{"id":"https://openalex.org/W2137021482","doi":"https://doi.org/10.1109/iscis.2009.5291850","title":"Exploiting scientific workflows for large-scale gene expression data analysis","display_name":"Exploiting scientific workflows for large-scale gene expression data analysis","publication_year":2009,"publication_date":"2009-09-01","ids":{"openalex":"https://openalex.org/W2137021482","doi":"https://doi.org/10.1109/iscis.2009.5291850","mag":"2137021482"},"language":"en","primary_location":{"id":"doi:10.1109/iscis.2009.5291850","is_oa":false,"landing_page_url":"https://doi.org/10.1109/iscis.2009.5291850","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2009 24th International Symposium on Computer and Information Sciences","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5078961896","display_name":"Alessandro De Stasio","orcid":null},"institutions":[{"id":"https://openalex.org/I16337185","display_name":"University of Sannio","ror":"https://ror.org/04vc81p87","country_code":"IT","type":"education","lineage":["https://openalex.org/I16337185"]},{"id":"https://openalex.org/I4210087769","display_name":"Software AG (Italy)","ror":"https://ror.org/003jrsn97","country_code":"IT","type":"company","lineage":["https://openalex.org/I4210087769"]}],"countries":["IT"],"is_corresponding":true,"raw_author_name":"Alessandro De Stasio","raw_affiliation_strings":["Research Center on Software Technologies-RCOST, University of Sannio, Benevento, Italy","Unlimited Software S.r.l., Naples, Italy"],"affiliations":[{"raw_affiliation_string":"Research Center on Software Technologies-RCOST, University of Sannio, Benevento, Italy","institution_ids":["https://openalex.org/I16337185"]},{"raw_affiliation_string":"Unlimited Software S.r.l., Naples, Italy","institution_ids":["https://openalex.org/I4210087769"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5069211280","display_name":"Marcus Ertelt","orcid":null},"institutions":[{"id":"https://openalex.org/I39343248","display_name":"Humboldt-Universit\u00e4t zu Berlin","ror":"https://ror.org/01hcx6992","country_code":"DE","type":"education","lineage":["https://openalex.org/I39343248"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Marcus Ertelt","raw_affiliation_strings":["Humboldt-Universitaet zu Berlin, Germany","Humboldt-Universitat zu Berlin,Germany"],"affiliations":[{"raw_affiliation_string":"Humboldt-Universitaet zu Berlin, Germany","institution_ids":["https://openalex.org/I39343248"]},{"raw_affiliation_string":"Humboldt-Universitat zu Berlin,Germany","institution_ids":["https://openalex.org/I39343248"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036556843","display_name":"Wolfgang Kemmner","orcid":"https://orcid.org/0000-0002-1494-7225"},"institutions":[{"id":"https://openalex.org/I205582932","display_name":"Max Delbr\u00fcck Center","ror":"https://ror.org/04p5ggc03","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I205582932"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Wolfgang Kemmner","raw_affiliation_strings":["Max-Delbr\u00fcck-Centrum Berlin, Germany"],"affiliations":[{"raw_affiliation_string":"Max-Delbr\u00fcck-Centrum Berlin, Germany","institution_ids":["https://openalex.org/I205582932"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055236937","display_name":"Ulf Leser","orcid":"https://orcid.org/0000-0003-2166-9582"},"institutions":[{"id":"https://openalex.org/I39343248","display_name":"Humboldt-Universit\u00e4t zu Berlin","ror":"https://ror.org/01hcx6992","country_code":"DE","type":"education","lineage":["https://openalex.org/I39343248"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Ulf Leser","raw_affiliation_strings":["Humboldt-Universitaet zu Berlin, Germany","Humboldt-Universitat zu Berlin,Germany"],"affiliations":[{"raw_affiliation_string":"Humboldt-Universitaet zu Berlin, Germany","institution_ids":["https://openalex.org/I39343248"]},{"raw_affiliation_string":"Humboldt-Universitat zu Berlin,Germany","institution_ids":["https://openalex.org/I39343248"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5085527072","display_name":"Michele Ceccarelli","orcid":"https://orcid.org/0000-0002-4702-6617"},"institutions":[{"id":"https://openalex.org/I16337185","display_name":"University of Sannio","ror":"https://ror.org/04vc81p87","country_code":"IT","type":"education","lineage":["https://openalex.org/I16337185"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Michele Ceccarelli","raw_affiliation_strings":["Research Center on Software Technologies-RCOST, University of Sannio, Benevento, Italy"],"affiliations":[{"raw_affiliation_string":"Research Center on Software Technologies-RCOST, University of Sannio, Benevento, Italy","institution_ids":["https://openalex.org/I16337185"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5078961896"],"corresponding_institution_ids":["https://openalex.org/I16337185","https://openalex.org/I4210087769"],"apc_list":null,"apc_paid":null,"fwci":0.721,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.83592769,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"35","issue":null,"first_page":"448","last_page":"453"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T10715","display_name":"Distributed and Parallel Computing Systems","score":0.9948999881744385,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9884999990463257,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.8243972063064575},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7354269623756409},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.64717698097229},{"id":"https://openalex.org/keywords/expression","display_name":"Expression (computer science)","score":0.538316547870636},{"id":"https://openalex.org/keywords/scale","display_name":"Scale (ratio)","score":0.48889389634132385},{"id":"https://openalex.org/keywords/enhanced-data-rates-for-gsm-evolution","display_name":"Enhanced