{"id":"https://openalex.org/W4410887806","doi":"https://doi.org/10.1109/iscbi64586.2025.11015359","title":"Automated Detection of Tiny 3D Signals in Tn5-Fluorescence in Situ Hybridization Using a Scale-Free Deep Learning Model","display_name":"Automated Detection of Tiny 3D Signals in Tn5-Fluorescence in Situ Hybridization Using a Scale-Free Deep Learning Model","publication_year":2025,"publication_date":"2025-02-14","ids":{"openalex":"https://openalex.org/W4410887806","doi":"https://doi.org/10.1109/iscbi64586.2025.11015359"},"language":"en","primary_location":{"id":"doi:10.1109/iscbi64586.2025.11015359","is_oa":false,"landing_page_url":"https://doi.org/10.1109/iscbi64586.2025.11015359","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2025 7th International Symposium on Computational and Business Intelligence (ISCBI)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5056464635","display_name":"Zhichao Yu","orcid":null},"institutions":[{"id":"https://openalex.org/I204512498","display_name":"University of Macau","ror":"https://ror.org/01r4q9n85","country_code":"MO","type":"education","lineage":["https://openalex.org/I204512498"]}],"countries":["MO"],"is_corresponding":true,"raw_author_name":"Zhichao Yu","raw_affiliation_strings":["University of Macau,Department of Computer and Information Science,Macau,China"],"affiliations":[{"raw_affiliation_string":"University of Macau,Department of Computer and Information Science,Macau,China","institution_ids":["https://openalex.org/I204512498"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028422293","display_name":"Jiahui Yu","orcid":"https://orcid.org/0009-0006-5112-4988"},"institutions":[{"id":"https://openalex.org/I204512498","display_name":"University of Macau","ror":"https://ror.org/01r4q9n85","country_code":"MO","type":"education","lineage":["https://openalex.org/I204512498"]}],"countries":["MO"],"is_corresponding":false,"raw_author_name":"Jiahui Yu","raw_affiliation_strings":["University of Macau,Department of Computer and Information Science,Macau,China"],"affiliations":[{"raw_affiliation_string":"University of Macau,Department of Computer and Information Science,Macau,China","institution_ids":["https://openalex.org/I204512498"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101075312","display_name":"Jinfeng Guo","orcid":null},"institutions":[{"id":"https://openalex.org/I204512498","display_name":"University of Macau","ror":"https://ror.org/01r4q9n85","country_code":"MO","type":"education","lineage":["https://openalex.org/I204512498"]}],"countries":["MO"],"is_corresponding":false,"raw_author_name":"Jinfeng Guo","raw_affiliation_strings":["University of Macau,Department of Computer and Information Science,Macau,China"],"affiliations":[{"raw_affiliation_string":"University of Macau,Department of Computer and Information Science,Macau,China","institution_ids":["https://openalex.org/I204512498"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086422507","display_name":"Simon Fong","orcid":"https://orcid.org/0000-0002-1848-7246"},"institutions":[{"id":"https://openalex.org/I204512498","display_name":"University of Macau","ror":"https://ror.org/01r4q9n85","country_code":"MO","type":"education","lineage":["https://openalex.org/I204512498"]}],"countries":["MO"],"is_corresponding":false,"raw_author_name":"Simon Fong","raw_affiliation_strings":["University of Macau,Department of Computer and Information Science,Macau,China"],"affiliations":[{"raw_affiliation_string":"University of Macau,Department of Computer and Information Science,Macau,China","institution_ids":["https://openalex.org/I204512498"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007279056","display_name":"Wei Luo","orcid":"https://orcid.org/0000-0002-7066-8837"},"institutions":[{"id":"https://openalex.org/I4210105740","display_name":"First People's Hospital of Foshan","ror":"https://ror.org/01cqwmh55","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210105740"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Wei Luo","raw_affiliation_strings":["The First People&#x2019;s Hospital of Foshan,Clinical Research Institute,Foshan,China"],"affiliations":[{"raw_affiliation_string":"The First People&#x2019;s Hospital of Foshan,Clinical Research Institute,Foshan,China","institution_ids":["https://openalex.org/I4210105740"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100717157","display_name":"Li