{"id":"https://openalex.org/W2042991964","doi":"https://doi.org/10.1109/isi.2013.6578853","title":"A generalized bio-inspired method for discovering sequence-based signatures","display_name":"A generalized bio-inspired method for discovering sequence-based signatures","publication_year":2013,"publication_date":"2013-06-01","ids":{"openalex":"https://openalex.org/W2042991964","doi":"https://doi.org/10.1109/isi.2013.6578853","mag":"2042991964"},"language":"en","primary_location":{"id":"doi:10.1109/isi.2013.6578853","is_oa":false,"landing_page_url":"https://doi.org/10.1109/isi.2013.6578853","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2013 IEEE International Conference on Intelligence and Security Informatics","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5040788704","display_name":"Elena Peterson","orcid":null},"institutions":[{"id":"https://openalex.org/I142606810","display_name":"Pacific Northwest National Laboratory","ror":"https://ror.org/05h992307","country_code":"US","type":"facility","lineage":["https://openalex.org/I1325736334","https://openalex.org/I1330989302","https://openalex.org/I142606810","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Elena Peterson","raw_affiliation_strings":["Pacific Northwest National Laboratory, Richland, WA, USA","Pacific Northwest National Laboratories Richland WA USA"],"affiliations":[{"raw_affiliation_string":"Pacific Northwest National Laboratory, Richland, WA, USA","institution_ids":["https://openalex.org/I142606810"]},{"raw_affiliation_string":"Pacific Northwest National Laboratories Richland WA USA","institution_ids":["https://openalex.org/I142606810"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080579772","display_name":"Darren Curtis","orcid":"https://orcid.org/0000-0002-4907-4575"},"institutions":[{"id":"https://openalex.org/I142606810","display_name":"Pacific Northwest National Laboratory","ror":"https://ror.org/05h992307","country_code":"US","type":"facility","lineage":["https://openalex.org/I1325736334","https://openalex.org/I1330989302","https://openalex.org/I142606810","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Darren Curtis","raw_affiliation_strings":["Pacific Northwest National Laboratory, Richland, WA, USA","Pacific Northwest National Laboratories Richland WA USA"],"affiliations":[{"raw_affiliation_string":"Pacific Northwest National Laboratory, Richland, WA, USA","institution_ids":["https://openalex.org/I142606810"]},{"raw_affiliation_string":"Pacific Northwest National Laboratories Richland WA USA","institution_ids":["https://openalex.org/I142606810"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029340820","display_name":"Aaron Phillips","orcid":null},"institutions":[{"id":"https://openalex.org/I142606810","display_name":"Pacific Northwest National Laboratory","ror":"https://ror.org/05h992307","country_code":"US","type":"facility","lineage":["https://openalex.org/I1325736334","https://openalex.org/I1330989302","https://openalex.org/I142606810","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Aaron Phillips","raw_affiliation_strings":["Pacific Northwest National Laboratory, Richland, WA, USA","Pacific Northwest National Laboratories Richland WA USA"],"affiliations":[{"raw_affiliation_string":"Pacific Northwest National Laboratory, Richland, WA, USA","institution_ids":["https://openalex.org/I142606810"]},{"raw_affiliation_string":"Pacific Northwest National Laboratories Richland WA USA","institution_ids":["https://openalex.org/I142606810"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036454888","display_name":"Jeremy Teuton","orcid":"https://orcid.org/0000-0002-7703-8870"},"institutions":[{"id":"https://openalex.org/I142606810","display_name":"Pacific Northwest National Laboratory","ror":"https://ror.org/05h992307","country_code":"US","type":"facility","lineage":["https://openalex.org/I1325736334","https://openalex.org/I1330989302","https://openalex.org/I142606810","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jeremy Teuton","raw_affiliation_strings":["Pacific Northwest National Laboratory, Richland, WA, USA","Pacific Northwest National Laboratories Richland WA USA"],"affiliations":[{"raw_affiliation_string":"Pacific Northwest National Laboratory, Richland, WA, USA","institution_ids":["https://openalex.org/I142606810"]},{"raw_affiliation_string":"Pacific Northwest National Laboratories Richland WA USA","institution_ids":["https://openalex.org/I142606810"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5013287908","display_name":"Christopher Oehmen","orcid":"https://orcid.org/0009-0004-5246-930X"},"institutions":[{"id":"https://openalex.org/I142606810","display_name":"Pacific Northwest National Laboratory","ror":"https://ror.org/05h992307","country_code":"US","type":"facility","lineage":["https://openalex.org/I1325736334","https://openalex.org/I1330989302","https://openalex.org/I142606810","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Christopher Oehmen","raw_affiliation_strings":["Pacific Northwest National Laboratory, Richland, WA, USA","Pacific Northwest National Laboratories Richland WA USA"],"affiliations":[{"raw_affiliation_string":"Pacific Northwest National Laboratory, Richland, WA, USA","institution_ids":["https://openalex.org/I142606810"]},{"raw_affiliation_string":"Pacific Northwest National Laboratories Richland WA USA","institution_ids":["https://openalex.org/I142606810"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5040788704"],"corresponding_institution_ids":["https://openalex.org/I142606810"],"apc_list":null,"apc_paid":null,"fwci":0.9618,"has_fulltext":false,"cited_by_count":3,"citation_normalized_percentile":{"value":0.81964844,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":null,"issue":null,"first_page":"330","last_page":"332"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9955000281333923,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12029","display_name":"DNA and Biological