{"id":"https://openalex.org/W2122306708","doi":"https://doi.org/10.1109/iv.2002.1028774","title":"Visualizing metabolic networks in VRML","display_name":"Visualizing metabolic networks in VRML","publication_year":2003,"publication_date":"2003-06-25","ids":{"openalex":"https://openalex.org/W2122306708","doi":"https://doi.org/10.1109/iv.2002.1028774","mag":"2122306708"},"language":"en","primary_location":{"id":"doi:10.1109/iv.2002.1028774","is_oa":false,"landing_page_url":"https://doi.org/10.1109/iv.2002.1028774","pdf_url":null,"source":{"id":"https://openalex.org/S4306524423","display_name":"Proceedings Sixth International Conference on Information Visualisation","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"conference"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings Sixth International Conference on Information Visualisation","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5002644108","display_name":"I. V. Rojdestvenski","orcid":null},"institutions":[{"id":"https://openalex.org/I90267481","display_name":"Ume\u00e5 University","ror":"https://ror.org/05kb8h459","country_code":"SE","type":"education","lineage":["https://openalex.org/I90267481"]}],"countries":["SE"],"is_corresponding":true,"raw_author_name":"I. Rojdestvenski","raw_affiliation_strings":["Department of Plant Physiology, Ume\u00e5 University, Umea, Sweden","[Dept. of Plant Physiol., Umea Univ., Sweden]"],"affiliations":[{"raw_affiliation_string":"Department of Plant Physiology, Ume\u00e5 University, Umea, Sweden","institution_ids":["https://openalex.org/I90267481"]},{"raw_affiliation_string":"[Dept. of Plant Physiol., Umea Univ., Sweden]","institution_ids":["https://openalex.org/I90267481"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5069196874","display_name":"M. G. Cottam","orcid":"https://orcid.org/0000-0002-7775-0083"},"institutions":[{"id":"https://openalex.org/I90267481","display_name":"Ume\u00e5 University","ror":"https://ror.org/05kb8h459","country_code":"SE","type":"education","lineage":["https://openalex.org/I90267481"]},{"id":"https://openalex.org/I125749732","display_name":"Western University","ror":"https://ror.org/02grkyz14","country_code":"CA","type":"education","lineage":["https://openalex.org/I125749732"]}],"countries":["CA","SE"],"is_corresponding":false,"raw_author_name":"M. Cottam","raw_affiliation_strings":["Department of Physics and Astronomy, University of Western Ontario, London, ONT, Canada","[Dept. of Plant Physiol., Umea Univ., Sweden]"],"affiliations":[{"raw_affiliation_string":"Department of Physics and Astronomy, University of Western Ontario, London, ONT, Canada","institution_ids":["https://openalex.org/I125749732"]},{"raw_affiliation_string":"[Dept. of Plant Physiol., Umea Univ., Sweden]","institution_ids":["https://openalex.org/I90267481"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5002644108"],"corresponding_institution_ids":["https://openalex.org/I90267481"],"apc_list":null,"apc_paid":null,"fwci":1.5,"has_fulltext":false,"cited_by_count":7,"citation_normalized_percentile":{"value":0.83516484,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"1","issue":null,"first_page":"175","last_page":"180"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9909999966621399,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9909999966621399,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9851999878883362,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9843000173568726,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7870956659317017},{"id":"https://openalex.org/keywords/vrml","display_name":"VRML","score":0.775547981262207},{"id":"https://openalex.org/keywords/glyph","display_name":"Glyph (data visualization)","score":0.7065982818603516},{"id":"https://openalex.org/keywords/scripting-language","display_name":"Scripting language","score":0.6690578460693359},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.571742057800293},{"id":"https://openalex.org/keywords/human\u2013computer-interaction","display_name":"Human\u2013computer interaction","score":0.5143119096755981},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.4562141001224518},{"id":"https://openalex.org/keywords/avatar","display_name":"Avatar","score":0.4495092034339905},{"id":"https://openalex.org/keywords/data-visualization","display_name":"Data visualization","score":0.4453837275505066},{"id":"https://openalex.org/keywords/the-internet","display_name":"The Internet","score":0.4134223461151123},{"id":"https://openalex.org/keywords/virtual-reality","display_name":"Virtual reality","score":0.3482385277748108},{"id":"https://openalex.org/keywords/multimedia","display_name":"Multimedia","score":0.3213033676147461},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.3115941882133484},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.18213453888893127},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.1618538498878479}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7870956659317017},{"id":"https://openalex.org/C75625381","wikidata":"https://www.wikidata.org/wiki/Q176061","display_name":"VRML","level":3,"score":0.775547981262207},{"id":"https://openalex.org/C142816647","wikidata":"https://www.wikidata.org/wiki/Q5573018","display_name":"Glyph (data visualization)","level":3,"score":0.7065982818603516},{"id":"https://openalex.org/C61423126","wikidata":"https://www.wikidata.org/wiki/Q187432","display_name":"Scripting language","level":2,"score":0.6690578460693359},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.571742057800293},{"id":"https://openalex.org/C107457646","wikidata":"https://www.wikidata.org/wiki/Q207434","display_name":"Human\u2013computer interaction","level":1,"score":0.5143119096755981},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.4562141001224518},{"id":"https://openalex.org/C2777365542","wikidata":"https://www.wikidata.org/wiki/Q83090","display_name":"Avatar","level":2,"score":0.4495092034339905},{"id":"https://openalex.org/C172367668","wikidata":"https://www.wikidata.org/wiki/Q6504956","display_name":"Data visualization","level":3,"score":0.4453837275505066},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.4134223461151123},{"id":"https://openalex.org/C194969405","wikidata":"https://www.wikidata.org/wiki/Q170519","display_name":"Virtual reality","level":2,"score":0.3482385277748108},{"id":"https://openalex.org/C49774154","wikidata":"https://www.wikidata.org/wiki/Q131765","display_name":"Multimedia","level":1,"score":0.3213033676147461},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.3115941882133484},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.18213453888893127},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.1618538498878479}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/iv.2002.1028774","is_oa":false,"landing_page_url":"https://doi.org/10.1109/iv.2002.1028774","pdf_url":null,"source":{"id":"https://openalex.org/S4306524423","display_name":"Proceedings Sixth International Conference on Information Visualisation","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"conference"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings Sixth International Conference on Information Visualisation","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":18,"referenced_works":["https://openalex.org/W974149129","https://openalex.org/W1565300882","https://openalex.org/W1758628264","https://openalex.org/W1867324358","https://openalex.org/W1964287788","https://openalex.org/W1992709202","https://openalex.org/W2010340103","https://openalex.org/W2036215574","https://openalex.org/W2061417134","https://openalex.org/W2124236793","https://openalex.org/W2130402962","https://openalex.org/W2137439611","https://openalex.org/W2161358754","https://openalex.org/W2181332304","https://openalex.org/W2562957843","https://openalex.org/W6685595561","https://openalex.org/W6894338632","https://openalex.org/W7024902556"],"related_works":["https://openalex.org/W1501435322","https://openalex.org/W2130447309","https://openalex.org/W2085557252","https://openalex.org/W1993788990","https://openalex.org/W2182671947","https://openalex.org/W1893118838","https://openalex.org/W2290503983","https://openalex.org/W2019433909","https://openalex.org/W1966969226","https://openalex.org/W2152762220"],"abstract_inverted_index":{"A":[0],"successful":[1],"data":[2,12],"collection":[3],"visualization":[4,61],"should":[5],"satisfy":[6],"conflicting":[7],"requirements:":[8],"unification":[9],"of":[10,19,32,56,80,86,102,130,143],"diverse":[11],"formats,":[13],"support":[14,18],"for":[15,59],"serendipity":[16],"research,":[17],"hierarchical":[20],"structures,":[21],"algorithmizability,":[22],"vast":[23],"information":[24,38],"density,":[25],"Internet-readiness,":[26],"etc.":[27],"The":[28,114,128,141],"traditional":[29],"2D":[30],"representations":[31],"metabolic":[33,87,104,118],"pathways":[34],"lack":[35],"compactness":[36],"and":[37,52,68,73,126],"density.":[39],"Virtual":[40],"reality":[41],"(VR)":[42],"has":[43],"made":[44],"significant":[45],"progress":[46],"in":[47,116],"engineering,":[48],"architectural":[49],"design,":[50],"entertainment":[51],"communication.":[53],"Evident":[54],"advantages":[55],"using":[57,81,136],"VR":[58],"scientific":[60],"are":[62,120,134],"subconscious":[63],"orientation,":[64],"compromise":[65],"between":[66],"overview":[67],"detail,":[69],"memorizing":[70],"search":[71],"results,":[72],"customization.":[74],"We":[75,89],"experiment":[76],"with":[77],"the":[78,91,117,131,144],"possibility":[79],"immersive":[82],"abstract":[83],"3D":[84],"visualizations":[85],"networks.":[88],"present":[90],"trial":[92],"Metabolic":[93],"Network":[94],"Visualizer":[95],"(MNV)":[96],"software,":[97],"which":[98],"produces":[99],"graphical":[100],"representation":[101],"a":[103,107,137],"network":[105,119],"as":[106,122],"VRML":[108],"(Virtual":[109],"Reality":[110],"Modeling":[111],"Language)":[112],"world.":[113],"entities":[115],"identified":[121],"\"compartment\",":[123],"\"species\",":[124],"\"reaction\"":[125],"\"transporter\".":[127],"properties":[129],"above":[132],"objects":[133],"described":[135],"simple":[138],"scripting":[139],"language.":[140],"demonstration":[142],"MNV":[145],"software":[146],"is":[147],"available":[148],"at":[149],"http://130.239.139.41/sciencevr/mnv/indexview.html.":[150]},"counts_by_year":[{"year":2021,"cited_by_count":1},{"year":2017,"cited_by_count":2},{"year":2013,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
