{"id":"https://openalex.org/W2040385317","doi":"https://doi.org/10.1109/isda.2011.6121804","title":"Inferring gene coexpression networks with Biclustering based on Scatter Search","display_name":"Inferring gene coexpression networks with Biclustering based on Scatter Search","publication_year":2011,"publication_date":"2011-11-01","ids":{"openalex":"https://openalex.org/W2040385317","doi":"https://doi.org/10.1109/isda.2011.6121804","mag":"2040385317"},"language":"en","primary_location":{"id":"doi:10.1109/isda.2011.6121804","is_oa":false,"landing_page_url":"https://doi.org/10.1109/isda.2011.6121804","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2011 11th International Conference on Intelligent Systems Design and Applications","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://idus.us.es/handle//11441/133787","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5042668863","display_name":"Juan A. Nepomuceno","orcid":"https://orcid.org/0000-0003-2851-951X"},"institutions":[{"id":"https://openalex.org/I79238269","display_name":"Universidad de Sevilla","ror":"https://ror.org/03yxnpp24","country_code":"ES","type":"education","lineage":["https://openalex.org/I79238269"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Juan A. Nepomuceno","raw_affiliation_strings":["Department Lenguajes y Sistemas Inform\u00e1ticos, University of Seville, Spain","Dpt. Lenguajes y Sistemas Inform\u00e1ticos, University of Seville, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department Lenguajes y Sistemas Inform\u00e1ticos, University of Seville, Spain","institution_ids":["https://openalex.org/I79238269"]},{"raw_affiliation_string":"Dpt. Lenguajes y Sistemas Inform\u00e1ticos, University of Seville, Spain","institution_ids":["https://openalex.org/I79238269"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007453127","display_name":"Alicia Troncoso","orcid":"https://orcid.org/0000-0002-9801-7999"},"institutions":[{"id":"https://openalex.org/I95013407","display_name":"Universidad Pablo de Olavide","ror":"https://ror.org/02z749649","country_code":"ES","type":"education","lineage":["https://openalex.org/I95013407"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Alicia Troncoso","raw_affiliation_strings":["Area of Computer Science, Pablo de Olavide University, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Area of Computer Science, Pablo de Olavide University, Spain","institution_ids":["https://openalex.org/I95013407"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5049817649","display_name":"Jes\u00fas S. Aguilar\u2013Ruiz","orcid":"https://orcid.org/0000-0002-2666-293X"},"institutions":[{"id":"https://openalex.org/I95013407","display_name":"Universidad Pablo de Olavide","ror":"https://ror.org/02z749649","country_code":"ES","type":"education","lineage":["https://openalex.org/I95013407"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Jesus S. Aguilar-Ruiz","raw_affiliation_strings":["Area of Computer Science, Pablo de Olavide University, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Area of Computer Science, Pablo de Olavide University, Spain","institution_ids":["https://openalex.org/I95013407"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.09657355,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"8","issue":null,"first_page":"1091","last_page":"1096"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9977999925613403,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.996999979019165,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biclustering","display_name":"Biclustering","score":0.9035146236419678},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6937572956085205},{"id":"https://openalex.org/keywords/schema","display_name":"Schema (genetic algorithms)","score":0.5694280862808228},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.5375231504440308},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4649077355861664},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.46083834767341614},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.41663995385169983},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.38457533717155457},{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.359732449054718},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.12179464101791382}],"concepts":[{"id":"https://openalex.org/C144817290","wikidata":"https://www.wikidata.org/wiki/Q2976575","display_name":"Biclustering","level":5,"score":0.9035146236419678},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6937572956085205},{"id":"https://openalex.org/C52146309","wikidata":"https://www.wikidata.org/wiki/Q7431116","display_name":"Schema (genetic algorithms)","level":2,"score":0.5694280862808228},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.5375231504440308},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4649077355861664},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.46083834767341614},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.41663995385169983},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.38457533717155457},{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.359732449054718},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.12179464101791382},{"id":"https://openalex.org/C94641424","wikidata":"https://www.wikidata.org/wiki/Q5172845","display_name":"Correlation clustering","level":3,"score":0.0},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C33704608","wikidata":"https://www.wikidata.org/wiki/Q5014717","display_name":"CURE data clustering algorithm","level":4,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1109/isda.2011.6121804","is_oa":false,"landing_page_url":"https://doi.org/10.1109/isda.2011.6121804","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2011 11th International Conference on Intelligent Systems Design and Applications","raw_type":"proceedings-article"},{"id":"pmh:oai:idus.us.es:11441/133787","is_oa":true,"landing_page_url":"https://idus.us.es/handle//11441/133787","pdf_url":null,"source":{"id":"https://openalex.org/S4306401665","display_name":"Deposito de Investigacion Universidad de Sevilla (University of Seville)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I79238269","host_organization_name":"Universidad de Sevilla","host_organization_lineage":["https://openalex.org/I79238269"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/conferenceObject"}],"best_oa_location":{"id":"pmh:oai:idus.us.es:11441/133787","is_oa":true,"landing_page_url":"https://idus.us.es/handle//11441/133787","pdf_url":null,"source":{"id":"https://openalex.org/S4306401665","display_name":"Deposito de Investigacion Universidad de Sevilla (University of Seville)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I79238269","host_organization_name":"Universidad de Sevilla","host_organization_lineage":["https://openalex.org/I79238269"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/conferenceObject"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":11,"referenced_works":["https://openalex.org/W1493217831","https://openalex.org/W2005737301","https://openalex.org/W2030455922","https://openalex.org/W2055037769","https://openalex.org/W2059736685","https://openalex.org/W2090257125","https://openalex.org/W2097289046","https://openalex.org/W2124235814","https://openalex.org/W2144544802","https://openalex.org/W4210297234","https://openalex.org/W6629329278"],"related_works":["https://openalex.org/W1974340769","https://openalex.org/W2900595096","https://openalex.org/W4289277241","https://openalex.org/W2979322793","https://openalex.org/W2765801824","https://openalex.org/W2188068678","https://openalex.org/W2157302779","https://openalex.org/W4236723217","https://openalex.org/W2611629964","https://openalex.org/W2113284213"],"abstract_inverted_index":{"The":[0],"identification":[1],"of":[2,7,72,96,98,109],"regulatory":[3],"modules":[4],"is":[5],"one":[6,97],"the":[8,37,70,73,99],"most":[9],"important":[10],"tasks":[11],"in":[12,31],"order":[13],"to":[14,23,56],"discover":[15],"disease":[16],"markers.":[17],"This":[18],"paper":[19],"presents":[20],"a":[21,47,52,61,93,106],"methodology":[22],"infer":[24],"coexpression":[25],"networks":[26,101],"based":[27,65],"on":[28,66],"local":[29],"patterns":[30],"gene":[32],"expression":[33],"data":[34],"matrix.":[35],"In":[36],"proposed":[38],"algorithm":[39],"two":[40],"steps":[41],"can":[42],"clearly":[43],"be":[44],"differentiated.":[45],"Firstly,":[46],"Biclustering":[48],"procedure":[49,64],"that":[50],"uses":[51],"Scatter":[53],"Search":[54],"schema":[55],"find":[57],"biclusters":[58],"and,":[59],"secondly,":[60],"network":[62],"extraction":[63],"linear":[67],"correlations":[68],"among":[69],"genes":[71],"previously":[74],"obtained":[75,100],"bicluster.":[76],"Experimental":[77],"results":[78],"from":[79,105],"Yeast":[80],"cell":[81],"Cycle":[82],"are":[83],"reported":[84],"where":[85],"three":[86],"different":[87],"algorithms":[88],"have":[89],"been":[90,103],"applied.":[91],"Also,":[92],"possible":[94],"understanding":[95],"has":[102],"presented":[104],"biological":[107],"point":[108],"view.":[110]},"counts_by_year":[],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
