{"id":"https://openalex.org/W2137447447","doi":"https://doi.org/10.1109/itcc.2004.1286589","title":"A Web/grid portal implementation of BioSimGrid: a biomolecular simulation database","display_name":"A Web/grid portal implementation of BioSimGrid: a biomolecular simulation database","publication_year":2004,"publication_date":"2004-01-01","ids":{"openalex":"https://openalex.org/W2137447447","doi":"https://doi.org/10.1109/itcc.2004.1286589","mag":"2137447447"},"language":"en","primary_location":{"id":"doi:10.1109/itcc.2004.1286589","is_oa":false,"landing_page_url":"https://doi.org/10.1109/itcc.2004.1286589","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"International Conference on Information Technology: Coding and Computing, 2004. Proceedings. ITCC 2004.","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100761159","display_name":"Bing Wu","orcid":"https://orcid.org/0000-0002-1190-4932"},"institutions":[{"id":"https://openalex.org/I40120149","display_name":"University of Oxford","ror":"https://ror.org/052gg0110","country_code":"GB","type":"education","lineage":["https://openalex.org/I40120149"]},{"id":"https://openalex.org/I4210146410","display_name":"Science Oxford","ror":"https://ror.org/04j8yhy50","country_code":"GB","type":"nonprofit","lineage":["https://openalex.org/I4210146410"]},{"id":"https://openalex.org/I43439940","display_name":"University of Southampton","ror":"https://ror.org/01ryk1543","country_code":"GB","type":"education","lineage":["https://openalex.org/I43439940"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"B. Wu","raw_affiliation_strings":["Department of Biochemistry, University of Southampton, UK","E-Science Centre, University of Oxford, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biochemistry, University of Southampton, UK","institution_ids":["https://openalex.org/I43439940"]},{"raw_affiliation_string":"E-Science Centre, University of Oxford, UK","institution_ids":["https://openalex.org/I40120149","https://openalex.org/I4210146410"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068695573","display_name":"Matthew Dovey","orcid":null},"institutions":[{"id":"https://openalex.org/I40120149","display_name":"University of Oxford","ror":"https://ror.org/052gg0110","country_code":"GB","type":"education","lineage":["https://openalex.org/I40120149"]},{"id":"https://openalex.org/I4210146410","display_name":"Science Oxford","ror":"https://ror.org/04j8yhy50","country_code":"GB","type":"nonprofit","lineage":["https://openalex.org/I4210146410"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"M. Dovey","raw_affiliation_strings":["E-Science Centre, University of Oxford, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"E-Science Centre, University of Oxford, UK","institution_ids":["https://openalex.org/I40120149","https://openalex.org/I4210146410"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059992868","display_name":"Muan Hong Ng","orcid":null},"institutions":[{"id":"https://openalex.org/I43439940","display_name":"University of Southampton","ror":"https://ror.org/01ryk1543","country_code":"GB","type":"education","lineage":["https://openalex.org/I43439940"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"M.H. Ng","raw_affiliation_strings":["E-Science Centre, University of Southampton, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"E-Science Centre, University of Southampton, UK","institution_ids":["https://openalex.org/I43439940"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058674757","display_name":"Kaihsu Tai","orcid":"https://orcid.org/0000-0002-4979-7060"},"institutions":[{"id":"https://openalex.org/I43439940","display_name":"University of Southampton","ror":"https://ror.org/01ryk1543","country_code":"GB","type":"education","lineage":["https://openalex.org/I43439940"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"K. Tai","raw_affiliation_strings":["Department of Biochemistry, University of Southampton, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biochemistry, University of Southampton, UK","institution_ids":["https://openalex.org/I43439940"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5084323831","display_name":"Stuart E. Murdock","orcid":null},"institutions":[{"id":"https://openalex.org/I43439940","display_name":"University of