{"id":"https://openalex.org/W4416513785","doi":"https://doi.org/10.1109/itw62417.2025.11240521","title":"Correcting Errors in Composite DNA: Channel Model and Code Design","display_name":"Correcting Errors in Composite DNA: Channel Model and Code Design","publication_year":2025,"publication_date":"2025-09-29","ids":{"openalex":"https://openalex.org/W4416513785","doi":"https://doi.org/10.1109/itw62417.2025.11240521"},"language":null,"primary_location":{"id":"doi:10.1109/itw62417.2025.11240521","is_oa":false,"landing_page_url":"https://doi.org/10.1109/itw62417.2025.11240521","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2025 IEEE Information Theory Workshop (ITW)","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100337669","display_name":"Chen Wang","orcid":"https://orcid.org/0000-0003-2638-3081"},"institutions":[{"id":"https://openalex.org/I80143920","display_name":"Shandong University of Science and Technology","ror":"https://ror.org/04gtjhw98","country_code":"CN","type":"education","lineage":["https://openalex.org/I80143920"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Chen Wang","raw_affiliation_strings":["Shandong University,School of Cyber Science and Technology,Qingdao,China,266237"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Shandong University,School of Cyber Science and Technology,Qingdao,China,266237","institution_ids":["https://openalex.org/I80143920"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001757558","display_name":"Tuan T. Nguyen","orcid":"https://orcid.org/0000-0002-0737-430X"},"institutions":[{"id":"https://openalex.org/I152815399","display_name":"Singapore University of Technology and Design","ror":"https://ror.org/05j6fvn87","country_code":"SG","type":"education","lineage":["https://openalex.org/I152815399"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Tuan Thanh Nguyen","raw_affiliation_strings":["Singapore University of Technology and Design,Science, Mathematics and Technology Cluster,Singapore,487372"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Singapore University of Technology and Design,Science, Mathematics and Technology Cluster,Singapore,487372","institution_ids":["https://openalex.org/I152815399"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Kui Cai","orcid":null},"institutions":[{"id":"https://openalex.org/I152815399","display_name":"Singapore University of Technology and Design","ror":"https://ror.org/05j6fvn87","country_code":"SG","type":"education","lineage":["https://openalex.org/I152815399"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Kui Cai","raw_affiliation_strings":["Singapore University of Technology and Design,Science, Mathematics and Technology Cluster,Singapore,487372"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Singapore University of Technology and Design,Science, Mathematics and Technology Cluster,Singapore,487372","institution_ids":["https://openalex.org/I152815399"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5101947056","display_name":"Yiwei Zhang","orcid":"https://orcid.org/0000-0003-4105-9175"},"institutions":[{"id":"https://openalex.org/I80143920","display_name":"Shandong University of Science and Technology","ror":"https://ror.org/04gtjhw98","country_code":"CN","type":"education","lineage":["https://openalex.org/I80143920"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yiwei Zhang","raw_affiliation_strings":["Shandong University,School of Cyber Science and Technology,Qingdao,China,266237"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Shandong University,School of Cyber Science and Technology,Qingdao,China,266237","institution_ids":["https://openalex.org/I80143920"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"1","last_page":"6"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12029","display_name":"DNA and Biological Computing","score":0.9890999794006348,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12029","display_name":"DNA and Biological