{"id":"https://openalex.org/W4384947597","doi":"https://doi.org/10.1109/iscas46773.2023.10181367","title":"Hardware Acceleration of DNA Pattern Matching with Binary Memristors","display_name":"Hardware Acceleration of DNA Pattern Matching with Binary Memristors","publication_year":2023,"publication_date":"2023-05-21","ids":{"openalex":"https://openalex.org/W4384947597","doi":"https://doi.org/10.1109/iscas46773.2023.10181367"},"language":"en","primary_location":{"id":"doi:10.1109/iscas46773.2023.10181367","is_oa":false,"landing_page_url":"https://doi.org/10.1109/iscas46773.2023.10181367","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2023 IEEE International Symposium on Circuits and Systems (ISCAS)","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5055436369","display_name":"Jinane Bazzi","orcid":"https://orcid.org/0000-0003-4007-0161"},"institutions":[{"id":"https://openalex.org/I71920554","display_name":"King Abdullah University of Science and Technology","ror":"https://ror.org/01q3tbs38","country_code":"SA","type":"education","lineage":["https://openalex.org/I71920554"]}],"countries":["SA"],"is_corresponding":false,"raw_author_name":"Jinane Bazzi","raw_affiliation_strings":["King Abdullah University of Science and Technology (KAUST),Thuwal,Saudi Arabia,23955"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"King Abdullah University of Science and Technology (KAUST),Thuwal,Saudi Arabia,23955","institution_ids":["https://openalex.org/I71920554"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5084829415","display_name":"Mohammed E. Fouda","orcid":"https://orcid.org/0000-0001-7139-3428"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Mohammed E. Fouda","raw_affiliation_strings":["Rain Neuromorphics Inc.,San Francisco,CA,USA","Rain Neuromorphics Inc., San Francisco, CA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Rain Neuromorphics Inc.,San Francisco,CA,USA","institution_ids":[]},{"raw_affiliation_string":"Rain Neuromorphics Inc., San Francisco, CA, USA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071376756","display_name":"Rouwaida Kanj","orcid":"https://orcid.org/0000-0002-3519-2917"},"institutions":[{"id":"https://openalex.org/I4210088951","display_name":"Synopsys (United States)","ror":"https://ror.org/013by2m91","country_code":"US","type":"company","lineage":["https://openalex.org/I4210088951"]},{"id":"https://openalex.org/I98635879","display_name":"American University of Beirut","ror":"https://ror.org/04pznsd21","country_code":"LB","type":"education","lineage":["https://openalex.org/I98635879"]}],"countries":["LB","US"],"is_corresponding":false,"raw_author_name":"Rouwaida Kanj","raw_affiliation_strings":["American University of Beirut,ECE Dept.,Lebanon,1107 202","Synopsys Inc., Austin, TX, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"American University of Beirut,ECE Dept.,Lebanon,1107 202","institution_ids":["https://openalex.org/I98635879"]},{"raw_affiliation_string":"Synopsys Inc., Austin, TX, USA","institution_ids":["https://openalex.org/I4210088951"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5013660772","display_name":"Ahmed M. Eltawil","orcid":"https://orcid.org/0000-0003-1849-083X"},"institutions":[{"id":"https://openalex.org/I71920554","display_name":"King Abdullah University of Science and Technology","ror":"https://ror.org/01q3tbs38","country_code":"SA","type":"education","lineage":["https://openalex.org/I71920554"]}],"countries":["SA"],"is_corresponding":false,"raw_author_name":"Ahmed M. Eltawil","raw_affiliation_strings":["King Abdullah University of Science and Technology (KAUST),Thuwal,Saudi Arabia,23955"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"King Abdullah University of Science and Technology (KAUST),Thuwal,Saudi Arabia,23955","institution_ids":["https://openalex.org/I71920554"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":3,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"1","last_page":"5"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10502","display_name":"Advanced Memory and Neural Computing","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/2208","display_name":"Electrical and Electronic Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10502","display_name":"Advanced Memory and Neural Computing","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/2208","display_name":"Electrical and Electronic Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12808","display_name":"Ferroelectric and Negative Capacitance Devices","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/2208","display_name":"Electrical and Electronic Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10207","display_name":"Advanced biosensing and bioanalysis techniques","score":0.9980999827384949,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7035568356513977},{"id":"https://openalex.org/keywords/robustness","display_name":"Robustness (evolution)","score":0.5854393243789673},{"id":"https://openalex.org/keywords/pattern-matching","display_name":"Pattern matching","score":0.5165461897850037},{"id":"https://openalex.org/keywords/detector","display_name":"Detector","score":0.494851291179657},{"id":"https://openalex.org/keywords/latency","display_name":"Latency (audio)","score":0.4938102662563324},{"id":"https://openalex.org/keywords/binary-number","display_name":"Binary number","score":0.4896896183490753},{"id":"https://openalex.org/keywords/memristor","display_name":"Memristor","score":0.4799506962299347},{"id":"https://openalex.org/keywords/cmos","display_name":"CMOS","score":0.4480116367340088},{"id":"https://openalex.org/keywords/electronic-circuit","display_name":"Electronic