Data Rates for GSM Evolution","score":0.4289223849773407},{"id":"https://openalex.org/keywords/architecture","display_name":"Architecture","score":0.425764262676239},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3265968859195709},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.16842788457870483},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.16459724307060242}],"concepts":[{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.8243972063064575},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7354269623756409},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.64717698097229},{"id":"https://openalex.org/C90559484","wikidata":"https://www.wikidata.org/wiki/Q778379","display_name":"Expression (computer science)","level":2,"score":0.538316547870636},{"id":"https://openalex.org/C2778755073","wikidata":"https://www.wikidata.org/wiki/Q10858537","display_name":"Scale (ratio)","level":2,"score":0.48889389634132385},{"id":"https://openalex.org/C162307627","wikidata":"https://www.wikidata.org/wiki/Q204833","display_name":"Enhanced Data Rates for GSM Evolution","level":2,"score":0.4289223849773407},{"id":"https://openalex.org/C123657996","wikidata":"https://www.wikidata.org/wiki/Q12271","display_name":"Architecture","level":2,"score":0.425764262676239},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3265968859195709},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.16842788457870483},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.16459724307060242},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C153349607","wikidata":"https://www.wikidata.org/wiki/Q36649","display_name":"Visual arts","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C142362112","wikidata":"https://www.wikidata.org/wiki/Q735","display_name":"Art","level":0,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1109/iscis.2009.5291850","is_oa":false,"landing_page_url":"https://doi.org/10.1109/iscis.2009.5291850","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2009 24th International Symposium on Computer and Information Sciences","raw_type":"proceedings-article"},{"id":"pmh:oai:edoc.mdc-berlin.de:15408","is_oa":false,"landing_page_url":"https://edoc.mdc-berlin.de/15408/","pdf_url":null,"source":{"id":"https://openalex.org/S4306400224","display_name":"MDC Repository (Max-Delbrueck-Center for Molecular Medicine)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I149899117","host_organization_name":"Max Planck Society","host_organization_lineage":["https://openalex.org/I149899117"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Conference or Workshop Item"}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.5899999737739563,"id":"https://metadata.un.org/sdg/9","display_name":"Industry, innovation and infrastructure"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":19,"referenced_works":["https://openalex.org/W205180317","https://openalex.org/W1569352169","https://openalex.org/W1754742998","https://openalex.org/W1970156673","https://openalex.org/W1983833794","https://openalex.org/W2064940205","https://openalex.org/W2102784281","https://openalex.org/W2121315650","https://openalex.org/W2135557996","https://openalex.org/W2143129697","https://openalex.org/W2149687233","https://openalex.org/W2154362705","https://openalex.org/W2154513453","https://openalex.org/W2160697532","https://openalex.org/W2168103533","https://openalex.org/W4237715662","https://openalex.org/W4285719527","https://openalex.org/W6608372704","https://openalex.org/W6680889923"],"related_works":["https://openalex.org/W1981780420","https://openalex.org/W2182707996","https://openalex.org/W45233828","https://openalex.org/W2964988449","https://openalex.org/W2397952901","https://openalex.org/W2029380707","https://openalex.org/W188202134","https://openalex.org/W4255934811","https://openalex.org/W2465382974","https://openalex.org/W2010229520"],"abstract_inverted_index":{"Microarrays":[0],"are":[1,25,63],"state":[2],"technologies":[3,96,109],"of":[4,10,12,14,22,32,37,43,51,70,107,158],"the":[5,8,35,67,105,111,122,144,156],"art":[6],"for":[7],"measurement":[9],"expression":[11,45,128,149],"thousands":[13],"genes":[15],"in":[16,73,97,147,152],"a":[17,29,77],"single":[18],"experiment.":[19],"The":[20,135],"treatment":[21],"these":[23,108],"data":[24,52,82,129,150],"typically":[26],"performed":[27],"with":[28,131],"wide":[30],"range":[31],"tools,":[33],"but":[34],"understanding":[36],"complex":[38],"biological":[39],"system":[40],"by":[41,93,110],"means":[42],"gene":[44,127,148],"usually":[46],"requires":[47],"integrating":[48],"different":[49,57],"types":[50],"from":[53],"multiple":[54],"sources":[55],"and":[56,59,83,142,162,164],"services":[58],"tools.":[60],"Many":[61],"efforts":[62],"being":[64],"developed":[65],"on":[66],"new":[68],"area":[69,99],"scientific":[71],"workflows":[72,87],"order":[74,153],"to":[75,85,124,140,154],"create":[76,86],"technology":[78],"that":[79,88,120],"links":[80],"both":[81],"tools":[84],"can":[89],"easily":[90],"be":[91],"used":[92],"researchers.":[94],"Currently":[95],"this":[98,114],"aren't":[100],"mature":[101],"yet,":[102],"making":[103],"arduous":[104],"use":[106],"researcher.":[112],"In":[113],"paper":[115],"we":[116],"present":[117],"an":[118],"architecture":[119],"helps":[121],"researchers":[123],"make":[125],"large-scale":[126],"analysis":[130],"cutting":[132],"edge":[133],"technologies.":[134],"main":[136],"underlying":[137],"idea":[138],"is":[139],"automate":[141],"rearrange":[143],"activities":[145],"involved":[146],"analysis,":[151],"freeing":[155],"user":[157],"superfluous":[159],"technological":[160],"details":[161],"tedious":[163],"error-prone":[165],"tasks.":[166]},"counts_by_year":[],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}