{"id":"https://openalex.org/W4387485901","doi":"https://doi.org/10.1109/istc57237.2023.10273487","title":"Improved constructions of secondary structure avoidance codes for DNA sequences","display_name":"Improved constructions of secondary structure avoidance codes for DNA sequences","publication_year":2023,"publication_date":"2023-09-04","ids":{"openalex":"https://openalex.org/W4387485901","doi":"https://doi.org/10.1109/istc57237.2023.10273487"},"language":"en","primary_location":{"id":"doi:10.1109/istc57237.2023.10273487","is_oa":false,"landing_page_url":"http://dx.doi.org/10.1109/istc57237.2023.10273487","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2023 12th International Symposium on Topics in Coding (ISTC)","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100304964","display_name":"Hui Chu","orcid":null},"institutions":[{"id":"https://openalex.org/I154099455","display_name":"Shandong University","ror":"https://ror.org/0207yh398","country_code":"CN","type":"education","lineage":["https://openalex.org/I154099455"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Hui Chu","raw_affiliation_strings":["Shandong University,Key Laboratory of Cryptologic Technology and Information Security of Ministry of Education, School of Cyber Science and Technology,Qingdao,Shandong,China,266237"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Shandong University,Key Laboratory of Cryptologic Technology and Information Security of Ministry of Education, School of Cyber Science and Technology,Qingdao,Shandong,China,266237","institution_ids":["https://openalex.org/I154099455"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100337718","display_name":"Chen Wang","orcid":"https://orcid.org/0009-0007-3180-3067"},"institutions":[{"id":"https://openalex.org/I154099455","display_name":"Shandong University","ror":"https://ror.org/0207yh398","country_code":"CN","type":"education","lineage":["https://openalex.org/I154099455"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Chen Wang","raw_affiliation_strings":["Shandong University,Key Laboratory of Cryptologic Technology and Information Security of Ministry of Education, School of Cyber Science and Technology,Qingdao,Shandong,China,266237"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Shandong University,Key Laboratory of Cryptologic Technology and Information Security of Ministry of Education, School of Cyber Science and Technology,Qingdao,Shandong,China,266237","institution_ids":["https://openalex.org/I154099455"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100410218","display_name":"Yiwei Zhang","orcid":"https://orcid.org/0000-0002-5158-4187"},"institutions":[{"id":"https://openalex.org/I154099455","display_name":"Shandong University","ror":"https://ror.org/0207yh398","country_code":"CN","type":"education","lineage":["https://openalex.org/I154099455"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yiwei Zhang","raw_affiliation_strings":["Shandong University,Key Laboratory of Cryptologic Technology and Information Security of Ministry of Education, School of Cyber Science and Technology,Qingdao,Shandong,China,266237"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Shandong University,Key Laboratory of Cryptologic Technology and Information Security of Ministry of Education, School of Cyber Science and Technology,Qingdao,Shandong,China,266237","institution_ids":["https://openalex.org/I154099455"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I154099455"],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":4,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"1","last_page":"5"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12029","display_name":"DNA and Biological Computing","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12029","display_name":"DNA and Biological Computing","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10207","display_name":"Advanced biosensing and bioanalysis techniques","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9905999898910522,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/complement","display_name":"Complement (music)","score":0.8197530508041382},{"id":"https://openalex.org/keywords/combinatorics","display_name":"Combinatorics","score":0.6761800646781921},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.6176592707633972},{"id":"https://openalex.org/keywords/integer","display_name":"Integer (computer science)","score":0.5888660550117493},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.5266834497451782},{"id":"https://openalex.org/keywords/dna","display_name":"DNA","score":0.4553866386413574},{"id":"https://openalex.org/keywords/discrete-mathematics","display_name":"Discrete