{"id":"https://openalex.org/W4416513848","doi":"https://doi.org/10.1109/itw62417.2025.11240437","title":"A Converse For the Capacity of the Shotgun Sequencing Channel with Erasures","display_name":"A Converse For the Capacity of the Shotgun Sequencing Channel with Erasures","publication_year":2025,"publication_date":"2025-09-29","ids":{"openalex":"https://openalex.org/W4416513848","doi":"https://doi.org/10.1109/itw62417.2025.11240437"},"language":null,"primary_location":{"id":"doi:10.1109/itw62417.2025.11240437","is_oa":false,"landing_page_url":"https://doi.org/10.1109/itw62417.2025.11240437","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2025 IEEE Information Theory Workshop (ITW)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5078913490","display_name":"Mohammed Y. Ali","orcid":"https://orcid.org/0000-0001-7502-3897"},"institutions":[{"id":"https://openalex.org/I64189192","display_name":"International Institute of Information Technology, Hyderabad","ror":"https://ror.org/05f11g639","country_code":"IN","type":"education","lineage":["https://openalex.org/I64189192"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Mohammed Ihsan Ali","raw_affiliation_strings":["International Institute of Information Technology,Signal Processing and Communications Research Center,Hyderabad,India,500032"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"International Institute of Information Technology,Signal Processing and Communications Research Center,Hyderabad,India,500032","institution_ids":["https://openalex.org/I64189192"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042249569","display_name":"Hrishi Narayanan","orcid":"https://orcid.org/0000-0002-4627-8644"},"institutions":[{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Hrishi Narayanan","raw_affiliation_strings":["Technical University of Munich,Institute for Communications Engineering,Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Technical University of Munich,Institute for Communications Engineering,Germany","institution_ids":["https://openalex.org/I62916508"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5001685956","display_name":"Prasad Krishnan","orcid":"https://orcid.org/0000-0001-9182-6278"},"institutions":[{"id":"https://openalex.org/I64189192","display_name":"International Institute of Information Technology, Hyderabad","ror":"https://ror.org/05f11g639","country_code":"IN","type":"education","lineage":["https://openalex.org/I64189192"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Prasad Krishnan","raw_affiliation_strings":["International Institute of Information Technology,Signal Processing and Communications Research Center,Hyderabad,India,500032"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"International Institute of Information Technology,Signal Processing and Communications Research Center,Hyderabad,India,500032","institution_ids":["https://openalex.org/I64189192"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.576,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.72759447,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":95},"biblio":{"volume":null,"issue":null,"first_page":"1","last_page":"6"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12029","display_name":"DNA and Biological Computing","score":0.9409999847412109,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12029","display_name":"DNA and Biological Computing","score":0.9409999847412109,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.00860000029206276,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10207","display_name":"Advanced biosensing and bioanalysis techniques","score":0.007000000216066837,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/converse","display_name":"Converse","score":0.8971999883651733},{"id":"https://openalex.org/keywords/shotgun-sequencing","display_name":"Shotgun sequencing","score":0.7865999937057495},{"id":"https://openalex.org/keywords/channel","display_name":"Channel (broadcasting)","score":0.6288999915122986},{"id":"https://openalex.org/keywords/shotgun","display_name":"Shotgun","score":0.6266000270843506},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.5339999794960022},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.5072000026702881},{"id":"https://openalex.org/keywords/hybrid-genome-assembly","display_name":"Hybrid genome assembly","score":0.5027999877929688},{"id":"https://openalex.org/keywords/dna-sequencing","display_name":"DNA sequencing","score":0.3871999979019165}],"concepts":[{"id":"https://openalex.org/C2776809875","wikidata":"https://www.wikidata.org/wiki/Q1375963","display_name":"Converse","level":2,"score":0.8971999883651733},{"id":"https://openalex.org/C101985253","wikidata":"https://www.wikidata.org/wiki/Q1073526","display_name":"Shotgun sequencing","level":4,"score":0.7865999937057495},{"id":"https://openalex.org/C127162648","wikidata":"https://www.wikidata.org/wiki/Q16858953","display_name":"Channel (broadcasting)","level":2,"score":0.6288999915122986},{"id":"https://openalex.org/C2781434637","wikidata":"https://www.wikidata.org/wiki/Q486396","display_name":"Shotgun","level":3,"score":0.6266000270843506},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.5339999794960022},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.5105000138282776},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.5072000026702881},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5055000185966492},{"id":"https://openalex.org/C113425843","wikidata":"https://www.wikidata.org/wiki/Q5953213","display_name":"Hybrid genome assembly","level":5,"score":0.5027999877929688},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.3871999979019165},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.37950000166893005},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.373199999332428},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.35499998927116394},{"id":"https://openalex.org/C132917006","wikidata":"https://www.wikidata.org/wiki/Q5250436","display_name":"Deep sequencing","level":4,"score":0.30239999294281006},{"id":"https://openalex.org/C97744766","wikidata":"https://www.wikidata.org/wiki/Q870845","display_name":"Channel capacity","level":3,"score":0.2816999852657318},{"id":"https://openalex.org/C2779530757","wikidata":"https://www.wikidata.org/wiki/Q1207505","display_name":"Quality (philosophy)","level":2,"score":0.2809999883174896},{"id":"https://openalex.org/C2776235265","wikidata":"https://www.wikidata.org/wiki/Q18392052","display_name":"Fragment (logic)","level":2,"score":0.2759000062942505},{"id":"https://openalex.org/C101722063","wikidata":"https://www.wikidata.org/wiki/Q218825","display_name":"Random access","level":2,"score":0.2750000059604645},{"id":"https://openalex.org/C2279292","wikidata":"https://www.wikidata.org/wiki/Q6322851","display_name":"k-mer","level":4,"score":0.2745000123977661},{"id":"https://openalex.org/C18762648","wikidata":"https://www.wikidata.org/wiki/Q42213","display_name":"Work (physics)","level":2,"score":0.2694000005722046},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.2667999863624573},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.25999999046325684},{"id":"https://openalex.org/C32795469","wikidata":"https://www.wikidata.org/wiki/Q5156430","display_name":"Complementary sequences","level":2,"score":0.25}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/itw62417.2025.11240437","is_oa":false,"landing_page_url":"https://doi.org/10.1109/itw62417.2025.11240437","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2025 IEEE Information Theory Workshop (ITW)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":18,"referenced_works":["https://openalex.org/W2088310213","https://openalex.org/W2165847428","https://openalex.org/W2515489235","https://openalex.org/W2615068531","https://openalex.org/W2791982652","https://openalex.org/W2897609915","https://openalex.org/W2903184175","https://openalex.org/W2962809499","https://openalex.org/W3131711615","https://openalex.org/W3172394053","https://openalex.org/W3175471354","https://openalex.org/W3197362936","https://openalex.org/W3197474136","https://openalex.org/W3207200940","https://openalex.org/W4213270802","https://openalex.org/W4398200026","https://openalex.org/W4401693450","https://openalex.org/W4416513848"],"related_works":[],"abstract_inverted_index":{"The":[0,23,110,131],"shotgun":[1,52,74],"sequencing":[2,37,53,75],"process":[3,38],"involves":[4],"fragmenting":[5],"a":[6,43,69,105,116,120],"long":[7],"DNA":[8,44],"sequence":[9],"(input":[10],"string)":[11],"into":[12],"numerous":[13],"shorter,":[14],"unordered,":[15],"and":[16,27],"overlapping":[17],"segments":[18],"(referred":[19],"to":[20,30,88],"as":[21,39],"reads).":[22],"reads":[24,85],"are":[25,86],"sequenced,":[26],"later":[28],"aligned":[29],"reconstruct":[31],"the":[32,36,40,47,61,73,81,84,100,113,125,129,141],"original":[33],"string.":[34],"Viewing":[35],"read-phase":[41],"of":[42,50,119,128],"storage":[45],"system,":[46],"information-theoretic":[48],"capacity":[49],"noise-free":[51],"has":[54],"been":[55],"characterized":[56],"in":[57,66,79,83,136,145],"literature.":[58],"Motivated":[59],"by":[60],"base-wise":[62],"quality":[63],"scores":[64],"available":[65],"practical":[67],"sequencers,":[68],"recent":[70],"work":[71],"considered":[72],"channel":[76,96,147],"with":[77],"erasures,":[78],"which":[80,123],"symbols":[82],"assumed":[87],"contain":[89],"random":[90],"erasures.":[91],"Achievable":[92],"rates":[93],"for":[94,107,112],"this":[95,108],"were":[97],"identified.":[98],"In":[99],"present":[101],"work,":[102],"we":[103],"obtain":[104],"converse":[106,132],"channel.":[109],"arguments":[111],"proof":[114],"involve":[115],"careful":[117],"analysis":[118],"genie-aided":[121],"decoder,":[122],"knows":[124],"correct":[126],"locations":[127],"reads.":[130],"is":[133],"not":[134],"tight":[135],"general.":[137],"However,":[138],"it":[139],"meets":[140],"achievability":[142],"result":[143],"asymptotically":[144],"some":[146],"parameters.":[148]},"counts_by_year":[{"year":2025,"cited_by_count":1}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-11-23T00:00:00"}