Southampton","ror":"https://ror.org/01ryk1543","country_code":"GB","type":"education","lineage":["https://openalex.org/I43439940"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"S. Murdock","raw_affiliation_strings":["E-Science Centre, University of Southampton, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"E-Science Centre, University of Southampton, UK","institution_ids":["https://openalex.org/I43439940"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082506498","display_name":"Paul Jeffreys","orcid":null},"institutions":[{"id":"https://openalex.org/I40120149","display_name":"University of Oxford","ror":"https://ror.org/052gg0110","country_code":"GB","type":"education","lineage":["https://openalex.org/I40120149"]},{"id":"https://openalex.org/I4210146410","display_name":"Science Oxford","ror":"https://ror.org/04j8yhy50","country_code":"GB","type":"nonprofit","lineage":["https://openalex.org/I4210146410"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"P. Jeffreys","raw_affiliation_strings":["E-Science Centre, University of Oxford, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"E-Science Centre, University of Oxford, UK","institution_ids":["https://openalex.org/I40120149","https://openalex.org/I4210146410"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5069202553","display_name":"Sim\u00f3n Cox","orcid":"https://orcid.org/0000-0002-3884-3420"},"institutions":[{"id":"https://openalex.org/I43439940","display_name":"University of Southampton","ror":"https://ror.org/01ryk1543","country_code":"GB","type":"education","lineage":["https://openalex.org/I43439940"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"S. Cox","raw_affiliation_strings":["E-Science Centre, University of Southampton, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"E-Science Centre, University of Southampton, UK","institution_ids":["https://openalex.org/I43439940"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067820273","display_name":"Jonathan W. Essex","orcid":"https://orcid.org/0000-0003-2639-2746"},"institutions":[{"id":"https://openalex.org/I43439940","display_name":"University of Southampton","ror":"https://ror.org/01ryk1543","country_code":"GB","type":"education","lineage":["https://openalex.org/I43439940"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"J. Essex","raw_affiliation_strings":["Department of Chemistry, University of Southampton, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Chemistry, University of Southampton, UK","institution_ids":["https://openalex.org/I43439940"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5041718990","display_name":"Mark S.P. Sansom","orcid":"https://orcid.org/0000-0001-6360-7959"},"institutions":[{"id":"https://openalex.org/I43439940","display_name":"University of Southampton","ror":"https://ror.org/01ryk1543","country_code":"GB","type":"education","lineage":["https://openalex.org/I43439940"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"M.S.P. Sansom","raw_affiliation_strings":["Department of Biochemistry, University of Southampton, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biochemistry, University of Southampton, UK","institution_ids":["https://openalex.org/I43439940"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.6433,"has_fulltext":false,"cited_by_count":18,"citation_normalized_percentile":{"value":0.69825164,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"550","issue":null,"first_page":"50","last_page":"54 Vol.2"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10715","display_name":"Distributed and Parallel Computing Systems","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10715","display_name":"Distributed and Parallel Computing Systems","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9922000169754028,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9380000233650208,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7652226090431213},{"id":"https://openalex.org/keywords/grid","display_name":"Grid","score":0.6516488790512085},{"id":"https://openalex.org/keywords/grid-computing","display_name":"Grid computing","score":0.6407221555709839},{"id":"https://openalex.org/keywords/middleware","display_name":"Middleware (distributed applications)","score":0.6208813786506653},{"id":"https://openalex.org/keywords/public-key-infrastructure","display_name":"Public key infrastructure","score":0.6020113229751587},{"id":"https://openalex.org/keywords/web-service","display_name":"Web