{"id":"https://openalex.org/W2099091641","doi":"https://doi.org/10.1109/iscis.2009.5291899","title":"Prediction of protein-protein interactions in yeast using SVMs with genomics/proteomics information and feature selection","display_name":"Prediction of protein-protein interactions in yeast using SVMs with genomics/proteomics information and feature selection","publication_year":2009,"publication_date":"2009-09-01","ids":{"openalex":"https://openalex.org/W2099091641","doi":"https://doi.org/10.1109/iscis.2009.5291899","mag":"2099091641"},"language":"en","primary_location":{"id":"doi:10.1109/iscis.2009.5291899","is_oa":false,"landing_page_url":"https://doi.org/10.1109/iscis.2009.5291899","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2009 24th International Symposium on Computer and Information Sciences","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5068042887","display_name":"Jos\u00e9 Urquiza","orcid":"https://orcid.org/0000-0003-2220-607X"},"institutions":[{"id":"https://openalex.org/I173304897","display_name":"Universidad de Granada","ror":"https://ror.org/04njjy449","country_code":"ES","type":"education","lineage":["https://openalex.org/I173304897"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"J.M. Urquiza","raw_affiliation_strings":["Department of Computer Architecture and Computer Technology, University of Granada, Granada, Spain","Department of Computer Architecture and Computer Technology, University of Granada, 18017 Granada, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Architecture and Computer Technology, University of Granada, Granada, Spain","institution_ids":["https://openalex.org/I173304897"]},{"raw_affiliation_string":"Department of Computer Architecture and Computer Technology, University of Granada, 18017 Granada, Spain","institution_ids":["https://openalex.org/I173304897"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089029287","display_name":"Ignacio Rojas","orcid":"https://orcid.org/0000-0002-1033-5635"},"institutions":[{"id":"https://openalex.org/I173304897","display_name":"Universidad de Granada","ror":"https://ror.org/04njjy449","country_code":"ES","type":"education","lineage":["https://openalex.org/I173304897"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"I. Rojas","raw_affiliation_strings":["Department of Computer Architecture and Computer Technology, University of Granada, Granada, Spain","Department of Computer Architecture and Computer Technology, University of Granada, 18017 Granada, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Architecture and Computer Technology, University of Granada, Granada, Spain","institution_ids":["https://openalex.org/I173304897"]},{"raw_affiliation_string":"Department of Computer Architecture and Computer Technology, University of Granada, 18017 Granada, Spain","institution_ids":["https://openalex.org/I173304897"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039951150","display_name":"H. Pomares","orcid":"https://orcid.org/0000-0002-8528-828X"},"institutions":[{"id":"https://openalex.org/I173304897","display_name":"Universidad de Granada","ror":"https://ror.org/04njjy449","country_code":"ES","type":"education","lineage":["https://openalex.org/I173304897"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"H. Pomares","raw_affiliation_strings":["Department of Computer Architecture and Computer Technology, University of Granada, Granada, Spain","Department of Computer Architecture and Computer Technology, University of Granada, 18017 Granada, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Architecture and Computer Technology, University of Granada, Granada, Spain","institution_ids":["https://openalex.org/I173304897"]},{"raw_affiliation_string":"Department of Computer Architecture and Computer Technology, University of Granada, 18017 Granada, Spain","institution_ids":["https://openalex.org/I173304897"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059976520","display_name":"Luis Javier Herrera","orcid":"https://orcid.org/0000-0003-3220-9389"},"institutions":[{"id":"https://openalex.org/I173304897","display_name":"Universidad de Granada","ror":"https://ror.org/04njjy449","country_code":"ES","type":"education","lineage":["https://openalex.org/I173304897"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"L. J. Herrera","raw_affiliation_strings":["Department of Computer Architecture and Computer Technology, University of Granada, Granada, Spain","Department of Computer Architecture and Computer Technology, University of Granada, 18017 Granada, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Architecture and Computer Technology, University of Granada, Granada, Spain","institution_ids":["https://openalex.org/I173304897"]},{"raw_affiliation_string":"Department of Computer Architecture and Computer Technology, University of Granada, 18017 Granada, Spain","institution_ids":["https://openalex.org/I173304897"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076724614","display_name":"G. Rubio","orcid":null},"institutions":[{"id":"https://openalex.org/I173304897","display_name":"Universidad de Granada","ror":"https://ror.org/04njjy449","country_code":"ES","type":"education","lineage":["https://openalex.org/I173304897"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"G. Rubio","raw_affiliation_strings":["Department