307","display_name":"Erol Ey\u00fcpo\u011flu","orcid":null},"institutions":[{"id":"https://openalex.org/I168864056","display_name":"Bilkent University","ror":"https://ror.org/02vh8a032","country_code":"TR","type":"education","lineage":["https://openalex.org/I168864056"]}],"countries":["TR"],"is_corresponding":false,"raw_author_name":"Erol Eyupoglu","raw_affiliation_strings":["Department of Molecular Biology and Genetics, Bilkent University, Ankara, Turkey"],"affiliations":[{"raw_affiliation_string":"Department of Molecular Biology and Genetics, Bilkent University, Ankara, Turkey","institution_ids":["https://openalex.org/I168864056"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064882820","display_name":"Yasser Riazalhosseini","orcid":"https://orcid.org/0000-0003-0875-618X"},"institutions":[{"id":"https://openalex.org/I5023651","display_name":"McGill University","ror":"https://ror.org/01pxwe438","country_code":"CA","type":"education","lineage":["https://openalex.org/I5023651"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Yasser Riazalhosseini","raw_affiliation_strings":["Department of Human Genetics, McGill University, Quebec, Canada"],"affiliations":[{"raw_affiliation_string":"Department of Human Genetics, McGill University, Quebec, Canada","institution_ids":["https://openalex.org/I5023651"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031007270","display_name":"Jos\u00e9 Arturo Molina-Mora","orcid":"https://orcid.org/0000-0001-9764-4192"},"institutions":[{"id":"https://openalex.org/I31944674","display_name":"Universidad de Costa Rica","ror":"https://ror.org/02yzgww51","country_code":"CR","type":"education","lineage":["https://openalex.org/I31944674"]}],"countries":["CR"],"is_corresponding":false,"raw_author_name":"Jose Molina-Mora","raw_affiliation_strings":["CIET, Universidad de Costa Rica, San Jos\u00e9, Costa Rica"],"affiliations":[{"raw_affiliation_string":"CIET, Universidad de Costa Rica, San Jos\u00e9, Costa Rica","institution_ids":["https://openalex.org/I31944674"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064398867","display_name":"Jos\u00e9 Guevara-Coto","orcid":"https://orcid.org/0000-0001-9447-4132"},"institutions":[{"id":"https://openalex.org/I31944674","display_name":"Universidad de Costa Rica","ror":"https://ror.org/02yzgww51","country_code":"CR","type":"education","lineage":["https://openalex.org/I31944674"]}],"countries":["CR"],"is_corresponding":false,"raw_author_name":"Jose Guevara-Coto","raw_affiliation_strings":["CIBCM / Escuela de Biolog\u00ed a, Universidad de Costa Rica, San Jos\u00e9, Costa Rica"],"affiliations":[{"raw_affiliation_string":"CIBCM / Escuela de Biolog\u00ed a, Universidad de Costa Rica, San Jos\u00e9, Costa Rica","institution_ids":["https://openalex.org/I31944674"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5079080087","display_name":"Rodrigo Mora-Rodr\u00edguez","orcid":null},"institutions":[{"id":"https://openalex.org/I31944674","display_name":"Universidad de Costa Rica","ror":"https://ror.org/02yzgww51","country_code":"CR","type":"education","lineage":["https://openalex.org/I31944674"]}],"countries":["CR"],"is_corresponding":false,"raw_author_name":"Rodrigo Mora-Rodriguez","raw_affiliation_strings":["Facultad de Microbiolog\u00ed a, Universidad de Costa Rica, San Jos\u00e9, Costa Rica"],"affiliations":[{"raw_affiliation_string":"Facultad de Microbiolog\u00ed a, Universidad de Costa Rica, San Jos\u00e9, Costa Rica","institution_ids":["https://openalex.org/I31944674"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5006228705"],"corresponding_institution_ids":["https://openalex.org/I31944674"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.12549072,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"8","issue":null,"first_page":"1","last_page":"6"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T13779","display_name":"Cancer Mechanisms and Therapy","score":0.98580002784729,"subfield":{"id":"https://openalex.org/subfields/2734","display_name":"Pathology and Forensic Medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T13779","display_name":"Cancer Mechanisms and Therapy","score":0.98580002784729,"subfield":{"id":"https://openalex.org/subfields/2734","display_name":"Pathology