service","score":0.6018840074539185},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.5482974648475647},{"id":"https://openalex.org/keywords/service-oriented-architecture","display_name":"Service-oriented architecture","score":0.5239629745483398},{"id":"https://openalex.org/keywords/semantic-grid","display_name":"Semantic grid","score":0.4891407787799835},{"id":"https://openalex.org/keywords/architecture","display_name":"Architecture","score":0.46748870611190796},{"id":"https://openalex.org/keywords/single-sign-on","display_name":"Single sign-on","score":0.4583311676979065},{"id":"https://openalex.org/keywords/flexibility","display_name":"Flexibility (engineering)","score":0.44044387340545654},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.36761873960494995},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.34926438331604004},{"id":"https://openalex.org/keywords/authentication","display_name":"Authentication (law)","score":0.2549273371696472},{"id":"https://openalex.org/keywords/computer-security","display_name":"Computer security","score":0.17176488041877747},{"id":"https://openalex.org/keywords/public-key-cryptography","display_name":"Public-key cryptography","score":0.17000100016593933},{"id":"https://openalex.org/keywords/semantic-web","display_name":"Semantic Web","score":0.14323905110359192}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7652226090431213},{"id":"https://openalex.org/C187691185","wikidata":"https://www.wikidata.org/wiki/Q2020720","display_name":"Grid","level":2,"score":0.6516488790512085},{"id":"https://openalex.org/C70429105","wikidata":"https://www.wikidata.org/wiki/Q249999","display_name":"Grid computing","level":3,"score":0.6407221555709839},{"id":"https://openalex.org/C169468491","wikidata":"https://www.wikidata.org/wiki/Q146923","display_name":"Middleware (distributed applications)","level":2,"score":0.6208813786506653},{"id":"https://openalex.org/C72648740","wikidata":"https://www.wikidata.org/wiki/Q658476","display_name":"Public key infrastructure","level":4,"score":0.6020113229751587},{"id":"https://openalex.org/C35578498","wikidata":"https://www.wikidata.org/wiki/Q193424","display_name":"Web service","level":2,"score":0.6018840074539185},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.5482974648475647},{"id":"https://openalex.org/C57041688","wikidata":"https://www.wikidata.org/wiki/Q220644","display_name":"Service-oriented architecture","level":3,"score":0.5239629745483398},{"id":"https://openalex.org/C103692084","wikidata":"https://www.wikidata.org/wiki/Q1765824","display_name":"Semantic grid","level":3,"score":0.4891407787799835},{"id":"https://openalex.org/C123657996","wikidata":"https://www.wikidata.org/wiki/Q12271","display_name":"Architecture","level":2,"score":0.46748870611190796},{"id":"https://openalex.org/C2776362682","wikidata":"https://www.wikidata.org/wiki/Q568494","display_name":"Single sign-on","level":3,"score":0.4583311676979065},{"id":"https://openalex.org/C2780598303","wikidata":"https://www.wikidata.org/wiki/Q65921492","display_name":"Flexibility (engineering)","level":2,"score":0.44044387340545654},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.36761873960494995},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.34926438331604004},{"id":"https://openalex.org/C148417208","wikidata":"https://www.wikidata.org/wiki/Q4825882","display_name":"Authentication (law)","level":2,"score":0.2549273371696472},{"id":"https://openalex.org/C38652104","wikidata":"https://www.wikidata.org/wiki/Q3510521","display_name":"Computer security","level":1,"score":0.17176488041877747},{"id":"https://openalex.org/C203062551","wikidata":"https://www.wikidata.org/wiki/Q201339","display_name":"Public-key cryptography","level":3,"score":0.17000100016593933},{"id":"https://openalex.org/C2129575","wikidata":"https://www.wikidata.org/wiki/Q54837","display_name":"Semantic Web","level":2,"score":0.14323905110359192},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0},{"id":"https://openalex.org/C142362112","wikidata":"https://www.wikidata.org/wiki/Q735","display_name":"Art","level":0,"score":0.0},{"id":"https://openalex.org/C153349607","wikidata":"https://www.wikidata.org/wiki/Q36649","display_name":"Visual