{"id":"https://openalex.org/W2595770559","doi":"https://doi.org/10.1109/isit.2017.8007104","title":"Noise and uncertainty in string-duplication systems","display_name":"Noise and uncertainty in string-duplication systems","publication_year":2017,"publication_date":"2017-06-01","ids":{"openalex":"https://openalex.org/W2595770559","doi":"https://doi.org/10.1109/isit.2017.8007104","mag":"2595770559"},"language":"en","primary_location":{"id":"doi:10.1109/isit.2017.8007104","is_oa":false,"landing_page_url":"https://doi.org/10.1109/isit.2017.8007104","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2017 IEEE International Symposium on Information Theory (ISIT)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://authors.library.caltech.edu/73557/","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100612200","display_name":"Siddharth Jain","orcid":"https://orcid.org/0000-0002-9164-6119"},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Siddharth Jain","raw_affiliation_strings":["Electrical Engineering, California Institute of Technology, Pasadena, CA, U.S.A"],"affiliations":[{"raw_affiliation_string":"Electrical Engineering, California Institute of Technology, Pasadena, CA, U.S.A","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011621481","display_name":"Farzad Farnoud","orcid":"https://orcid.org/0000-0002-8684-4487"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Farzad Farnoud Hassanzadeh","raw_affiliation_strings":["Electrical & Computer Engineering, University of Virginia, Charlottesvtlle, VA, U.S.A"],"affiliations":[{"raw_affiliation_string":"Electrical & Computer Engineering, University of Virginia, Charlottesvtlle, VA, U.S.A","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054043026","display_name":"Moshe Schwartz","orcid":"https://orcid.org/0000-0002-1449-0026"},"institutions":[{"id":"https://openalex.org/I124227911","display_name":"Ben-Gurion University of the Negev","ror":"https://ror.org/05tkyf982","country_code":"IL","type":"education","lineage":["https://openalex.org/I124227911"]}],"countries":["IL"],"is_corresponding":false,"raw_author_name":"Moshe Schwartz","raw_affiliation_strings":["Electrical and Computer Engineering, Ben-Gurion University of the Negev, Beer Sheva, Israel"],"affiliations":[{"raw_affiliation_string":"Electrical and Computer Engineering, Ben-Gurion University of the Negev, Beer Sheva, Israel","institution_ids":["https://openalex.org/I124227911"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5043861677","display_name":"Jehoshua Bruck","orcid":"https://orcid.org/0000-0001-8474-0812"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Jehoshua Bruck","raw_affiliation_strings":["Electrical Engineering, California Institute of Technology, Pasadena, CA, U.S.A"],"affiliations":[{"raw_affiliation_string":"Electrical Engineering, California Institute of Technology, Pasadena, CA, U.S.A","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5100612200"],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":1.0103,"has_fulltext":true,"cited_by_count":18,"citation_normalized_percentile":{"value":0.74938485,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"409","issue":null,"first_page":"3120","last_page":"3124"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12029","display_name":"DNA and Biological Computing","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12029","display_name":"DNA and Biological Computing","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9973000288009644,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10207","display_name":"Advanced biosensing and bioanalysis techniques","score":0.9961000084877014,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/gene-duplication","display_name":"Gene duplication","score":0.7647063732147217},{"id":"https://openalex.org/keywords/point-mutation","display_name":"Point mutation","score":0.5767195820808411},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.5612446069717407},{"id":"https://openalex.org/keywords/mutation","display_name":"Mutation","score":0.523465096950531},{"id":"https://openalex.org/keywords/noise","display_name":"Noise (video)","score":0.49008285999298096},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.4136800169944763},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3637058138847351},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.2950795292854309},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.196485698223114}],"concepts":[{"id":"https://openalex.org/C7602840","wikidata":"https://www.wikidata.org/wiki/Q746284","display_name":"Gene duplication","level":3,"score":0.7647063732147217},{"id":"https://openalex.org/C176944494","wikidata":"https://www.wikidata.org/wiki/Q1415380","display_name":"Point mutation","level":4,"score":0.5767195820808411},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.5612446069717407},{"id":"https://openalex.org/C501734568","wikidata":"https://www.wikidata.org/wiki/Q42918","display_name":"Mutation","level":3,"score":0.523465096950531},{"id":"https://openalex.org/C99498987","wikidata":"https://www.wikidata.org/wiki/Q2210247","display_name":"Noise (video)","level":3,"score":0.49008285999298096},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.4136800169944763},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3637058138847351},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.2950795292854309},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.196485698223114},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1109/isit.2017.8007104","is_oa":false,"landing_page_url":"https://doi.org/10.1109/isit.2017.8007104","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2017 IEEE International Symposium on Information Theory (ISIT)","raw_type":"proceedings-article"},{"id":"pmh:oai:authors.library.caltech.edu:73557","is_oa":true,"landing_page_url":null,"pdf_url":"https://authors.library.caltech.edu/73557/","source":{"id":"https://openalex.org/S4306402161","display_name":"CaltechAUTHORS (California Institute of Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I122411786","host_organization_name":"California Institute of Technology","host_organization_lineage":["https://openalex.org/I122411786"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Report or Paper"},{"id":"pmh:oai:authors.library.caltech.edu:80534","is_oa":false,"landing_page_url":"https://authors.library.caltech.edu/80534/","pdf_url":null,"source":{"id":"https://openalex.org/S4306402161","display_name":"CaltechAUTHORS (California Institute of Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I122411786","host_organization_name":"California Institute of Technology","host_organization_lineage":["https://openalex.org/I122411786"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Book Section"}],"best_oa_location":{"id":"pmh:oai:authors.library.caltech.edu:73557","is_oa":true,"landing_page_url":null,"pdf_url":"https://authors.library.caltech.edu/73557/","source":{"id":"https://openalex.org/S4306402161","display_name":"CaltechAUTHORS (California Institute of Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I122411786","host_organization_name":"California Institute of Technology","host_organization_lineage":["https://openalex.org/I122411786"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Report or Paper"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2595770559.pdf"},"referenced_works_count":16,"referenced_works":["https://openalex.org/W1606480398","https://openalex.org/W1800115806","https://openalex.org/W1908746084","https://openalex.org/W1964604871","https://openalex.org/W2065247540","https://openalex.org/W2118390049","https://openalex.org/W2139836098","https://openalex.org/W2145960764","https://openalex.org/W2155603715","https://openalex.org/W2168909179","https://openalex.org/W2309020315","https://openalex.org/W2340242219","https://openalex.org/W2552963477","https://openalex.org/W3099104497","https://openalex.org/W3105069054","https://openalex.org/W3105430894"],"related_works":["https://openalex.org/W2146849562","https://openalex.org/W2550943714","https://openalex.org/W3212350425","https://openalex.org/W2024794315","https://openalex.org/W2388007221","https://openalex.org/W2511508046","https://openalex.org/W2028961943","https://openalex.org/W1974452506","https://openalex.org/W2363458739","https://openalex.org/W2385244308"],"abstract_inverted_index":{"Duplication":[0],"mutations":[1,68,92,102,112,121],"play":[2],"a":[3,15,33,104,124,185],"critical":[4],"role":[5],"in":[6,37,69,162,165],"the":[7,38,52,64,70,78,88,98,107,117,128,133,155,166,181,191,201],"generation":[8,79,108],"of":[9,40,54,57,66,72,81,90,100,103,110,119,127,130,168,183,194],"biological":[10],"sequences.":[11],"Simultaneously,":[12],"they":[13],"have":[14,28,47],"deleterious":[16],"effect":[17],"on":[18],"data":[19,24,163],"stored":[20],"using":[21],"in-vivo":[22],"DNA":[23,167],"storage.":[25],"While":[26],"duplications":[27],"been":[29],"studied":[30],"both":[31],"as":[32,190],"sequence-generation":[34],"mechanism":[35],"and":[36,75,138,160],"context":[39],"error":[41],"correction,":[42],"for":[43,141],"simplicity":[44],"these":[45,82,111],"studies":[46],"not":[48],"taken":[49],"into":[50],"account":[51],"presence":[53,71],"other":[55],"types":[56],"mutations.":[58,83,175],"In":[59,176],"this":[60,142,177],"work,":[61],"we":[62,150,179],"consider":[63,180],"capacity":[65,109,134,143],"duplication":[67,101,174],"point-mutation":[73],"noise,":[74],"so":[76],"quantify":[77],"power":[80],"We":[84],"show":[85],"that":[86,149,197],"if":[87,116],"number":[89,99,118,129,193],"point":[91,120],"is":[93,113,135,152],"vanishingly":[94],"small":[95],"compared":[96],"to":[97,123,173,200],"constant":[105,125],"length,":[106],"zero.":[114],"However,":[115],"increases":[122],"fraction":[126],"duplications,":[131],"then":[132],"nonzero.":[136],"Lower":[137],"upper":[139],"bounds":[140],"are":[144],"also":[145],"presented.":[146],"Another":[147],"problem":[148],"study":[151],"concerned":[153],"with":[154,171],"mismatch":[156],"between":[157],"code":[158],"design":[159],"channel":[161],"storage":[164],"living":[169],"organisms":[170],"respect":[172],"context,":[178],"uncertainty":[182],"such":[184],"mismatched":[186],"coding":[187],"scheme":[188],"measured":[189],"maximum":[192],"input":[195],"codewords":[196],"can":[198],"lead":[199],"same":[202],"output.":[203]},"counts_by_year":[{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":4}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}
