{"id":"https://openalex.org/W2902337022","doi":"https://doi.org/10.1109/isit.2019.8849382","title":"Private Shotgun DNA Sequencing","display_name":"Private Shotgun DNA Sequencing","publication_year":2019,"publication_date":"2019-07-01","ids":{"openalex":"https://openalex.org/W2902337022","doi":"https://doi.org/10.1109/isit.2019.8849382","mag":"2902337022"},"language":"en","primary_location":{"id":"doi:10.1109/isit.2019.8849382","is_oa":false,"landing_page_url":"https://doi.org/10.1109/isit.2019.8849382","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2019 IEEE International Symposium on Information Theory (ISIT)","raw_type":"proceedings-article"},"type":"preprint","indexed_in":["arxiv","crossref","datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://arxiv.org/pdf/1811.10693","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5052543660","display_name":"Ali Gholami","orcid":"https://orcid.org/0000-0003-4480-7984"},"institutions":[{"id":"https://openalex.org/I133529467","display_name":"Sharif University of Technology","ror":"https://ror.org/024c2fq17","country_code":"IR","type":"education","lineage":["https://openalex.org/I133529467"]}],"countries":["IR"],"is_corresponding":true,"raw_author_name":"Ali Gholami","raw_affiliation_strings":["Department of Electrical Engineering, Sharif University of Technology","[Dept. of Electrical Eng. Sharif University of Technology]"],"affiliations":[{"raw_affiliation_string":"Department of Electrical Engineering, Sharif University of Technology","institution_ids":["https://openalex.org/I133529467"]},{"raw_affiliation_string":"[Dept. of Electrical Eng. Sharif University of Technology]","institution_ids":["https://openalex.org/I133529467"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5113662214","display_name":"Mohammad Ali Maddah-Ali","orcid":null},"institutions":[{"id":"https://openalex.org/I72090969","display_name":"Nokia (United States)","ror":"https://ror.org/038km2573","country_code":"US","type":"company","lineage":["https://openalex.org/I2738502077","https://openalex.org/I72090969"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mohammad Ali Maddah-Ali","raw_affiliation_strings":["Nokia Bell Labs, Holmdel, NJ, USA","Nokia-Bell Labs,Holmdel,NJ,USA"],"affiliations":[{"raw_affiliation_string":"Nokia Bell Labs, Holmdel, NJ, USA","institution_ids":["https://openalex.org/I72090969"]},{"raw_affiliation_string":"Nokia-Bell Labs,Holmdel,NJ,USA","institution_ids":["https://openalex.org/I72090969"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5043842702","display_name":"Seyed Abolfazl Motahari","orcid":"https://orcid.org/0000-0002-7639-0362"},"institutions":[{"id":"https://openalex.org/I133529467","display_name":"Sharif University of Technology","ror":"https://ror.org/024c2fq17","country_code":"IR","type":"education","lineage":["https://openalex.org/I133529467"]}],"countries":["IR"],"is_corresponding":false,"raw_author_name":"Seyed Abolfazl Motahari","raw_affiliation_strings":["Department of Computer Engineering, Sharif University of Technology","[Department of Computer Engineering, Sharif University of Technology]"],"affiliations":[{"raw_affiliation_string":"Department of Computer Engineering, Sharif University of Technology","institution_ids":["https://openalex.org/I133529467"]},{"raw_affiliation_string":"[Department of Computer Engineering, Sharif University of Technology]","institution_ids":["https://openalex.org/I133529467"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5052543660"],"corresponding_institution_ids":["https://openalex.org/I133529467"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.00700429,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"171","last_page":"175"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10764","display_name":"Privacy-Preserving Technologies in Data","score":0.9977999925613403,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10764","display_name":"Privacy-Preserving Technologies in Data","score":0.9977999925613403,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10237","display_name":"Cryptography and Data Security","score":0.9883999824523926,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T13768","display_name":"Oral and gingival health research","score":0.9779999852180481,"subfield":{"id":"https://openalex.org/subfields/3611","display_name":"Pharmacy"},"field":{"id":"https://openalex.org/fields/36","display_name":"Health Professions"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/dna-sequencer","display_name":"DNA sequencer","score":0.8781359791755676},{"id":"https://openalex.org/keywords/dna-sequencing","display_name":"DNA sequencing","score":0.605684220790863},{"id":"https://openalex.org/keywords/shotgun-sequencing","display_name":"Shotgun sequencing","score":0.6040419936180115},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5683475136756897},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.546070396900177},{"id":"https://openalex.org/keywords/dna","display_name":"DNA","score":0.5237286686897278},{"id":"https://openalex.org/keywords/constraint","display_name":"Constraint (computer-aided design)","score":0.459663987159729},{"id":"https://openalex.org/keywords/sequence-assembly","display_name":"Sequence assembly","score":0.44148746132850647},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.41748809814453125},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4164603352546692},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2600098252296448},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2428012490272522},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.16219592094421387},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.14566469192504883}],"concepts":[{"id":"https://openalex.org/C70712619","wikidata":"https://www.wikidata.org/wiki/Q908889","display_name":"DNA sequencer","level":4,"score":0.8781359791755676},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.605684220790863},{"id":"https://openalex.org/C101985253","wikidata":"https://www.wikidata.org/wiki/Q1073526","display_name":"Shotgun