{"id":"https://openalex.org/W4289655382","doi":"https://doi.org/10.1109/isit50566.2022.9834472","title":"Genomic Compression with Decoder Alignment under Single Deletion and Multiple Substitutions","display_name":"Genomic Compression with Decoder Alignment under Single Deletion and Multiple Substitutions","publication_year":2022,"publication_date":"2022-06-26","ids":{"openalex":"https://openalex.org/W4289655382","doi":"https://doi.org/10.1109/isit50566.2022.9834472"},"language":"en","primary_location":{"id":"doi:10.1109/isit50566.2022.9834472","is_oa":false,"landing_page_url":"https://doi.org/10.1109/isit50566.2022.9834472","pdf_url":null,"source":{"id":"https://openalex.org/S4363604560","display_name":"2022 IEEE International Symposium on Information Theory (ISIT)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"conference"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2022 IEEE International Symposium on Information Theory (ISIT)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5030511825","display_name":"Yotam Gershon","orcid":"https://orcid.org/0000-0001-5612-0659"},"institutions":[{"id":"https://openalex.org/I174306211","display_name":"Technion \u2013 Israel Institute of Technology","ror":"https://ror.org/03qryx823","country_code":"IL","type":"education","lineage":["https://openalex.org/I174306211"]}],"countries":["IL"],"is_corresponding":true,"raw_author_name":"Yotam Gershon","raw_affiliation_strings":["Technion - Israel Institute of Technology,The Viterbi Faculty of Electrical and Computer Engineering","The Viterbi Faculty of Electrical and Computer Engineering, Technion - Israel Institute of Technology"],"affiliations":[{"raw_affiliation_string":"Technion - Israel Institute of Technology,The Viterbi Faculty of Electrical and Computer Engineering","institution_ids":["https://openalex.org/I174306211"]},{"raw_affiliation_string":"The Viterbi Faculty of Electrical and Computer Engineering, Technion - Israel Institute of Technology","institution_ids":["https://openalex.org/I174306211"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5063057008","display_name":"Yuval Cassuto","orcid":"https://orcid.org/0000-0001-6369-6699"},"institutions":[{"id":"https://openalex.org/I174306211","display_name":"Technion \u2013 Israel Institute of Technology","ror":"https://ror.org/03qryx823","country_code":"IL","type":"education","lineage":["https://openalex.org/I174306211"]}],"countries":["IL"],"is_corresponding":false,"raw_author_name":"Yuval Cassuto","raw_affiliation_strings":["Technion - Israel Institute of Technology,The Viterbi Faculty of Electrical and Computer Engineering","The Viterbi Faculty of Electrical and Computer Engineering, Technion - Israel Institute of Technology"],"affiliations":[{"raw_affiliation_string":"Technion - Israel Institute of Technology,The Viterbi Faculty of Electrical and Computer Engineering","institution_ids":["https://openalex.org/I174306211"]},{"raw_affiliation_string":"The Viterbi Faculty of Electrical and Computer Engineering, Technion - Israel Institute of Technology","institution_ids":["https://openalex.org/I174306211"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5030511825"],"corresponding_institution_ids":["https://openalex.org/I174306211"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.11946203,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"998","last_page":"1003"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12029","display_name":"DNA and Biological Computing","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12029","display_name":"DNA and Biological Computing","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9934999942779541,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7196016907691956},{"id":"https://openalex.org/keywords/shotgun-sequencing","display_name":"Shotgun sequencing","score":0.5289331078529358},{"id":"https://openalex.org/keywords/coding","display_name":"Coding (social sciences)","score":0.4922424852848053},{"id":"https://openalex.org/keywords/decoding-methods","display_name":"Decoding methods","score":0.4861430823802948},{"id":"https://openalex.org/keywords/data-compression","display_name":"Data