and Forensic Medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10269","display_name":"Epigenetics and DNA Methylation","score":0.9836000204086304,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11845","display_name":"Cancer therapeutics and mechanisms","score":0.982200026512146,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.6699057817459106},{"id":"https://openalex.org/keywords/microrna","display_name":"microRNA","score":0.6599902510643005},{"id":"https://openalex.org/keywords/in-silico","display_name":"In silico","score":0.6325938701629639},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.6294636726379395},{"id":"https://openalex.org/keywords/gene-regulatory-network","display_name":"Gene regulatory network","score":0.6145311594009399},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5900296568870544},{"id":"https://openalex.org/keywords/phenotype","display_name":"Phenotype","score":0.5373626351356506},{"id":"https://openalex.org/keywords/systems-biology","display_name":"Systems biology","score":0.4869345426559448},{"id":"https://openalex.org/keywords/cisplatin","display_name":"Cisplatin","score":0.4748190641403198},{"id":"https://openalex.org/keywords/transcription-factor","display_name":"Transcription factor","score":0.4578723907470703},{"id":"https://openalex.org/keywords/transcriptome","display_name":"Transcriptome","score":0.43345212936401367},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.3861764371395111},{"id":"https://openalex.org/keywords/cancer-research","display_name":"Cancer research","score":0.3453143835067749},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.3356449007987976},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.3232620358467102},{"id":"https://openalex.org/keywords/chemotherapy","display_name":"Chemotherapy","score":0.2101726531982422}],"concepts":[{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.6699057817459106},{"id":"https://openalex.org/C145059251","wikidata":"https://www.wikidata.org/wiki/Q310899","display_name":"microRNA","level":3,"score":0.6599902510643005},{"id":"https://openalex.org/C2775905019","wikidata":"https://www.wikidata.org/wiki/Q192572","display_name":"In silico","level":3,"score":0.6325938701629639},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6294636726379395},{"id":"https://openalex.org/C67339327","wikidata":"https://www.wikidata.org/wiki/Q1502576","display_name":"Gene regulatory network","level":4,"score":0.6145311594009399},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5900296568870544},{"id":"https://openalex.org/C127716648","wikidata":"https://www.wikidata.org/wiki/Q104053","display_name":"Phenotype","level":3,"score":0.5373626351356506},{"id":"https://openalex.org/C152662350","wikidata":"https://www.wikidata.org/wiki/Q815297","display_name":"Systems biology","level":2,"score":0.4869345426559448},{"id":"https://openalex.org/C2778239845","wikidata":"https://www.wikidata.org/wiki/Q412415","display_name":"Cisplatin","level":3,"score":0.4748190641403198},{"id":"https://openalex.org/C86339819","wikidata":"https://www.wikidata.org/wiki/Q407384","display_name":"Transcription factor","level":3,"score":0.4578723907470703},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.43345212936401367},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.3861764371395111},{"id":"https://openalex.org/C502942594","wikidata":"https://www.wikidata.org/wiki/Q3421914","display_name":"Cancer research","level":1,"score":0.3453143835067749},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.3356449007987976},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3232620358467102},{"id":"https://openalex.org/C2776694085","wikidata":"https://www.wikidata.org/wiki/Q974135","display_name":"Chemotherapy","level":2,"score":0.2101726531982422}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1109/iwobi.2018.8464190","is_oa":false,"landing_page_url":"https://doi.org/10.1109/iwobi.2018.8464190","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2018 IEEE International Work Conference on Bioinspired Intelligence (IWOBI)","raw_type":"proceedings-article"},{"id":"pmh:oai:repository.bilkent.edu.tr:11693/50192","is_oa":false,"landing_page_url":"http://hdl.handle.net/11693/50192","pdf_url":null,"source":{"id":"https://openalex.org/S4306400079","display_name":"Bilkent University Institutional Repository (Bilkent University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I168864056","host_organization_name":"Bilkent University","host_organization_lineage":["https://openalex.org/I168864056"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"2018 IEEE International Work Conference on Bioinspired Intelligence (IWOBI)","raw_type":"Conference Paper"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/3","score":0.8399999737739563,"display_name":"Good health and well-being"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":20,"referenced_works":["https://openalex.org/W1966327575","https://openalex.org/W1967925377","https://openalex.org/W1987604182","https://openalex.org/W2019156893","https://openalex.org/W2037678485","https://openalex.org/W2092677877","https://openalex.org/W2093829713","https://openalex.org/W2098627399","https://openalex.org/W2117692326","https://openalex.org/W2150782426","https://openalex.org/W2153906296","https://openalex.org/W2159515687","https://openalex.org/W2164277862","https://openalex.org/W2171115585","https://openalex.org/W2410637760","https://openalex.org/W2621768820","https://openalex.org/W2802418446","https://openalex.org/W6641852226","https://openalex.org/W6659974712","https://openalex.org/W6684863267"],"related_works":["https://openalex.org/W2091461259","https://openalex.org/W2949927938","https://openalex.org/W2029387041","https://openalex.org/W2135896045","https://openalex.org/W1973268559","https://openalex.org/W2884256268","https://openalex.org/W2131025197","https://openalex.org/W2031892952","https://openalex.org/W3108451992","https://openalex.org/W2171763327"],"abstract_inverted_index":{"Chemotherapeutic":[0],"drugs":[1],"have":[2],"been":[3],"used":[4,107],"as":[5,108],"important":[6],"strategies":[7,196],"in":[8,16,53,73],"cancer":[9,64,94],"treatment.":[10],"However,":[11],"chemotherapy-resistant":[12],"tumors":[13],"arise":[14],"especially":[15],"relapsing":[17],"and":[18,102,114,137,156,162,190],"progressive":[19],"disease.":[20],"Understanding":[21],"of":[22,40,56,62,70,81,86,116,139,148,166,183,188,194],"mechanisms":[23],"underlaying":[24],"Cisplatin-CDDP":[25],"chemotherapy":[26],"resistance":[27],"may":[28],"help":[29],"find":[30],"new":[31],"therapeutic":[32,195],"targets":[33,110],"to":[34,50,180,197],"revert":[35],"this":[36,41,74],"phenotype.":[37,83],"The":[38],"aim":[39],"work,":[42],"through":[43],"an":[44,52],"integrative":[45],"Systems":[46],"Biology":[47],"approach,":[48],"is":[49],"optimize":[51],"silico":[54],"model":[55,124,147],"TFs-miRNAs":[57],"gene":[58,99,174],"expression":[59],"regulatory":[60,75,186],"network":[61,76],"CDDP-chemoresistant":[63,82,93],"cell":[65,95],"lines.":[66],"By":[67],"identifying":[68],"modules":[69,138,165],"co-expressed":[71],"genes":[72,88,105,141,168],"we":[77],"expect":[78],"further":[79],"understanding":[80,182],"A":[84,146],"set":[85],"deregulated":[87,150],"was":[89,133,159],"determined":[90,143,170],"for":[91,111],"two":[92],"lines":[96],"by":[97],"considering":[98],"copy":[100],"number":[101],"transcriptomics.":[103],"These":[104],"were":[106,142,169],"input":[109],"the":[112,181,184,191],"construction":[113],"fitting":[115],"a":[117],"large":[118],"scale":[119],"ordinary":[120],"differential":[121],"equations":[122],"(ODE)":[123],"using":[125,135,144],"our":[126],"biocomputational":[127],"platform":[128],"previously":[129],"reported.":[130],"Model":[131],"optimization":[132],"performed":[134],"COPASI":[136],"correlated":[140,167],"WGCNA.":[145],"108":[149],"target":[151],"genes,":[152],"44":[153],"transcription":[154],"factors":[155],"21":[157],"miRNAs":[158],"successfully":[160],"constructed":[161],"optimized.":[163],"Eleven":[164],"along":[171],"with":[172],"their":[173],"product":[175],"annotation.":[176],"This":[177],"report":[178],"contributes":[179],"complex":[185],"networks":[187],"CDDP-resistance":[189],"future":[192],"design":[193],"overcome":[198],"drug":[199],"resistance.":[200]},"counts_by_year":[],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2018-09-27T00:00:00"}
