{"id":"https://openalex.org/W2558862764","doi":"https://doi.org/10.1109/ivcnz.2015.7761512","title":"Automatic alignment and comparison on images of petri dishes containing cell colonies","display_name":"Automatic alignment and comparison on images of petri dishes containing cell colonies","publication_year":2015,"publication_date":"2015-11-01","ids":{"openalex":"https://openalex.org/W2558862764","doi":"https://doi.org/10.1109/ivcnz.2015.7761512","mag":"2558862764"},"language":"en","primary_location":{"id":"doi:10.1109/ivcnz.2015.7761512","is_oa":false,"landing_page_url":"https://doi.org/10.1109/ivcnz.2015.7761512","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2015 International Conference on Image and Vision Computing New Zealand (IVCNZ)","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5103724207","display_name":"Safar Alqahtani","orcid":null},"institutions":[{"id":"https://openalex.org/I51158804","display_name":"Massey University","ror":"https://ror.org/052czxv31","country_code":"NZ","type":"education","lineage":["https://openalex.org/I51158804"]}],"countries":["NZ"],"is_corresponding":false,"raw_author_name":"Safar Alqahtani","raw_affiliation_strings":["Computer Science INMS - Massey University, Auckland, New Zealand"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computer Science INMS - Massey University, Auckland, New Zealand","institution_ids":["https://openalex.org/I51158804"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5018208301","display_name":"Andre L. C. Barczak","orcid":"https://orcid.org/0000-0001-7648-285X"},"institutions":[{"id":"https://openalex.org/I51158804","display_name":"Massey University","ror":"https://ror.org/052czxv31","country_code":"NZ","type":"education","lineage":["https://openalex.org/I51158804"]}],"countries":["NZ"],"is_corresponding":false,"raw_author_name":"Andre Barczak","raw_affiliation_strings":["Computer Science INMS - Massey University, Auckland, New Zealand"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computer Science INMS - Massey University, Auckland, New Zealand","institution_ids":["https://openalex.org/I51158804"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088177066","display_name":"Napoleon H. Reyes","orcid":"https://orcid.org/0000-0002-0683-436X"},"institutions":[{"id":"https://openalex.org/I51158804","display_name":"Massey University","ror":"https://ror.org/052czxv31","country_code":"NZ","type":"education","lineage":["https://openalex.org/I51158804"]}],"countries":["NZ"],"is_corresponding":false,"raw_author_name":"Napoleon Reyes","raw_affiliation_strings":["Computer Science INMS - Massey University, Auckland, New Zealand"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computer Science INMS - Massey University, Auckland, New Zealand","institution_ids":["https://openalex.org/I51158804"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037915797","display_name":"Teo Su\u0161njak","orcid":"https://orcid.org/0000-0001-9416-1435"},"institutions":[{"id":"https://openalex.org/I51158804","display_name":"Massey University","ror":"https://ror.org/052czxv31","country_code":"NZ","type":"education","lineage":["https://openalex.org/I51158804"]}],"countries":["NZ"],"is_corresponding":false,"raw_author_name":"Teo Susnjak","raw_affiliation_strings":["Information Technology SEAT - Massey University, Auckland, New Zealand"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Information Technology SEAT - Massey University, Auckland, New Zealand","institution_ids":["https://openalex.org/I51158804"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5060918113","display_name":"Austen R. D. Ganley","orcid":"https://orcid.org/0000-0002-1917-7522"},"institutions":[{"id":"https://openalex.org/I51158804","display_name":"Massey University","ror":"https://ror.org/052czxv31","country_code":"NZ","type":"education","lineage":["https://openalex.org/I51158804"]}],"countries":["NZ"],"is_corresponding":false,"raw_author_name":"Austen Ganley","raw_affiliation_strings":["Biology INMS - Massey University, Auckland, New Zealand"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biology INMS - Massey University, Auckland, New Zealand","institution_ids":["https://openalex.org/I51158804"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I51158804"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.27875834,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"xxxvii","issue":null,"first_page":"1","last_page":"6"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10627","display_name":"Advanced Image and Video Retrieval Techniques","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10627","display_name":"Advanced Image and Video Retrieval Techniques","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9976999759674072,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10824","display_name":"Image Retrieval and Classification Techniques","score":0.996999979019165,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/petri-dish","display_name":"Petri dish","score":0.7761003375053406},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6649349927902222},{"id":"https://openalex.org/keywords/scale-invariant-feature-transform","display_name":"Scale-invariant feature transform","score":0.6118963956832886},{"id":"https://openalex.org/keywords/ransac","display_name":"RANSAC","score":0.5191742181777954},{"id":"https://openalex.org/keywords/shearing","display_name":"Shearing (physics)","score":0.4953085482120514},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.47059762477874756},{"id":"https://openalex.org/keywords/triangulation","display_name":"Triangulation","score":0.45780491828918457},{"id":"https://openalex.org/keywords/computer-vision","display_name":"Computer