{"id":"https://openalex.org/W2340242219","doi":"https://doi.org/10.1109/isit.2016.7541455","title":"Duplication-correcting codes for data storage in the DNA of living organisms","display_name":"Duplication-correcting codes for data storage in the DNA of living organisms","publication_year":2016,"publication_date":"2016-07-01","ids":{"openalex":"https://openalex.org/W2340242219","doi":"https://doi.org/10.1109/isit.2016.7541455","mag":"2340242219"},"language":"en","primary_location":{"id":"doi:10.1109/isit.2016.7541455","is_oa":false,"landing_page_url":"https://doi.org/10.1109/isit.2016.7541455","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2016 IEEE International Symposium on Information Theory (ISIT)","raw_type":"proceedings-article"},"type":"article","indexed_in":["arxiv","crossref"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://arxiv.org/pdf/1606.00397","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100612200","display_name":"Siddharth Jain","orcid":"https://orcid.org/0000-0002-9164-6119"},"institutions":[{"id":"https://openalex.org/I122411786","display_name":"California Institute of Technology","ror":"https://ror.org/05dxps055","country_code":"US","type":"education","lineage":["https://openalex.org/I122411786"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Siddharth Jain","raw_affiliation_strings":["Electrical Engineering, California Institute of Technology, Pasadena, 91125, U.S.A","Electrical Engineering, California Institute of Technology Pasadena, CA, U.S.A"],"affiliations":[{"raw_affiliation_string":"Electrical Engineering, California Institute of Technology, Pasadena, 91125, U.S.A","institution_ids":["https://openalex.org/I122411786"]},{"raw_affiliation_string":"Electrical Engineering, California Institute of Technology Pasadena, CA, U.S.A","institution_ids":["https://openalex.org/I122411786"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011621481","display_name":"Farzad Farnoud","orcid":"https://orcid.org/0000-0002-8684-4487"},"institutions":[{"id":"https://openalex.org/I122411786","display_name":"California Institute of Technology","ror":"https://ror.org/05dxps055","country_code":"US","type":"education","lineage":["https://openalex.org/I122411786"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Farzad Farnoud","raw_affiliation_strings":["Electrical Engineering, California Institute of Technology, Pasadena, 91125, U.S.A","California Institute of Technology, Pasadena, CA, US"],"affiliations":[{"raw_affiliation_string":"Electrical Engineering, California Institute of Technology, Pasadena, 91125, U.S.A","institution_ids":["https://openalex.org/I122411786"]},{"raw_affiliation_string":"California Institute of Technology, Pasadena, CA, US","institution_ids":["https://openalex.org/I122411786"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054043026","display_name":"Moshe Schwartz","orcid":"https://orcid.org/0000-0002-1449-0026"},"institutions":[{"id":"https://openalex.org/I124227911","display_name":"Ben-Gurion University of the Negev","ror":"https://ror.org/05tkyf982","country_code":"IL","type":"education","lineage":["https://openalex.org/I124227911"]}],"countries":["IL"],"is_corresponding":false,"raw_author_name":"Moshe Schwartz","raw_affiliation_strings":["Electrical and Computer Engineering, Ben-Gurion University of the Negev, Beer Sheva 8410501, Israel","Electrical and Computer Engineering, Ben-Gurion University of the Negev, Beer Sheva, Israel"],"affiliations":[{"raw_affiliation_string":"Electrical and Computer Engineering, Ben-Gurion University of the Negev, Beer Sheva 8410501, Israel","institution_ids":["https://openalex.org/I124227911"]},{"raw_affiliation_string":"Electrical and Computer Engineering, Ben-Gurion University of the Negev, Beer Sheva, Israel","institution_ids":["https://openalex.org/I124227911"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5043861677","display_name":"Jehoshua Bruck","orcid":"https://orcid.org/0000-0001-8474-0812"},"institutions":[{"id":"https://openalex.org/I122411786","display_name":"California Institute of Technology","ror":"https://ror.org/05dxps055","country_code":"US","type":"education","lineage":["https://openalex.org/I122411786"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jehoshua Bruck","raw_affiliation_strings":["Electrical Engineering, California Institute of Technology, Pasadena, 91125, U.S.A","Electrical Engineering, California Institute of Technology Pasadena, CA, U.S.A"],"affiliations":[{"raw_affiliation_string":"Electrical Engineering, California Institute of Technology, Pasadena, 