Bao","orcid":"https://orcid.org/0000-0002-6436-1492"},"institutions":[{"id":"https://openalex.org/I2802957242","display_name":"Beijing Jishuitan Hospital","ror":"https://ror.org/035t17984","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I2802957242"]},{"id":"https://openalex.org/I20231570","display_name":"Peking University","ror":"https://ror.org/02v51f717","country_code":"CN","type":"education","lineage":["https://openalex.org/I20231570"]},{"id":"https://openalex.org/I183519381","display_name":"Capital Medical University","ror":"https://ror.org/013xs5b60","country_code":"CN","type":"education","lineage":["https://openalex.org/I183519381"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Li Bao","raw_affiliation_strings":["Capital Medical University,Beijing Jishuitan Hospital,Department Department of Haematology,Beijing,China"],"affiliations":[{"raw_affiliation_string":"Capital Medical University,Beijing Jishuitan Hospital,Department Department of Haematology,Beijing,China","institution_ids":["https://openalex.org/I2802957242","https://openalex.org/I183519381","https://openalex.org/I20231570"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021669154","display_name":"Bin Chu","orcid":"https://orcid.org/0009-0003-6526-4349"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Bin Chu","raw_affiliation_strings":["Jingjinji National Center of Technology Innovation,Beijing,China"],"affiliations":[{"raw_affiliation_string":"Jingjinji National Center of Technology Innovation,Beijing,China","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5102943651","display_name":"Juntao Gao","orcid":null},"institutions":[{"id":"https://openalex.org/I99065089","display_name":"Tsinghua University","ror":"https://ror.org/03cve4549","country_code":"CN","type":"education","lineage":["https://openalex.org/I99065089"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Juntao Gao","raw_affiliation_strings":["Tsinghua University,Tsinghua National Laboratory for Information Science and Technology,Beijing,China"],"affiliations":[{"raw_affiliation_string":"Tsinghua University,Tsinghua National Laboratory for Information Science and Technology,Beijing,China","institution_ids":["https://openalex.org/I99065089"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5056464635"],"corresponding_institution_ids":["https://openalex.org/I204512498"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.14496926,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"51","last_page":"55"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T14156","display_name":"Engineering Applied Research","score":0.6559000015258789,"subfield":{"id":"https://openalex.org/subfields/2205","display_name":"Civil and Structural Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T14156","display_name":"Engineering Applied Research","score":0.6559000015258789,"subfield":{"id":"https://openalex.org/subfields/2205","display_name":"Civil and Structural Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12422","display_name":"Radiomics and Machine Learning in Medical Imaging","score":0.5938000082969666,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/in-situ","display_name":"In situ","score":0.6070914268493652},{"id":"https://openalex.org/keywords/scale","display_name":"Scale (ratio)","score":0.5736417770385742},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5542421340942383},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5426852703094482},{"id":"https://openalex.org/keywords/fluorescence","display_name":"Fluorescence","score":0.5107932090759277},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.4279259145259857},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.1737225353717804},{"id":"https://openalex.org/keywords/optics","display_name":"Optics","score":0.13919740915298462},{"id":"https://openalex.org/keywords/geography","display_name":"Geography","score":0.08749958872795105},{"id":"https://openalex.org/keywords/cartography","display_name":"Cartography","score":0.08662307262420654}],"concepts":[{"id":"https://openalex.org/C2777822432","wikidata":"https://www.wikidata.org/wiki/Q216681","display_name":"In situ","level":2,"score":0.6070914268493652},{"id":"https://openalex.org/C2778755073","wikidata":"https://www.wikidata.org/wiki/Q10858537","display_name":"Scale (ratio)","level":2,"score":0.5736417770385742},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5542421340942383},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5426852703094482},{"id":"https://openalex.org/C91881484","wikidata":"https://www.wikidata.org/wiki/Q191807","display_name":"Fluorescence","level":2,"score":0.5107932090759277},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.4279259145259857},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.1737225353717804},{"id":"https://openalex.org/C120665830","wikidata":"https://www.wikidata.org/wiki/Q14620","display_name":"Optics","level":1,"score":0.13919740915298462},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.08749958872795105},{"id":"https://openalex.org/C58640448","wikidata":"https://www.wikidata.org/wiki/Q42515","display_name":"Cartography","level":1,"score":0.08662307262420654},{"id":"https://openalex.org/C153294291","wikidata":"https://www.wikidata.org/wiki/Q25261","display_name":"Meteorology","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/iscbi64586.2025.11015359","is_oa":false,"landing_page_url":"https://doi.org/10.1109/iscbi64586.2025.11015359","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2025 7th International Symposium on Computational and Business Intelligence (ISCBI)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320337495","display_name":"Technology Development","ror":null}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":17,"referenced_works":["https://openalex.org/W2003233718","https://openalex.org/W2105341274","https://openalex.org/W2435872371","https://openalex.org/W2769192984","https://openalex.org/W2922228277","https://openalex.org/W3022553019","https://openalex.org/W3026321854","https://openalex.org/W3097524491","https://openalex.org/W4256052369","https://openalex.org/W4366424383","https://openalex.org/W4380988676","https://openalex.org/W4389615466","https://openalex.org/W4392089963","https://openalex.org/W4398756379","https://openalex.org/W4402754006","https://openalex.org/W6680012891","https://openalex.org/W6868582632"],"related_works":["https://openalex.org/W2382309260","https://openalex.org/W2369913389","https://openalex.org/W1968431014","https://openalex.org/W2353900815","https://openalex.org/W2149482486","https://openalex.org/W2953913003","https://openalex.org/W2053588607","https://openalex.org/W2054865730","https://openalex.org/W2033914206","https://openalex.org/W2042327336"],"abstract_inverted_index":{"Fluorescence":[0],"In":[1],"Situ":[2],"Hybridization":[3],"(FISH)":[4],"imaging":[5],"plays":[6],"a":[7,23,46,53,73,81],"crucial":[8],"role":[9],"in":[10,26,40,125],"cellular":[11],"and":[12,37,72,88,104,118,128,137],"genetic":[13],"analysis,":[14],"but":[15],"identifying":[16],"useful":[17],"signals":[18,103],"amidst":[19],"complex":[20],"backgrounds":[21],"remains":[22],"challenging":[24],"task":[25],"manual":[27],"inspection.":[28],"The":[29,62],"process":[30],"is":[31],"often":[32],"labor-intensive,":[33],"prone":[34],"to":[35,57,85,92],"errors,":[36],"can":[38],"result":[39],"missed":[41],"signals.":[42],"This":[43],"study":[44],"introduces":[45],"Convolutional":[47],"Neural":[48],"Network":[49],"(CNN)":[50],"model":[51,63,113],"with":[52],"flexible,":[54],"adaptive":[55],"design":[56],"improve":[58],"FISH":[59,97,134],"signal":[60],"detection.":[61],"includes":[64],"an":[65],"Adaptive":[66],"Attention":[67],"Dynamic":[68],"Upsampling":[69],"Module":[70],"(AADUM)":[71],"Partial":[74],"Convolution":[75],"Block":[76],"(PCBlock)":[77],"that":[78],"allow":[79],"for":[80,132,142],"more":[82],"tailored":[83],"approach":[84],"feature":[86],"extraction":[87],"upsampling,":[89],"adjusting":[90],"according":[91],"the":[93,139],"content":[94],"of":[95],"each":[96],"image.":[98],"By":[99],"distinguishing":[100],"between":[101],"true":[102],"background":[105],"noise":[106],"without":[107],"requiring":[108],"extensive":[109],"image":[110,135],"preprocessing,":[111],"this":[112],"effectively":[114],"reduces":[115],"false":[116],"positives":[117],"negatives.":[119],"Experimental":[120],"results":[121],"demonstrate":[122],"notable":[123],"improvements":[124],"detection":[126],"accuracy":[127],"consistency,":[129],"showing":[130],"promise":[131],"automating":[133],"interpretation":[136],"alleviating":[138],"diagnostic":[140],"workload":[141],"human":[143],"inspectors.":[144]},"counts_by_year":[],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