vision","score":0.45224225521087646},{"id":"https://openalex.org/keywords/position","display_name":"Position (finance)","score":0.44373437762260437},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.4312899112701416},{"id":"https://openalex.org/keywords/image","display_name":"Image (mathematics)","score":0.3518335223197937},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.22800201177597046},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.08047518134117126},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.07620000839233398}],"concepts":[{"id":"https://openalex.org/C146763376","wikidata":"https://www.wikidata.org/wiki/Q81714","display_name":"Petri dish","level":2,"score":0.7761003375053406},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6649349927902222},{"id":"https://openalex.org/C61265191","wikidata":"https://www.wikidata.org/wiki/Q767770","display_name":"Scale-invariant feature transform","level":3,"score":0.6118963956832886},{"id":"https://openalex.org/C114744707","wikidata":"https://www.wikidata.org/wiki/Q218533","display_name":"RANSAC","level":3,"score":0.5191742181777954},{"id":"https://openalex.org/C152279782","wikidata":"https://www.wikidata.org/wiki/Q13583542","display_name":"Shearing (physics)","level":2,"score":0.4953085482120514},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.47059762477874756},{"id":"https://openalex.org/C135981907","wikidata":"https://www.wikidata.org/wiki/Q188056","display_name":"Triangulation","level":2,"score":0.45780491828918457},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.45224225521087646},{"id":"https://openalex.org/C198082294","wikidata":"https://www.wikidata.org/wiki/Q3399648","display_name":"Position (finance)","level":2,"score":0.44373437762260437},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.4312899112701416},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.3518335223197937},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.22800201177597046},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.08047518134117126},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.07620000839233398},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0},{"id":"https://openalex.org/C187320778","wikidata":"https://www.wikidata.org/wiki/Q1349130","display_name":"Geotechnical engineering","level":1,"score":0.0},{"id":"https://openalex.org/C10138342","wikidata":"https://www.wikidata.org/wiki/Q43015","display_name":"Finance","level":1,"score":0.0},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/ivcnz.2015.7761512","is_oa":false,"landing_page_url":"https://doi.org/10.1109/ivcnz.2015.7761512","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2015 International Conference on Image and Vision Computing New Zealand (IVCNZ)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Life below water","score":0.7599999904632568,"id":"https://metadata.un.org/sdg/14"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":15,"referenced_works":["https://openalex.org/W104354346","https://openalex.org/W1505623432","https://openalex.org/W1627400044","https://openalex.org/W1983605552","https://openalex.org/W1983883141","https://openalex.org/W2057175746","https://openalex.org/W2068265540","https://openalex.org/W2076427377","https://openalex.org/W2085261163","https://openalex.org/W2109833904","https://openalex.org/W2119605622","https://openalex.org/W2124386111","https://openalex.org/W2133059825","https://openalex.org/W6636759986","https://openalex.org/W6884903256"],"related_works":["https://openalex.org/W2912782527","https://openalex.org/W2002904063","https://openalex.org/W2559085038","https://openalex.org/W2184781617","https://openalex.org/W2724122122","https://openalex.org/W2410884360","https://openalex.org/W2032794652","https://openalex.org/W2613823046","https://openalex.org/W4251240031","https://openalex.org/W2574175918"],"abstract_inverted_index":{"This":[0,49],"paper":[1],"proposes":[2],"a":[3,16,45,122],"novel":[4,130],"approach":[5,124],"to":[6,22,29,125,158],"comparing":[7],"cell":[8,34,42,69],"colony":[9,70],"images":[10,71],"taken":[11,75],"at":[12,76],"different":[13,77,82],"times":[14,78],"on":[15,36,102,115],"Petri":[17,38],"dish.":[18],"The":[19],"objective":[20],"is":[21,51,142],"provide":[23],"an":[24],"assistive":[25],"tool":[26],"for":[27,72],"microbiologists":[28],"quantify":[30],"the":[31,55,61,68,91,94,116,138,150,153,163],"loss":[32],"of":[33,47,60,86,93,146,152],"colonies":[35,43,63],"two":[37],"dishes,":[39],"by":[40],"mapping":[41],"between":[44],"pair":[46],"images.":[48],"problem":[50,117],"highly":[52],"non-trivial,":[53],"as":[54],"shape,":[56],"size":[57],"and":[58,79,88],"position":[59],"corresponding":[62],"vary":[64],"randomly.":[65],"In":[66],"addition,":[67],"comparison":[73,157],"are":[74],"from":[80],"slightly":[81],"perspectives":[83],"(i.e.":[84],"effects":[85],"shearing),":[87],"this":[89],"amplifies":[90],"complexity":[92],"problem.":[95],"Experiments":[96],"show":[97],"that":[98,133],"approaches":[99],"purely":[100],"based":[101],"SIFT":[103],"or":[104,106],"SURF,":[105],"algorithms":[107,136],"used":[108],"in":[109,156,162],"astronomy,":[110],"do":[111],"not":[112],"perform":[113],"well":[114],"domain.":[118],"We":[119],"therefore":[120],"introduce":[121],"new":[123,154],"addressing":[126],"these":[127],"problems.":[128],"A":[129],"iterative":[131],"technique":[132],"combines":[134],"triangulation":[135],"with":[137],"RANSAC":[139],"alignment":[140],"algorithm":[141,155],"proposed.":[143],"Through":[144],"hundreds":[145],"experiments,":[147],"we":[148],"demonstrate":[149],"efficacy":[151],"existing":[159],"ones":[160],"found":[161],"literature.":[164]},"counts_by_year":[],"updated_date":"2026-07-29T14:22:42.915294","created_date":"2025-10-10T00:00:00"}