91125, U.S.A","institution_ids":["https://openalex.org/I122411786"]},{"raw_affiliation_string":"Electrical Engineering, California Institute of Technology Pasadena, CA, U.S.A","institution_ids":["https://openalex.org/I122411786"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5100612200"],"corresponding_institution_ids":["https://openalex.org/I122411786"],"apc_list":null,"apc_paid":null,"fwci":2.9632,"has_fulltext":true,"cited_by_count":24,"citation_normalized_percentile":{"value":0.91019854,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":null,"issue":null,"first_page":"1028","last_page":"1032"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12029","display_name":"DNA and Biological Computing","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12029","display_name":"DNA and Biological Computing","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10207","display_name":"Advanced biosensing and bioanalysis techniques","score":0.9937999844551086,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12162","display_name":"Cellular Automata and Applications","score":0.98089998960495,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6204464435577393},{"id":"https://openalex.org/keywords/gene-duplication","display_name":"Gene duplication","score":0.6105638742446899},{"id":"https://openalex.org/keywords/indel","display_name":"Indel","score":0.6081134676933289},{"id":"https://openalex.org/keywords/tandem-repeat","display_name":"Tandem repeat","score":0.4973905384540558},{"id":"https://openalex.org/keywords/tandem","display_name":"Tandem","score":0.4760589301586151},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.4364803731441498},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.42559289932250977},{"id":"https://openalex.org/keywords/tandem-exon-duplication","display_name":"Tandem exon duplication","score":0.4183919429779053},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.38212233781814575},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.35870158672332764},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.32086557149887085},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.1472989022731781},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.0966026782989502}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6204464435577393},{"id":"https://openalex.org/C7602840","wikidata":"https://www.wikidata.org/wiki/Q746284","display_name":"Gene duplication","level":3,"score":0.6105638742446899},{"id":"https://openalex.org/C119054055","wikidata":"https://www.wikidata.org/wiki/Q1576681","display_name":"Indel","level":5,"score":0.6081134676933289},{"id":"https://openalex.org/C27149982","wikidata":"https://www.wikidata.org/wiki/Q3456514","display_name":"Tandem repeat","level":4,"score":0.4973905384540558},{"id":"https://openalex.org/C2777814067","wikidata":"https://www.wikidata.org/wiki/Q1752317","display_name":"Tandem","level":2,"score":0.4760589301586151},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.4364803731441498},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.42559289932250977},{"id":"https://openalex.org/C156446351","wikidata":"https://www.wikidata.org/wiki/Q7682435","display_name":"Tandem exon duplication","level":4,"score":0.4183919429779053},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.38212233781814575},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.35870158672332764},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.32086557149887085},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.1472989022731781},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0966026782989502},{"id":"https://openalex.org/C153209595","wikidata":"https://www.wikidata.org/wiki/Q501128","display_name":"Single-nucleotide polymorphism","level":4,"score":0.0},{"id":"https://openalex.org/C192562407","wikidata":"https://www.wikidata.org/wiki/Q228736","display_name":"Materials science","level":0,"score":0.0},{"id":"https://openalex.org/C135763542","wikidata":"https://www.wikidata.org/wiki/Q106016","display_name":"Genotype","level":3,"score":0.0},{"id":"https://openalex.org/C159985019","wikidata":"https://www.wikidata.org/wiki/Q181790","display_name":"Composite material","level":1,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1109/isit.2016.7541455","is_oa":false,"landing_page_url":"https://doi.org/10.1109/isit.2016.7541455","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2016 IEEE International Symposium on Information Theory (ISIT)","raw_type":"proceedings-article"},{"id":"pmh:oai:arXiv.org:1606.00397","is_oa":true,"landing_page_url":"http://arxiv.org/abs/1606.00397","pdf_url":"https://arxiv.org/pdf/1606.00397","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},{"id":"pmh:oai:authors.library.caltech.edu:63940","is_oa":true,"landing_page_url":"https://resolver.caltech.edu/CaltechAUTHORS:20160125-143414675","pdf_url":"https://authors.library.caltech.edu/63940/","source":{"id":"https://openalex.org/S4306402161","display_name":"CaltechAUTHORS (California Institute of Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I122411786","host_organization_name":"California Institute of Technology","host_organization_lineage":["https://openalex.org/I122411786"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Report or Paper"},{"id":"pmh:oai:authors.library.caltech.edu:69869","is_oa":false,"landing_page_url":"https://resolver.caltech.edu/CaltechAUTHORS:20160823-165024070","pdf_url":null,"source":{"id":"https://openalex.org/S4306402161","display_name":"CaltechAUTHORS (California Institute of Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I122411786","host_organization_name":"California Institute of Technology","host_organization_lineage":["https://openalex.org/I122411786"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Book Section"}],"best_oa_location":{"id":"pmh:oai:arXiv.org:1606.00397","is_oa":true,"landing_page_url":"http://arxiv.org/abs/1606.00397","pdf_url":"https://arxiv.org/pdf/1606.00397","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":29,"referenced_works":["https://openalex.org/W114541479","https://openalex.org/W1565611252","https://openalex.org/W1643629030","https://openalex.org/W1800115806","https://openalex.org/W1908746084","https://openalex.org/W1964604871","https://openalex.org/W1986404017","https://openalex.org/W2012120492","https://openalex.org/W2050200641","https://openalex.org/W2065247540","https://openalex.org/W2071328640","https://openalex.org/W2080892263","https://openalex.org/W2082173153","https://openalex.org/W2104557113","https://openalex.org/W2111921000","https://openalex.org/W2118390049","https://openalex.org/W2118827857","https://openalex.org/W2132083478","https://openalex.org/W2139836098","https://openalex.org/W2145960764","https://openalex.org/W2155603715","https://openalex.org/W2168909179","https://openalex.org/W2340242219","https://openalex.org/W2914028408","https://openalex.org/W2963561675","https://openalex.org/W3099104497","https://openalex.org/W3105069054","https://openalex.org/W3105430894","https://openalex.org/W4212873484"],"related_works":["https://openalex.org/W1984349060","https://openalex.org/W3185201469","https://openalex.org/W1883409887","https://openalex.org/W2106870860","https://openalex.org/W2120250745","https://openalex.org/W1978469902","https://openalex.org/W3142592327","https://openalex.org/W20477621","https://openalex.org/W84307880","https://openalex.org/W2362053680"],"abstract_inverted_index":{"The":[0],"ability":[1],"to":[2,35,51,54,90,105,127],"store":[3],"data":[4,56],"in":[5,14,30,84],"the":[6,79,91,138],"DNA":[7],"of":[8,17,24,75,78,99,107,114,124,140],"a":[9,15,73,76,85,97,108,128],"living":[10],"organism":[11],"has":[12],"applications":[13],"variety":[16],"areas":[18],"including":[19],"synthetic":[20],"biology":[21],"and":[22,46,81,111],"watermarking":[23],"patented":[25],"genetically-modified":[26],"organisms.":[27],"Data":[28],"stored":[29],"this":[31,59],"medium":[32],"is":[33],"subject":[34],"errors":[36,66,103],"arising":[37],"from":[38],"various":[39],"mutations,":[40,44],"such":[41],"as":[42],"point":[43],"indels,":[45],"tandem":[47,69,86,122],"duplication,":[48],"which":[49,71],"need":[50],"be":[52],"corrected":[53],"maintain":[55],"integrity.":[57],"In":[58,93],"paper,":[60],"we":[61,95,133],"provide":[62],"error-correcting":[63],"codes":[64,100,119],"for":[65,101,120],"caused":[67],"by":[68],"duplications,":[70],"create":[72],"copy":[74],"block":[77],"sequence":[80],"insert":[82],"it":[83],"manner,":[87],"i.e.,":[88],"next":[89],"original.":[92],"particular,":[94],"present":[96],"family":[98],"correcting":[102,121],"due":[104],"tandem-duplications":[106],"fixed":[109],"length":[110,125],"any":[112],"number":[113],"errors.":[115],"We":[116],"also":[117],"study":[118],"duplications":[123],"up":[126],"given":[129],"constant":[130],"k,":[131],"where":[132],"are":[134],"primarily":[135],"focused":[136],"on":[137],"cases":[139],"k":[141],"=":[142],"2,":[143],"3.":[144]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":6},{"year":2017,"cited_by_count":7},{"year":2016,"cited_by_count":3}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}
