{"id":"https://openalex.org/W4415366717","doi":"https://doi.org/10.1109/isit63088.2025.11195710","title":"Error-Correcting Codes for Labeled DNA Sequences","display_name":"Error-Correcting Codes for Labeled DNA Sequences","publication_year":2025,"publication_date":"2025-06-22","ids":{"openalex":"https://openalex.org/W4415366717","doi":"https://doi.org/10.1109/isit63088.2025.11195710"},"language":null,"primary_location":{"id":"doi:10.1109/isit63088.2025.11195710","is_oa":false,"landing_page_url":"https://doi.org/10.1109/isit63088.2025.11195710","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2025 IEEE International Symposium on Information Theory (ISIT)","raw_type":"proceedings-article"},"type":"article","indexed_in":["arxiv","crossref"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://arxiv.org/pdf/2511.01280","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5091957275","display_name":"Dganit Hanania","orcid":"https://orcid.org/0009-0005-5976-2047"},"institutions":[{"id":"https://openalex.org/I174306211","display_name":"Technion \u2013 Israel Institute of Technology","ror":"https://ror.org/03qryx823","country_code":"IL","type":"education","lineage":["https://openalex.org/I174306211"]}],"countries":["IL"],"is_corresponding":true,"raw_author_name":"Dganit Hanania","raw_affiliation_strings":["Technion—Israel Institute of Technology,Department of Computer Science,Haifa,Israel,3200003"],"affiliations":[{"raw_affiliation_string":"Technion—Israel Institute of Technology,Department of Computer Science,Haifa,Israel,3200003","institution_ids":["https://openalex.org/I174306211"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5021586372","display_name":"Eitan Yaakobi","orcid":"https://orcid.org/0000-0002-9851-5234"},"institutions":[{"id":"https://openalex.org/I174306211","display_name":"Technion \u2013 Israel Institute of Technology","ror":"https://ror.org/03qryx823","country_code":"IL","type":"education","lineage":["https://openalex.org/I174306211"]}],"countries":["IL"],"is_corresponding":false,"raw_author_name":"Eitan Yaakobi","raw_affiliation_strings":["Technion—Israel Institute of Technology,Department of Computer Science,Haifa,Israel,3200003"],"affiliations":[{"raw_affiliation_string":"Technion—Israel Institute of Technology,Department of Computer Science,Haifa,Israel,3200003","institution_ids":["https://openalex.org/I174306211"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5091957275"],"corresponding_institution_ids":["https://openalex.org/I174306211"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.25834725,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"1","last_page":"6"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12029","display_name":"DNA and Biological Computing","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12029","display_name":"DNA and Biological Computing","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10207","display_name":"Advanced biosensing and bioanalysis techniques","score":0.996999979019165,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.916700005531311,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/dna","display_name":"DNA","score":0.6014999747276306},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.5630000233650208},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.5024999976158142},{"id":"https://openalex.org/keywords/focus","display_name":"Focus (optics)","score":0.4235999882221222},{"id":"https://openalex.org/keywords/dna-sequencing","display_name":"DNA sequencing","score":0.40639999508857727},{"id":"https://openalex.org/keywords/encoder","display_name":"Encoder","score":0.3919999897480011},{"id":"https://openalex.org/keywords/encoding","display_name":"Encoding (memory)","score":0.36500000953674316}],"concepts":[{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.6014999747276306},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.5630000233650208},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5026000142097473},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.5024999976158142},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.45879998803138733},{"id":"https://openalex.org/C192209626","wikidata":"https://www.wikidata.org/wiki/Q190909","display_name":"Focus (optics)","level":2,"score":0.4235999882221222},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4156999886035919},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.40639999508857727},{"id":"https://openalex.org/C118505674","wikidata":"https://www.wikidata.org/wiki/Q42586063","display_name":"Encoder","level":2,"score":0.3919999897480011},{"id":"https://openalex.org/C125411270","wikidata":"https://www.wikidata.org/wiki/Q18653","display_name":"Encoding (memory)","level":2,"score":0.36500000953674316},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.34599998593330383},{"id":"https://openalex.org/C103088060","wikidata":"https://www.wikidata.org/wiki/Q1062839","display_name":"Error