{"id":"https://openalex.org/W2193390805","doi":"https://doi.org/10.1109/isit.2010.5513751","title":"On critical relative distance of DNA codes for additive stem similarity","display_name":"On critical relative distance of DNA codes for additive stem similarity","publication_year":2010,"publication_date":"2010-06-01","ids":{"openalex":"https://openalex.org/W2193390805","doi":"https://doi.org/10.1109/isit.2010.5513751","mag":"2193390805"},"language":"en","primary_location":{"id":"doi:10.1109/isit.2010.5513751","is_oa":false,"landing_page_url":"https://doi.org/10.1109/isit.2010.5513751","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2010 IEEE International Symposium on Information Theory","raw_type":"proceedings-article"},"type":"preprint","indexed_in":["arxiv","crossref"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://arxiv.org/pdf/1001.1278","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5044988387","display_name":"A.G. D'yachkov","orcid":null},"institutions":[{"id":"https://openalex.org/I19880235","display_name":"Lomonosov Moscow State University","ror":"https://ror.org/010pmpe69","country_code":"RU","type":"education","lineage":["https://openalex.org/I19880235"]}],"countries":["RU"],"is_corresponding":true,"raw_author_name":"A. D'yachkov","raw_affiliation_strings":["Department of Probability Theory, Faculty of Mechanics and Mathematics, Moscow State University, Moscow, Russia"],"affiliations":[{"raw_affiliation_string":"Department of Probability Theory, Faculty of Mechanics and Mathematics, Moscow State University, Moscow, Russia","institution_ids":["https://openalex.org/I19880235"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111959801","display_name":"A. Voronina","orcid":null},"institutions":[{"id":"https://openalex.org/I19880235","display_name":"Lomonosov Moscow State University","ror":"https://ror.org/010pmpe69","country_code":"RU","type":"education","lineage":["https://openalex.org/I19880235"]}],"countries":["RU"],"is_corresponding":false,"raw_author_name":"A. Voronina","raw_affiliation_strings":["Department of Probability Theory, Faculty of Mechanics and Mathematics, Moscow State University, Moscow, Russia"],"affiliations":[{"raw_affiliation_string":"Department of Probability Theory, Faculty of Mechanics and Mathematics, Moscow State University, Moscow, Russia","institution_ids":["https://openalex.org/I19880235"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110053397","display_name":"A. Macula","orcid":null},"institutions":[{"id":"https://openalex.org/I1280414376","display_name":"United States Air Force Research Laboratory","ror":"https://ror.org/02e2egq70","country_code":"US","type":"facility","lineage":["https://openalex.org/I1280414376","https://openalex.org/I1330347796","https://openalex.org/I4210102105","https://openalex.org/I4389425425"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"A. Macula","raw_affiliation_strings":["IFTC, Air Force Research Laboratory, Rome, NY, USA"],"affiliations":[{"raw_affiliation_string":"IFTC, Air Force Research Laboratory, Rome, NY, USA","institution_ids":["https://openalex.org/I1280414376"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5109253350","display_name":"Thomas E. Renz","orcid":null},"institutions":[{"id":"https://openalex.org/I1280414376","display_name":"United States Air Force Research Laboratory","ror":"https://ror.org/02e2egq70","country_code":"US","type":"facility","lineage":["https://openalex.org/I1280414376","https://openalex.org/I1330347796","https://openalex.org/I4210102105","https://openalex.org/I4389425425"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"T. Renz","raw_affiliation_strings":["IFTC, Air Force Research Laboratory, Rome, NY, USA"],"affiliations":[{"raw_affiliation_string":"IFTC, Air Force Research Laboratory, Rome, NY, USA","institution_ids":["https://openalex.org/I1280414376"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5064773194","display_name":"Vladimir Rykov","orcid":"https://orcid.org/0000-0002-2331-0138"},"institutions":[{"id":"https://openalex.org/I122266389","display_name":"University of Nebraska at Omaha","ror":"https://ror.org/04yrkc140","country_code":"US","type":"education","lineage":["https://openalex.org/I122266389"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"V. Rykov","raw_affiliation_strings":["Department of Mathematics, University of Nebraska, Omaha, NE, USA"],"affiliations":[{"raw_affiliation_string":"Department of Mathematics, University of Nebraska, Omaha, NE, USA","institution_ids":["https://openalex.org/I122266389"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5044988387"],"corresponding_institution_ids":["https://openalex.org/I19880235"],"apc_list":null,"apc_paid":null,"fwci":0.2703,"has_fulltext":false,"cited_by_count":3,"citation_normalized_percentile":{"value":0.60478287,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"41","issue":null,"first_page":"1325","last_page":"1329"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12029","display_name":"DNA and Biological Computing","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12029","display_name":"DNA