sequencing","level":4,"score":0.6040419936180115},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5683475136756897},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.546070396900177},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.5237286686897278},{"id":"https://openalex.org/C2776036281","wikidata":"https://www.wikidata.org/wiki/Q48769818","display_name":"Constraint (computer-aided design)","level":2,"score":0.459663987159729},{"id":"https://openalex.org/C18949551","wikidata":"https://www.wikidata.org/wiki/Q740578","display_name":"Sequence assembly","level":5,"score":0.44148746132850647},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.41748809814453125},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4164603352546692},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2600098252296448},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2428012490272522},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.16219592094421387},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.14566469192504883},{"id":"https://openalex.org/C201995342","wikidata":"https://www.wikidata.org/wiki/Q682496","display_name":"Systems engineering","level":1,"score":0.0},{"id":"https://openalex.org/C78519656","wikidata":"https://www.wikidata.org/wiki/Q101333","display_name":"Mechanical engineering","level":1,"score":0.0},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1109/isit.2019.8849382","is_oa":false,"landing_page_url":"https://doi.org/10.1109/isit.2019.8849382","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2019 IEEE International Symposium on Information Theory (ISIT)","raw_type":"proceedings-article"},{"id":"pmh:oai:arXiv.org:1811.10693","is_oa":true,"landing_page_url":"http://arxiv.org/abs/1811.10693","pdf_url":"https://arxiv.org/pdf/1811.10693","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},{"id":"mag:2902337022","is_oa":true,"landing_page_url":"https://arxiv.org/pdf/1811.10693","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"arXiv (Cornell University)","raw_type":null},{"id":"doi:10.48550/arxiv.1811.10693","is_oa":true,"landing_page_url":"https://doi.org/10.48550/arxiv.1811.10693","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article"}],"best_oa_location":{"id":"pmh:oai:arXiv.org:1811.10693","is_oa":true,"landing_page_url":"http://arxiv.org/abs/1811.10693","pdf_url":"https://arxiv.org/pdf/1811.10693","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},"sustainable_development_goals":[{"score":0.6100000143051147,"id":"https://metadata.un.org/sdg/16","display_name":"Peace, Justice and strong institutions"}],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2902337022.pdf","grobid_xml":"https://content.openalex.org/works/W2902337022.grobid-xml"},"referenced_works_count":24,"referenced_works":["https://openalex.org/W1606251440","https://openalex.org/W1948797720","https://openalex.org/W1976719696","https://openalex.org/W1980132682","https://openalex.org/W1992735538","https://openalex.org/W2007807048","https://openalex.org/W2042103448","https://openalex.org/W2045872719","https://openalex.org/W2065265824","https://openalex.org/W2076000582","https://openalex.org/W2079501979","https://openalex.org/W2105193431","https://openalex.org/W2110343195","https://openalex.org/W2116655074","https://openalex.org/W2121627353","https://openalex.org/W2124985265","https://openalex.org/W2140911647","https://openalex.org/W2150307013","https://openalex.org/W2156908711","https://openalex.org/W2159024459","https://openalex.org/W2165067028","https://openalex.org/W2599749253","https://openalex.org/W2962692592","https://openalex.org/W6756480501"],"related_works":["https://openalex.org/W2245008327","https://openalex.org/W2949819776","https://openalex.org/W2938605561","https://openalex.org/W2520960636","https://openalex.org/W2266689359","https://openalex.org/W2969660257","https://openalex.org/W2954257316","https://openalex.org/W2240101454","https://openalex.org/W2788257106","https://openalex.org/W2169766521","https://openalex.org/W2795076092","https://openalex.org/W2735261832","https://openalex.org/W2816970757","https://openalex.org/W2061195711","https://openalex.org/W2398522641","https://openalex.org/W2950529595","https://openalex.org/W2139701562","https://openalex.org/W2900090083","https://openalex.org/W208011080","https://openalex.org/W2969575130"],"abstract_inverted_index":{"Current":[0],"techniques":[1,165],"in":[2],"sequencing":[3,12],"a":[4,7,11,91],"genome":[5,20],"allow":[6],"service":[8],"provider":[9],"(e.g.":[10],"company)":[13],"to":[14,18,49,55,136,154,157,169],"have":[15],"full":[16],"access":[17],"the":[19,24,39,46,51,56,63,71,78,83,86,98,102,108,133,137,143,155,158,174],"information,":[21],"and":[22,70,85,104],"thus":[23],"privacy":[25,99],"of":[26,41,65,68,73,145],"individuals":[27],"regarding":[28],"their":[29],"lifetime":[30],"secret":[31],"is":[32,48,80,88],"violated.":[33],"In":[34],"this":[35],"paper,":[36],"we":[37,111,124],"introduce":[38],"problem":[40],"private":[42,54],"DNA":[43,52,69,74,148],"sequencing,":[44],"where":[45,62],"goal":[47],"keep":[50],"sequence":[53],"sequencer.":[57],"We":[58,160],"propose":[59],"an":[60,113],"architecture,":[61],"task":[64,72],"reading":[66],"fragments":[67,135,144],"assembly":[75],"are":[76,151],"separated,":[77],"former":[79],"done":[81],"at":[82,90,101,107,173],"sequencer(s),":[84],"later":[87],"completed":[89],"local":[92],"trusted":[93],"data":[94,109,139],"collector.":[95],"To":[96],"satisfy":[97,170],"constraint":[100],"sequencer":[103],"reconstruction":[105],"condition":[106],"collector,":[110,140],"create":[112],"information":[114],"gap":[115],"between":[116],"these":[117,163],"two":[118,121,164],"relying":[119],"on":[120],"techniques:":[122],"(i)":[123],"use":[125],"more":[126],"than":[127],"one":[128],"non-colluding":[129],"sequencer,":[130],"all":[131],"reporting":[132],"read":[134],"single":[138],"(ii)":[141],"adding":[142],"some":[146],"known":[147],"molecules,":[149],"which":[150],"still":[152],"unknown":[153],"sequencers,":[156],"pool.":[159],"prove":[161],"that":[162],"provide":[166],"enough":[167],"freedom":[168],"both":[171],"conditions":[172],"same":[175],"time.":[176]},"counts_by_year":[],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