arts","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C148730421","wikidata":"https://www.wikidata.org/wiki/Q141090","display_name":"Encryption","level":2,"score":0.0},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1109/itcc.2004.1286589","is_oa":false,"landing_page_url":"https://doi.org/10.1109/itcc.2004.1286589","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"International Conference on Information Technology: Coding and Computing, 2004. Proceedings. ITCC 2004.","raw_type":"proceedings-article"},{"id":"pmh:uuid:5bcb2526-d3d7-4590-8838-aac6a59f5469","is_oa":false,"landing_page_url":"http://sers009b.sers.ox.ac.uk/archive/00000843/","pdf_url":null,"source":{"id":"https://openalex.org/S4306402636","display_name":"Oxford University Research Archive (ORA) (University of Oxford)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I40120149","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/I40120149"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"","raw_type":"Conference Proceedings"},{"id":"pmh:oai:eprints.soton.ac.uk:23167","is_oa":false,"landing_page_url":"https://eprints.soton.ac.uk/23167/","pdf_url":null,"source":{"id":"https://openalex.org/S4306401019","display_name":"ePrints Soton (University of Southampton)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I43439940","host_organization_name":"University of Southampton","host_organization_lineage":["https://openalex.org/I43439940"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Conference or Workshop Item"},{"id":"pmh:oai:ora.ox.ac.uk:uuid:5bcb2526-d3d7-4590-8838-aac6a59f5469","is_oa":false,"landing_page_url":"https://ora.ox.ac.uk/objects/uuid:5bcb2526-d3d7-4590-8838-aac6a59f5469","pdf_url":null,"source":{"id":"https://openalex.org/S4306402636","display_name":"Oxford University Research Archive (ORA) (University of Oxford)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I40120149","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/I40120149"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Oxford University Research Archive - Valet","raw_type":"Conference item"}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.6299999952316284,"id":"https://metadata.un.org/sdg/9","display_name":"Industry, innovation and infrastructure"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":11,"referenced_works":["https://openalex.org/W1492522106","https://openalex.org/W1549518189","https://openalex.org/W2058963461","https://openalex.org/W2079539353","https://openalex.org/W2093221728","https://openalex.org/W2168739968","https://openalex.org/W2249307040","https://openalex.org/W2477521491","https://openalex.org/W4233510833","https://openalex.org/W6629591065","https://openalex.org/W6691653631"],"related_works":["https://openalex.org/W2390978845","https://openalex.org/W1484291088","https://openalex.org/W2380275559","https://openalex.org/W2181389252","https://openalex.org/W2382379819","https://openalex.org/W2101632560","https://openalex.org/W4239353700","https://openalex.org/W2056467377","https://openalex.org/W1606797450","https://openalex.org/W2152946574"],"abstract_inverted_index":{"The":[0,35,65,79],"overall":[1],"aim":[2],"of":[3,18,21,30,48,76,91],"the":[4,11,19,28,46],"BioSimGrid":[5,32],"project":[6],"(www.biosimgrid.org)":[7],"is":[8],"to":[9,14,70],"exploit":[10],"grid":[12,51,57,97],"infrastructure":[13],"enable":[15],"comparative":[16],"analysis":[17],"results":[20],"biomolecular":[22],"simulations.":[23],"In":[24],"particular,":[25],"we":[26],"present":[27],"implementation":[29],"current":[31],"Web":[33],"portal.":[34],"portal":[36,77,80],"has":[37,67],"a":[38],"SOA":[39],"(service":[40],"oriented":[41],"architecture)":[42,53],"framework":[43],"built":[44],"on":[45],"layer":[47],"OGSA":[49],"(open":[50,56],"service":[52,58],"and":[54,62,87,103],"OGSA-DAI":[55],"architecture":[59],"database":[60],"access":[61],"integration)":[63],"middleware.":[64],"PortalLib":[66],"been":[68],"developed":[69],"allow":[71],"RAD":[72],"(rapid":[73],"application":[74],"development)":[75],"applications.":[78],"also":[81],"integrates":[82],"PKI":[83],"(public":[84],"key":[85],"infrastructure)":[86],"supports":[88],"two":[89],"levels":[90],"distributed":[92],"SSO":[93,99,106],"(single":[94],"sign":[95],"on):":[96],"certificate-based":[98],"for":[100,107],"high":[101],"security,":[102],"user/pass":[104],"based":[105],"maximal":[108],"flexibility.":[109]},"counts_by_year":[{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":2},{"year":2012,"cited_by_count":1}],"updated_date":"2026-07-29T14:22:42.915294","created_date":"2025-10-10T00:00:00"}