and Biological Computing","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10207","display_name":"Advanced biosensing and bioanalysis techniques","score":0.992900013923645,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9918000102043152,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.48077601194381714},{"id":"https://openalex.org/keywords/similarity","display_name":"Similarity (geometry)","score":0.47997331619262695},{"id":"https://openalex.org/keywords/dna","display_name":"DNA","score":0.44037148356437683},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3488351106643677},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.34772658348083496},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.24102240800857544},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.22491827607154846},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.19891822338104248}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.48077601194381714},{"id":"https://openalex.org/C103278499","wikidata":"https://www.wikidata.org/wiki/Q254465","display_name":"Similarity (geometry)","level":3,"score":0.47997331619262695},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.44037148356437683},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3488351106643677},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.34772658348083496},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.24102240800857544},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.22491827607154846},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.19891822338104248},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1109/isit.2010.5513751","is_oa":false,"landing_page_url":"https://doi.org/10.1109/isit.2010.5513751","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2010 IEEE International Symposium on Information Theory","raw_type":"proceedings-article"},{"id":"pmh:oai:arXiv.org:1001.1278","is_oa":true,"landing_page_url":"http://arxiv.org/abs/1001.1278","pdf_url":"https://arxiv.org/pdf/1001.1278","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},{"id":"pmh:oai:digitalcommons.unl.edu:usafresearch-1096","is_oa":false,"landing_page_url":"https://digitalcommons.unl.edu/usafresearch/98","pdf_url":null,"source":{"id":"https://openalex.org/S4306400577","display_name":"Lincoln (University of Nebraska)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I114395901","host_organization_name":"University of Nebraska\u2013Lincoln","host_organization_lineage":["https://openalex.org/I114395901"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"U.S. Air Force Research","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.755.4822","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.755.4822","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://arxiv.org/pdf/1001.1278.pdf","raw_type":"text"}],"best_oa_location":{"id":"pmh:oai:arXiv.org:1001.1278","is_oa":true,"landing_page_url":"http://arxiv.org/abs/1001.1278","pdf_url":"https://arxiv.org/pdf/1001.1278","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":18,"referenced_works":["https://openalex.org/W1519185585","https://openalex.org/W1606480398","https://openalex.org/W1964440534","https://openalex.org/W1964876021","https://openalex.org/W1969151232","https://openalex.org/W1981668228","https://openalex.org/W1994678824","https://openalex.org/W2025803580","https://openalex.org/W2059120410","https://openalex.org/W2074993099","https://openalex.org/W2080033904","https://openalex.org/W2104862809","https://openalex.org/W2112333437","https://openalex.org/W2130148978","https://openalex.org/W2131109459","https://openalex.org/W2135995702","https://openalex.org/W2162495423","https://openalex.org/W2572490927"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W4391375266","https://openalex.org/W1979597421","https://openalex.org/W2007980826","https://openalex.org/W2061531152","https://openalex.org/W3002753104","https://openalex.org/W2077600819","https://openalex.org/W2142036596","https://openalex.org/W2072657027","https://openalex.org/W2600246793"],"abstract_inverted_index":{"We":[0],"consider":[1],"DNA":[2,19,34,73],"codes":[3,35],"based":[4],"on":[5,30],"the":[6,14,31,61],"nearest-neighbor":[7],"(stem)":[8],"similarity":[9,42],"model":[10],"which":[11],"adequately":[12],"reflects":[13],"\u201chybridization":[15],"potential\u201d":[16],"of":[17,28,33,60],"two":[18],"sequences.":[20],"Our":[21],"aim":[22],"is":[23],"to":[24,38,54,67],"present":[25],"a":[26,39,52],"survey":[27],"bounds":[29],"rate":[32],"with":[36],"respect":[37],"thermodynamically":[40],"motivated":[41],"measure":[43],"called":[44],"an":[45],"additive":[46],"stem":[47],"similarity.":[48],"These":[49],"results":[50],"yield":[51],"method":[53],"analyze":[55],"and":[56],"compare":[57],"known":[58],"samples":[59],"nearest":[62],"neighbor":[63],"\u201cthermo-dynamic":[64],"weights\u201d":[65],"associated":[66],"stacked":[68],"pairs":[69],"that":[70],"occurred":[71],"in":[72],"secondary":[74],"structures.":[75]},"counts_by_year":[{"year":2013,"cited_by_count":1}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