of Computer Architecture and Computer Technology, University of Granada, Granada, Spain","Department of Computer Architecture and Computer Technology, University of Granada, 18017 Granada, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Architecture and Computer Technology, University of Granada, Granada, Spain","institution_ids":["https://openalex.org/I173304897"]},{"raw_affiliation_string":"Department of Computer Architecture and Computer Technology, University of Granada, 18017 Granada, Spain","institution_ids":["https://openalex.org/I173304897"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5055657693","display_name":"Javier P\u00e9rez-Florido","orcid":"https://orcid.org/0000-0002-0223-9889"},"institutions":[{"id":"https://openalex.org/I173304897","display_name":"Universidad de Granada","ror":"https://ror.org/04njjy449","country_code":"ES","type":"education","lineage":["https://openalex.org/I173304897"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"J.P. Florido","raw_affiliation_strings":["Department of Computer Architecture and Computer Technology, University of Granada, Granada, Spain","Department of Computer Architecture and Computer Technology, University of Granada, 18017 Granada, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Architecture and Computer Technology, University of Granada, Granada, Spain","institution_ids":["https://openalex.org/I173304897"]},{"raw_affiliation_string":"Department of Computer Architecture and Computer Technology, University of Granada, 18017 Granada, Spain","institution_ids":["https://openalex.org/I173304897"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I173304897"],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":"6","issue":null,"first_page":"645","last_page":"650"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9944000244140625,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9797999858856201,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/support-vector-machine","display_name":"Support vector machine","score":0.7697301506996155},{"id":"https://openalex.org/keywords/feature-selection","display_name":"Feature selection","score":0.7329227924346924},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6953840851783752},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5529916882514954},{"id":"https://openalex.org/keywords/proteomics","display_name":"Proteomics","score":0.5487256646156311},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.517583966255188},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.5073110461235046},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.500025749206543},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.47701478004455566},{"id":"https://openalex.org/keywords/selection","display_name":"Selection (genetic algorithm)","score":0.4673512279987335},{"id":"https://openalex.org/keywords/structural-genomics","display_name":"Structural genomics","score":0.4672042727470398},{"id":"https://openalex.org/keywords/similarity","display_name":"Similarity (geometry)","score":0.44803521037101746},{"id":"https://openalex.org/keywords/feature","display_name":"Feature (linguistics)","score":0.4443575441837311},{"id":"https://openalex.org/keywords/construct","display_name":"Construct (python library)","score":0.41140297055244446},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.36629706621170044},{"id":"https://openalex.org/keywords/protein-structure","display_name":"Protein structure","score":0.14795559644699097},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.141179621219635},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.09644964337348938},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.07016658782958984}],"concepts":[{"id":"https://openalex.org/C12267149","wikidata":"https://www.wikidata.org/wiki/Q282453","display_name":"Support vector machine","level":2,"score":0.7697301506996155},{"id":"https://openalex.org/C148483581","wikidata":"https://www.wikidata.org/wiki/Q446488","display_name":"Feature selection","level":2,"score":0.7329227924346924},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6953840851783752},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5529916882514954},{"id":"https://openalex.org/C46111723","wikidata":"https://www.wikidata.org/wiki/Q471857","display_name":"Proteomics","level":3,"score":0.5487256646156311},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.517583966255188},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.5073110461235046},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.500025749206543},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.47701478004455566},{"id":"https://openalex.org/C81917197","wikidata":"https://www.wikidata.org/wiki/Q628760","display_name":"Selection (genetic algorithm)","level":2,"score":0.4673512279987335},{"id":"https://openalex.org/C192772702","wikidata":"https://www.wikidata.org/wiki/Q2583975","display_name":"Structural genomics","level":3,"score":0.4672042727470398},{"id":"https://openalex.org/C103278499","wikidata":"https://www.wikidata.org/wiki/Q254465","display_name":"Similarity (geometry)","level":3,"score":0.44803521037101746},{"id":"https://openalex.org/C2776401178","wikidata":"https://www.wikidata.org/wiki/Q12050496","display_name":"Feature (linguistics)","level":2,"score":0.4443575441837311},{"id":"https://openalex.org/C2780801425","wikidata":"https://www.wikidata.org/wiki/Q5164392","display_name":"Construct (python library)","level":2,"score":0.41140297055244446},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.36629706621170044},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.14795559644699097},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.141179621219635},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.09644964337348938},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.07016658782958984},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/iscis.2009.5291899","is_oa":false,"landing_page_url":"https://doi.org/10.1109/iscis.2009.5291899","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2009 24th International Symposium on Computer and Information Sciences","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320326754","display_name":"Junta de Andaluc\u00eda","ror":"https://ror.org/01jem9c82"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":49,"referenced_works":["https://openalex.org/W1496317909","https://openalex.org/W1499561015","https://openalex.org/W1513501940","https://openalex.org/W1527927437","https://openalex.org/W1543818869","https://openalex.org/W1583700199","https://openalex.org/W1755826643","https://openalex.org/W1918391659","https://openalex.org/W1967638691","https://openalex.org/W1988422871","https://openalex.org/W1989034333","https://openalex.org/W1990676771","https://openalex.org/W2015932775","https://openalex.org/W2037036397","https://openalex.org/W2045131140","https://openalex.org/W2065304353","https://openalex.org/W2067717190","https://openalex.org/W2079603968","https://openalex.org/W2079818352","https://openalex.org/W2080182143","https://openalex.org/W2084619201","https://openalex.org/W2098869926","https://openalex.org/W2099862356","https://openalex.org/W2104315543","https://openalex.org/W2108491719","https://openalex.org/W2108685639","https://openalex.org/W2109248504","https://openalex.org/W2111070301","https://openalex.org/W2113019448","https://openalex.org/W2113654464","https://openalex.org/W2119821739","https://openalex.org/W2130479394","https://openalex.org/W2132666556","https://openalex.org/W2133548874","https://openalex.org/W2137971060","https://openalex.org/W2145650689","https://openalex.org/W2148853951","https://openalex.org/W2149310258","https://openalex.org/W2153635508","https://openalex.org/W2157346087","https://openalex.org/W2158559404","https://openalex.org/W2167869241","https://openalex.org/W2169397265","https://openalex.org/W2171644697","https://openalex.org/W2172049947","https://openalex.org/W2522081501","https://openalex.org/W2733270300","https://openalex.org/W3120421331","https://openalex.org/W4239510810"],"related_works":["https://openalex.org/W2002288604","https://openalex.org/W2365466262","https://openalex.org/W1568513966","https://openalex.org/W2035381155","https://openalex.org/W1991893345","https://openalex.org/W1568205932","https://openalex.org/W2019972293","https://openalex.org/W2385787406","https://openalex.org/W2053972265","https://openalex.org/W2155148643"],"abstract_inverted_index":{"In":[0,24,62],"current":[1],"Proteomics":[2],"research,":[3],"prediction":[4,33,118,141,153],"of":[5,11,19,34,68,81,92,103,120,145,155],"protein-protein":[6,35],"interactions":[7,36],"(PPIs)":[8],"is":[9,41],"one":[10],"the":[12,20,25,44,117,140,152,156],"main":[13],"goals,":[14],"since":[15],"PPIs":[16],"explain":[17],"most":[18],"cellular":[21],"biological":[22],"processes.":[23],"present":[26],"work,":[27],"we":[28,75,129,148],"propose":[29],"a":[30,53,77,90,98,125,135],"method":[31,57,157],"for":[32,101,142],"in":[37,72,139],"yeast.":[38],"Our":[39],"proposal":[40],"based":[42],"on":[43],"well-known":[45,54,110],"classification":[46],"paradigm":[47],"called":[48],"support":[49],"vector":[50],"machines":[51],"and":[52,70,83,150],"feature":[55,126],"selection":[56,127],"(Relief)":[58],"using":[59],"genomics/proteomics":[60],"information.":[61],"order":[63],"to":[64,88,105,115],"obtain":[65,134],"higher":[66],"values":[67],"specificity":[69],"sensitivity":[71],"predicting":[73],"PPIs,":[74],"use":[76],"high":[78],"reliable":[79],"set":[80,91],"positive":[82],"negative":[84],"examples":[85],"from":[86,109,163],"which":[87],"extract":[89],"proteomic/genomic":[93],"features.":[94],"We":[95],"also":[96],"introduce":[97],"similarity":[99],"measure":[100],"pairs":[102],"proteins":[104],"calculate":[106],"additional":[107],"features":[108],"databases,":[111],"that":[112,133],"allow":[113],"us":[114],"improve":[116],"capability":[119],"our":[121],"approach.":[122],"After":[123],"applying":[124],"method,":[128],"construct":[130],"SVM":[131],"classifiers":[132],"low":[136],"error":[137],"rate":[138],"each":[143],"pair":[144],"proteins.":[146],"Finally,":[147],"analyse":[149],"compare":[151],"quality":[154],"proposed":[158],"with":[159],"other":[160,164],"high-confidence":[161],"datasets":[162],"works.":[165]},"counts_by_year":[],"updated_date":"2026-07-14T23:27:15.235271","created_date":"2025-10-10T00:00:00"}