Computing","score":0.9890999794006348,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.0017999999690800905,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10432","display_name":"DNA and Nucleic Acid Chemistry","score":0.0010999999940395355,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/codebook","display_name":"Codebook","score":0.5406000018119812},{"id":"https://openalex.org/keywords/composite-number","display_name":"Composite number","score":0.5285999774932861},{"id":"https://openalex.org/keywords/code-word","display_name":"Code word","score":0.5195000171661377},{"id":"https://openalex.org/keywords/code","display_name":"Code (set theory)","score":0.45899999141693115},{"id":"https://openalex.org/keywords/encoding","display_name":"Encoding (memory)","score":0.4404999911785126},{"id":"https://openalex.org/keywords/symbol","display_name":"Symbol (formal)","score":0.421099990606308},{"id":"https://openalex.org/keywords/alphabet","display_name":"Alphabet","score":0.42080000042915344},{"id":"https://openalex.org/keywords/error-detection-and-correction","display_name":"Error detection and correction","score":0.38499999046325684}],"concepts":[{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.5733000040054321},{"id":"https://openalex.org/C127759330","wikidata":"https://www.wikidata.org/wiki/Q637416","display_name":"Codebook","level":2,"score":0.5406000018119812},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5389000177383423},{"id":"https://openalex.org/C104779481","wikidata":"https://www.wikidata.org/wiki/Q50707","display_name":"Composite number","level":2,"score":0.5285999774932861},{"id":"https://openalex.org/C153207627","wikidata":"https://www.wikidata.org/wiki/Q863873","display_name":"Code word","level":3,"score":0.5195000171661377},{"id":"https://openalex.org/C2776760102","wikidata":"https://www.wikidata.org/wiki/Q5139990","display_name":"Code (set theory)","level":3,"score":0.45899999141693115},{"id":"https://openalex.org/C125411270","wikidata":"https://www.wikidata.org/wiki/Q18653","display_name":"Encoding (memory)","level":2,"score":0.4404999911785126},{"id":"https://openalex.org/C134400042","wikidata":"https://www.wikidata.org/wiki/Q2372244","display_name":"Symbol (formal)","level":2,"score":0.421099990606308},{"id":"https://openalex.org/C112876837","wikidata":"https://www.wikidata.org/wiki/Q837518","display_name":"Alphabet","level":2,"score":0.42080000042915344},{"id":"https://openalex.org/C103088060","wikidata":"https://www.wikidata.org/wiki/Q1062839","display_name":"Error detection and correction","level":2,"score":0.38499999046325684},{"id":"https://openalex.org/C127162648","wikidata":"https://www.wikidata.org/wiki/Q16858953","display_name":"Channel (broadcasting)","level":2,"score":0.3578000068664551},{"id":"https://openalex.org/C94375191","wikidata":"https://www.wikidata.org/wiki/Q11205","display_name":"Arithmetic","level":1,"score":0.3450999855995178},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.3443000018596649},{"id":"https://openalex.org/C42058472","wikidata":"https://www.wikidata.org/wiki/Q810214","display_name":"Base (topology)","level":2,"score":0.34139999747276306},{"id":"https://openalex.org/C151201525","wikidata":"https://www.wikidata.org/wiki/Q177239","display_name":"Limit (mathematics)","level":2,"score":0.33079999685287476},{"id":"https://openalex.org/C185581394","wikidata":"https://www.wikidata.org/wiki/Q145911","display_name":"Base pair","level":3,"score":0.32899999618530273},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.31679999828338623},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.31209999322891235},{"id":"https://openalex.org/C118615104","wikidata":"https://www.wikidata.org/wiki/Q121416","display_name":"Discrete mathematics","level":1,"score":0.2985999882221222},{"id":"https://openalex.org/C192209626","wikidata":"https://www.wikidata.org/wiki/Q190909","display_name":"Focus (optics)","level":2,"score":0.29499998688697815},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.29260000586509705},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.2867000102996826},{"id":"https://openalex.org/C78548338","wikidata":"https://www.wikidata.org/wiki/Q2493","display_name":"Data compression","level":2,"score":0.28139999508857727}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/itw62417.2025.11240521","is_oa":false,"landing_page_url":"https://doi.org/10.1109/itw62417.2025.11240521","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2025 IEEE Information Theory Workshop (ITW)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320337504","display_name":"Research and Development","ror":"https://ror.org/027s68j25"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":16,"referenced_works":["https://openalex.org/W2025383314","https://openalex.org/W2074920973","https://openalex.org/W2124595411","https://openalex.org/W2162980030","https://openalex.org/W2592122940","https://openalex.org/W2962809499","https://openalex.org/W2963561675","https://openalex.org/W2972936807","https://openalex.org/W3081031547","https://openalex.org/W4391974632","https://openalex.org/W4393497334","https://openalex.org/W4399207509","https://openalex.org/W4401692181","https://openalex.org/W4401692355","https://openalex.org/W4401693833","https://openalex.org/W4415368861"],"related_works":[],"abstract_inverted_index":{"Composite":[0],"DNA":[1,32,80,90,121,139],"is":[2,160,208],"a":[3,30,35,42,123,127,211],"novel":[4],"approach":[5],"that":[6,167,214,240],"enables":[7],"DNA-based":[8],"data":[9,72,128],"storage":[10,129],"to":[11,56,64,107,209],"exceed":[12],"the":[13,38,51,65,93,99,110,146,149,153],"theoretical":[14],"limit":[15],"of":[16,37,101,183,200],"2":[17],"bits":[18],"per":[19,74],"symbol.":[20],"In":[21,221],"this":[22,69,113,222],"approach,":[23],"every":[24,215],"composite":[25,111,120,138,144],"symbol":[26],"does":[27],"not":[28],"store":[29],"single":[31,227],"nucleotide":[33],"but":[34],"mixture":[36,100,159],"four":[39,61],"nucleotides":[40],"in":[41,109,122,156],"predetermined":[43],"ratio.":[44],"By":[45],"using":[46],"different":[47],"mixtures":[48],"and":[49,77,103,141,152,181,195,204,234],"ratios,":[50],"alphabet":[52],"can":[53,96,217],"be":[54,218],"extended":[55],"have":[57,172],"far":[58],"more":[59],"than":[60],"symbols":[62],"compared":[63],"naive":[66],"approach.":[67],"Although":[68],"method":[70],"increases":[71],"density":[73],"synthesis":[75,81],"cycle":[76],"potentially":[78],"reduces":[79],"costs,":[82],"it":[83],"also":[84],"introduces":[85],"significant":[86],"challenges":[87],"for":[88,119,136,142,174,235],"accurate":[89],"sequencing":[91],"since":[92],"base-level":[94],"errors":[95,191],"easily":[97],"change":[98],"bases":[102],"their":[104],"ratio,":[105],"leading":[106],"changes":[108],"symbols.With":[112],"motivation,":[114],"we":[115,224,238],"investigated":[116],"error-correcting":[117],"codes":[118,243],"general":[124],"setting.":[125],"Consider":[126],"scenario":[130],"where":[131],"m":[132],"reads":[133],"are":[134,244],"provided":[135],"each":[137,143,182],"sequence,":[140],"symbol,":[145],"difference":[147],"between":[148],"observation":[150],"ratio":[151,155],"original":[154],"its":[157],"base":[158],"at":[161,168,187],"most":[162,169,188],"\u03f5.":[163],"We":[164],"further":[165],"assume":[166],"\u03b4m":[170],"sequences":[171],"errors,":[173],"some":[175],"0":[176],"\u2264":[177,179],"\u03b4":[178,203],"1,":[180,233],"them":[184],"suffers":[185],"from":[186],"t":[189,231],"edit":[190,228],"(i.e.,":[192],"substitutions,":[193],"insertions,":[194],"deletions).":[196],"Given":[197],"arbitrary":[198],"values":[199],"m,":[201],"\u03f5,":[202],"t,":[205],"our":[206,241],"task":[207],"design":[210],"codebook":[212],"such":[213],"codeword":[216],"uniquely":[219],"reconstructed.":[220],"work,":[223],"focus":[225],"on":[226],"error,":[229],"i.e.,":[230],"=":[232],"several":[236],"cases,":[237],"show":[239],"proposed":[242],"asymptotically":[245],"optimal.":[246]},"counts_by_year":[],"updated_date":"2026-07-14T23:27:15.235271","created_date":"2025-11-23T00:00:00"}