mathematics","score":0.41760197281837463},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.22992214560508728},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.16424372792243958},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.13183072209358215}],"concepts":[{"id":"https://openalex.org/C112313634","wikidata":"https://www.wikidata.org/wiki/Q7886648","display_name":"Complement (music)","level":5,"score":0.8197530508041382},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.6761800646781921},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.6176592707633972},{"id":"https://openalex.org/C97137487","wikidata":"https://www.wikidata.org/wiki/Q729138","display_name":"Integer (computer science)","level":2,"score":0.5888660550117493},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.5266834497451782},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.4553866386413574},{"id":"https://openalex.org/C118615104","wikidata":"https://www.wikidata.org/wiki/Q121416","display_name":"Discrete mathematics","level":1,"score":0.41760197281837463},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.22992214560508728},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.16424372792243958},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.13183072209358215},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C188082640","wikidata":"https://www.wikidata.org/wiki/Q1780899","display_name":"Complementation","level":4,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C127716648","wikidata":"https://www.wikidata.org/wiki/Q104053","display_name":"Phenotype","level":3,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/istc57237.2023.10273487","is_oa":false,"landing_page_url":"http://dx.doi.org/10.1109/istc57237.2023.10273487","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2023 12th International Symposium on Topics in Coding (ISTC)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320337504","display_name":"Research and Development","ror":"https://ror.org/027s68j25"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":14,"referenced_works":["https://openalex.org/W1504030323","https://openalex.org/W1977312644","https://openalex.org/W2000191287","https://openalex.org/W2009095852","https://openalex.org/W2025383314","https://openalex.org/W2060886353","https://openalex.org/W2162980030","https://openalex.org/W2963960014","https://openalex.org/W3010362682","https://openalex.org/W3022200423","https://openalex.org/W3091919520","https://openalex.org/W3093288951","https://openalex.org/W4328054491","https://openalex.org/W4386075232"],"related_works":["https://openalex.org/W2382566571","https://openalex.org/W2349321798","https://openalex.org/W2366686860","https://openalex.org/W3036520466","https://openalex.org/W2350859087","https://openalex.org/W2387118502","https://openalex.org/W4233775131","https://openalex.org/W2391262724","https://openalex.org/W1986903754","https://openalex.org/W2953245366"],"abstract_inverted_index":{"In":[0,121,151],"a":[1,28,95,106,127],"DNA":[2,31,114,117],"sequence,":[3],"we":[4,124],"have":[5,155],"the":[6,25,44,110,145],"celebrated":[7],"Watson-Crick":[8],"complement":[9,50,79,101],"$\\overline{T}=A,":[10],"\\overline{A}=":[11],"{T},":[12],"\\overline{C}=":[13],"G$,":[14],"and":[15,38,73,103,119,143,159,165],"$\\overline{G}=":[16],"C$.":[17],"The":[18,87],"phenomenon":[19],"of":[20,27,46,66,89,112,130,138],"secondary":[21,90,139],"structure":[22,91,140],"refers":[23],"to":[24,33,97],"tendency":[26],"single":[29],"stranded":[30],"sequence":[32,96],"fold":[34],"back":[35],"upon":[36],"itself,":[37],"it":[39,104],"is":[40,105],"usually":[41],"caused":[42],"by":[43,134],"existence":[45],"two":[47,62],"non-overlapping":[48,63],"reverse":[49,78,100],"consecutive":[51,64],"subsequences,":[52,102],"defined":[53],"as":[54,70],"follows.":[55],"Given":[56],"an":[57],"integer":[58],"$m":[59],"\\geq":[60],"2$,":[61],"subsequences":[65],"length":[67],"m,":[68],"denoted":[69],"$x=(x_{1},":[71],"x_{m})$":[72],"$y=(y_{1},":[74],"y_{m})$,":[75],"are":[76],"called":[77],"if":[80],"$x_{i}=\\overline{y_{m-i+1}}$":[81],"for":[82,116,147],"1$\\leq":[83],"i":[84],"\\leq":[85],"m$.":[86],"property":[88],"avoidance":[92,141],"(SSA)":[93],"forbids":[94],"contain":[98],"such":[99],"key":[107],"criterion":[108],"in":[109],"design":[111],"single-stranded":[113],"sequences":[115],"computing":[118],"storage.":[120],"this":[122],"paper,":[123],"improve":[125],"on":[126],"recent":[128],"result":[129],"Nguyen":[131],"et":[132],"al.,":[133],"introducing":[135],"explicit":[136],"constructions":[137,154],"codes":[142],"analyzing":[144],"capacity":[146],"any":[148],"given":[149],"m.":[150],"particular,":[152],"our":[153],"optimal":[156],"rate":[157],"1.1679bits/nt":[158],"1.5515bits/nt":[160],"when":[161],"m":[162,166],"=":[163],"2":[164],"+":[167],"3,":[168],"respectively.":[169]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":3}],"updated_date":"2026-07-14T23:27:15.235271","created_date":"2025-10-10T00:00:00"}