compression","score":0.4446479082107544},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.43771177530288696},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.40906980633735657},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.3684234619140625},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.36638492345809937},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.20572251081466675},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1923973560333252},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.1619260609149933},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.11893171072006226}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7196016907691956},{"id":"https://openalex.org/C101985253","wikidata":"https://www.wikidata.org/wiki/Q1073526","display_name":"Shotgun sequencing","level":4,"score":0.5289331078529358},{"id":"https://openalex.org/C179518139","wikidata":"https://www.wikidata.org/wiki/Q5140297","display_name":"Coding (social sciences)","level":2,"score":0.4922424852848053},{"id":"https://openalex.org/C57273362","wikidata":"https://www.wikidata.org/wiki/Q576722","display_name":"Decoding methods","level":2,"score":0.4861430823802948},{"id":"https://openalex.org/C78548338","wikidata":"https://www.wikidata.org/wiki/Q2493","display_name":"Data compression","level":2,"score":0.4446479082107544},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.43771177530288696},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.40906980633735657},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.3684234619140625},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.36638492345809937},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.20572251081466675},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1923973560333252},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.1619260609149933},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.11893171072006226},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/isit50566.2022.9834472","is_oa":false,"landing_page_url":"https://doi.org/10.1109/isit50566.2022.9834472","pdf_url":null,"source":{"id":"https://openalex.org/S4363604560","display_name":"2022 IEEE International Symposium on Information Theory (ISIT)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"conference"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2022 IEEE International Symposium on Information Theory (ISIT)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320322252","display_name":"Israel Science Foundation","ror":"https://ror.org/04sazxf24"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":14,"referenced_works":["https://openalex.org/W1647671624","https://openalex.org/W1868552688","https://openalex.org/W2068868284","https://openalex.org/W2099213070","https://openalex.org/W2104454746","https://openalex.org/W2108244046","https://openalex.org/W2121716038","https://openalex.org/W2138256990","https://openalex.org/W2142423295","https://openalex.org/W2163994351","https://openalex.org/W2523268639","https://openalex.org/W3086976386","https://openalex.org/W3197314919","https://openalex.org/W6636915900"],"related_works":["https://openalex.org/W2417514914","https://openalex.org/W2161474341","https://openalex.org/W4302615923","https://openalex.org/W1974101135","https://openalex.org/W3203142394","https://openalex.org/W2351061015","https://openalex.org/W2017509870","https://openalex.org/W4220731478","https://openalex.org/W4242191701","https://openalex.org/W1841715584"],"abstract_inverted_index":{"We":[0],"address":[1],"the":[2,22,29,46,63,84,99],"problem":[3],"of":[4,83,87,104],"compressing":[5],"genomic":[6],"read":[7,100],"data":[8],"produced":[9],"by":[10,34],"modern":[11],"shotgun":[12],"sequencing":[13],"technologies,":[14],"where":[15],"a":[16,53,58,71,81,105],"reference":[17],"genome,":[18],"closely":[19],"similar":[20],"to":[21,56,97],"sequenced":[23],"one,":[24],"is":[25],"available":[26],"only":[27],"at":[28],"decoder.":[30,47,107],"This":[31],"problem,":[32],"addressed":[33,65],"distributed":[35],"source":[36],"coding":[37],"techniques,":[38],"requires":[39],"an":[40],"alignment":[41,76],"and":[42,79],"validation":[43],"layer":[44],"in":[45],"In":[48],"this":[49,88],"work,":[50,55],"we":[51],"extend":[52],"previous":[54],"allow":[57],"single":[59],"deletion":[60,78],"along":[61],"with":[62],"previously":[64],"multiple":[66,102],"substitutions.":[67],"The":[68],"results":[69],"include":[70],"new":[72],"distance":[73,89],"for":[74],"efficient":[75],"under":[77],"substitutions,":[80],"derivation":[82],"exact":[85],"distribution":[86],"on":[90],"random":[91],"sequences,":[92],"as":[93,95],"well":[94],"procedures":[96],"recover":[98],"from":[101],"invocations":[103],"substitutions-only":[106]},"counts_by_year":[],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