Computing","score":0.9943000078201294,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7450805902481079},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.7014546990394592},{"id":"https://openalex.org/keywords/rotation-formalisms-in-three-dimensions","display_name":"Rotation formalisms in three dimensions","score":0.6852332353591919},{"id":"https://openalex.org/keywords/event","display_name":"Event (particle physics)","score":0.6286841630935669},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.6140091419219971},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.5209868550300598},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.5005161762237549},{"id":"https://openalex.org/keywords/variety","display_name":"Variety (cybernetics)","score":0.43495017290115356},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.3912090063095093},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.37201738357543945},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.34531092643737793},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.1501549482345581}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7450805902481079},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.7014546990394592},{"id":"https://openalex.org/C171018156","wikidata":"https://www.wikidata.org/wiki/Q7370306","display_name":"Rotation formalisms in three dimensions","level":2,"score":0.6852332353591919},{"id":"https://openalex.org/C2779662365","wikidata":"https://www.wikidata.org/wiki/Q5416694","display_name":"Event (particle physics)","level":2,"score":0.6286841630935669},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.6140091419219971},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.5209868550300598},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.5005161762237549},{"id":"https://openalex.org/C136197465","wikidata":"https://www.wikidata.org/wiki/Q1729295","display_name":"Variety (cybernetics)","level":2,"score":0.43495017290115356},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.3912090063095093},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.37201738357543945},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.34531092643737793},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.1501549482345581},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/isi.2013.6578853","is_oa":false,"landing_page_url":"https://doi.org/10.1109/isi.2013.6578853","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2013 IEEE International Conference on Intelligence and Security Informatics","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Peace, Justice and strong institutions","id":"https://metadata.un.org/sdg/16","score":0.6899999976158142}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":8,"referenced_works":["https://openalex.org/W1973862547","https://openalex.org/W2018274021","https://openalex.org/W2042378654","https://openalex.org/W2049349724","https://openalex.org/W2051916497","https://openalex.org/W2055043387","https://openalex.org/W2091665271","https://openalex.org/W4236236547"],"related_works":["https://openalex.org/W57206970","https://openalex.org/W3196191855","https://openalex.org/W1950785758","https://openalex.org/W2498253392","https://openalex.org/W4235091896","https://openalex.org/W2023896637","https://openalex.org/W2185981755","https://openalex.org/W1539846681","https://openalex.org/W176020069","https://openalex.org/W2089263635"],"abstract_inverted_index":{"Many":[0],"phenomena":[1,23,72,103],"that":[2,34,104,176],"we":[3,116,202],"wish":[4],"to":[5,20,37,39,69,183],"discover":[6],"are":[7,18,35,105],"comprised":[8],"of":[9,11,29,49,52,60,110,142,172,180,190,216],"sequences":[10,109],"events":[12],"or":[13,27,31,91],"event":[14,111],"primitives.":[15,112],"Often":[16],"signatures":[17,101,185,205],"constructed":[19],"identify":[21,70],"such":[22],"using":[24,66,207,213],"either":[25],"distributions":[26],"frequencies":[28],"attributes,":[30],"specific":[32,67,76],"subsequences":[33,68],"known":[36],"correlate":[38],"the":[40,47,50,63,87,118,178],"phenomena.":[41],"Distribution-based":[42],"identification":[43],"does":[44],"not":[45],"capture":[46],"essence":[48],"sequence":[51,127,158],"behaviors":[53],"and":[54,77,121,138,152,199],"therefore":[55],"may":[56],"suffer":[57],"from":[58,79],"lack":[59],"specificity.":[61],"At":[62],"other":[64],"extreme,":[65],"target":[71],"is":[73],"often":[74],"too":[75],"suffers":[78],"lower":[80],"sensitivity":[81],"when":[82],"natural":[83],"variations":[84],"arise":[85],"in":[86,124,157,186],"phenomena,":[88],"measuring":[89],"process,":[90],"data":[92,159],"analysis.":[93],"We":[94,167],"introduce":[95],"here":[96],"a":[97,126,146,187,214],"method":[98,182,209],"for":[99,102,131,149],"discovering":[100,153,184],"well":[106],"characterized":[107],"by":[108,160],"In":[113],"this":[114,181,208],"paper,":[115],"describe":[117],"steps":[119],"taken":[120],"lessons":[122],"learned":[123],"generalizing":[125],"analysis":[128],"method,":[129],"BLAST,":[130],"use":[132],"on":[133,140],"non-biological":[134],"datasets":[135],"including":[136,192],"expressing":[137],"operating":[139],"alphabets":[141],"varying":[143],"length,":[144],"constructing":[145],"reward/penalty":[147],"model":[148,217],"arbitrary":[150],"datasets,":[151],"low":[154],"complexity":[155],"segments":[156],"extending":[161],"BLAST's":[162],"native":[163],"low-complexity":[164],"estimating":[165],"algorithms.":[166],"also":[168],"present":[169],"high-level":[170],"overviews":[171],"several":[173],"case":[174],"studies":[175],"demonstrate":[177,203],"utility":[179],"wide":[188],"array":[189],"applications":[191],"network":[193],"traffic,":[194],"software":[195],"analysis,":[196],"server":[197],"characterization,":[198],"others.":[200],"Finally,":[201],"how":[204],"discovered":[206],"can":[210],"be":[211],"expressed":[212],"variety":[215],"formalisms,":[218],"each":[219],"having":[220],"its":[221],"own":[222],"relative":[223],"benefit.":[224]},"counts_by_year":[{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2013,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