detection and correction","level":2,"score":0.3440999984741211},{"id":"https://openalex.org/C191961535","wikidata":"https://www.wikidata.org/wiki/Q2360205","display_name":"A-DNA","level":3,"score":0.32989999651908875},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.3280999958515167},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.321399986743927},{"id":"https://openalex.org/C32795469","wikidata":"https://www.wikidata.org/wiki/Q5156430","display_name":"Complementary sequences","level":2,"score":0.3124000132083893},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.30790001153945923},{"id":"https://openalex.org/C51064596","wikidata":"https://www.wikidata.org/wiki/Q7452482","display_name":"Sequencing by hybridization","level":5,"score":0.2904999852180481},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.2777000069618225},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2630999982357025},{"id":"https://openalex.org/C82047324","wikidata":"https://www.wikidata.org/wiki/Q177126","display_name":"DNA computing","level":3,"score":0.26019999384880066},{"id":"https://openalex.org/C185581394","wikidata":"https://www.wikidata.org/wiki/Q145911","display_name":"Base pair","level":3,"score":0.2533000111579895}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1109/isit63088.2025.11195710","is_oa":false,"landing_page_url":"https://doi.org/10.1109/isit63088.2025.11195710","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2025 IEEE International Symposium on Information Theory (ISIT)","raw_type":"proceedings-article"},{"id":"pmh:oai:arXiv.org:2511.01280","is_oa":true,"landing_page_url":"http://arxiv.org/abs/2511.01280","pdf_url":"https://arxiv.org/pdf/2511.01280","source":{"id":"https://openalex.org/S4393918464","display_name":"ArXiv.org","issn_l":"2331-8422","issn":["2331-8422"],"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"}],"best_oa_location":{"id":"pmh:oai:arXiv.org:2511.01280","is_oa":true,"landing_page_url":"http://arxiv.org/abs/2511.01280","pdf_url":"https://arxiv.org/pdf/2511.01280","source":{"id":"https://openalex.org/S4393918464","display_name":"ArXiv.org","issn_l":"2331-8422","issn":["2331-8422"],"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G4612935571","display_name":null,"funder_award_id":"101045114,101115134","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"}],"funders":[{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4415366717.pdf"},"referenced_works_count":30,"referenced_works":["https://openalex.org/W2019374755","https://openalex.org/W2043890495","https://openalex.org/W2045373434","https://openalex.org/W2049880801","https://openalex.org/W2057437773","https://openalex.org/W2081354249","https://openalex.org/W2082173153","https://openalex.org/W2092031626","https://openalex.org/W2111183991","https://openalex.org/W2127236769","https://openalex.org/W2297946362","https://openalex.org/W2526251771","https://openalex.org/W2563260368","https://openalex.org/W2570098784","https://openalex.org/W2581920909","https://openalex.org/W2601746657","https://openalex.org/W2735920813","https://openalex.org/W2900583157","https://openalex.org/W2947049608","https://openalex.org/W2963183421","https://openalex.org/W2970217177","https://openalex.org/W2973582997","https://openalex.org/W2975460127","https://openalex.org/W3026609602","https://openalex.org/W3080947752","https://openalex.org/W3138196164","https://openalex.org/W3167479850","https://openalex.org/W4386075118","https://openalex.org/W4401694040","https://openalex.org/W4408145725"],"related_works":[],"abstract_inverted_index":{"Labeling":[0],"of":[1,27,67,76,83],"DNA":[2,9,41,84,92],"molecules":[3],"is":[4],"a":[5],"fundamental":[6],"technique":[7],"for":[8,39,50,89],"visualization":[10],"and":[11,45,54,70],"analysis.":[12],"This":[13],"process":[14],"was":[15],"mathematically":[16],"modeled":[17],"in":[18],"[1],":[19],"where":[20],"the":[21,25,28,64,73,81],"received":[22],"sequence":[23],"indicates":[24],"positions":[26],"used":[29],"labels.":[30],"In":[31],"this":[32],"work,":[33],"we":[34],"develop":[35],"error":[36],"correcting":[37],"codes":[38],"labeled":[40],"sequences,":[42],"establishing":[43],"bounds":[44],"constructing":[46],"explicit":[47],"systematic":[48],"encoders":[49],"single":[51],"substitution,":[52],"insertion,":[53],"deletion":[55],"errors.":[56],"We":[57],"focus":[58],"on":[59],"two":[60],"cases:":[61],"(1)":[62],"using":[63,72],"complete":[65],"set":[66,75],"length-two":[68,77],"labels":[69,78],"(2)":[71],"minimal":[74],"that":[79],"ensures":[80],"recovery":[82],"sequences":[85],"from":[86],"their":[87],"labeling":[88],"'almost'":[90],"all":[91],"sequences.":[93]},"counts_by_year":[],"updated_date":"2026-04-09T08:11:56.329763","created_date":"2025-10-21T00:00:00"}