circuit","score":0.44411081075668335},{"id":"https://openalex.org/keywords/dna-computing","display_name":"DNA computing","score":0.43680456280708313},{"id":"https://openalex.org/keywords/computer-hardware","display_name":"Computer hardware","score":0.4257364869117737},{"id":"https://openalex.org/keywords/decoding-methods","display_name":"Decoding methods","score":0.41832998394966125},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.27351605892181396},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.25833457708358765},{"id":"https://openalex.org/keywords/electronic-engineering","display_name":"Electronic engineering","score":0.23033276200294495},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.13355329632759094},{"id":"https://openalex.org/keywords/arithmetic","display_name":"Arithmetic","score":0.11485743522644043},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.11268928647041321},{"id":"https://openalex.org/keywords/electrical-engineering","display_name":"Electrical engineering","score":0.09011530876159668}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7035568356513977},{"id":"https://openalex.org/C63479239","wikidata":"https://www.wikidata.org/wiki/Q7353546","display_name":"Robustness (evolution)","level":3,"score":0.5854393243789673},{"id":"https://openalex.org/C68859911","wikidata":"https://www.wikidata.org/wiki/Q1503724","display_name":"Pattern matching","level":2,"score":0.5165461897850037},{"id":"https://openalex.org/C94915269","wikidata":"https://www.wikidata.org/wiki/Q1834857","display_name":"Detector","level":2,"score":0.494851291179657},{"id":"https://openalex.org/C82876162","wikidata":"https://www.wikidata.org/wiki/Q17096504","display_name":"Latency (audio)","level":2,"score":0.4938102662563324},{"id":"https://openalex.org/C48372109","wikidata":"https://www.wikidata.org/wiki/Q3913","display_name":"Binary number","level":2,"score":0.4896896183490753},{"id":"https://openalex.org/C150072547","wikidata":"https://www.wikidata.org/wiki/Q212923","display_name":"Memristor","level":2,"score":0.4799506962299347},{"id":"https://openalex.org/C46362747","wikidata":"https://www.wikidata.org/wiki/Q173431","display_name":"CMOS","level":2,"score":0.4480116367340088},{"id":"https://openalex.org/C134146338","wikidata":"https://www.wikidata.org/wiki/Q1815901","display_name":"Electronic circuit","level":2,"score":0.44411081075668335},{"id":"https://openalex.org/C82047324","wikidata":"https://www.wikidata.org/wiki/Q177126","display_name":"DNA computing","level":3,"score":0.43680456280708313},{"id":"https://openalex.org/C9390403","wikidata":"https://www.wikidata.org/wiki/Q3966","display_name":"Computer hardware","level":1,"score":0.4257364869117737},{"id":"https://openalex.org/C57273362","wikidata":"https://www.wikidata.org/wiki/Q576722","display_name":"Decoding methods","level":2,"score":0.41832998394966125},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.27351605892181396},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.25833457708358765},{"id":"https://openalex.org/C24326235","wikidata":"https://www.wikidata.org/wiki/Q126095","display_name":"Electronic engineering","level":1,"score":0.23033276200294495},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.13355329632759094},{"id":"https://openalex.org/C94375191","wikidata":"https://www.wikidata.org/wiki/Q11205","display_name":"Arithmetic","level":1,"score":0.11485743522644043},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.11268928647041321},{"id":"https://openalex.org/C119599485","wikidata":"https://www.wikidata.org/wiki/Q43035","display_name":"Electrical engineering","level":1,"score":0.09011530876159668},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C45374587","wikidata":"https://www.wikidata.org/wiki/Q12525525","display_name":"Computation","level":2,"score":0.0},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.0},{"id":"https://openalex.org/C76155785","wikidata":"https://www.wikidata.org/wiki/Q418","display_name":"Telecommunications","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1109/iscas46773.2023.10181367","is_oa":false,"landing_page_url":"https://doi.org/10.1109/iscas46773.2023.10181367","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2023 IEEE International Symposium on Circuits and Systems (ISCAS)","raw_type":"proceedings-article"},{"id":"pmh:oai:repository.kaust.edu.sa:10754/693185","is_oa":false,"landing_page_url":"http://hdl.handle.net/10754/693185","pdf_url":null,"source":{"id":"https://openalex.org/S4306401596","display_name":"King Abdullah University of Science and Technology Repository (King Abdullah University of Science and Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I71920554","host_organization_name":"King Abdullah University of Science and Technology","host_organization_lineage":["https://openalex.org/I71920554"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Conference Paper"}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.8899999856948853,"id":"https://metadata.un.org/sdg/7","display_name":"Affordable and clean energy"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":11,"referenced_works":["https://openalex.org/W2077255009","https://openalex.org/W2547407456","https://openalex.org/W2586449928","https://openalex.org/W2729455382","https://openalex.org/W2783973318","https://openalex.org/W3001630589","https://openalex.org/W4225685466","https://openalex.org/W4281687861","https://openalex.org/W6669624055","https://openalex.org/W6810395124","https://openalex.org/W6838527759"],"related_works":["https://openalex.org/W4229452466","https://openalex.org/W2966276069","https://openalex.org/W2304829496","https://openalex.org/W2358307108","https://openalex.org/W3031124155","https://openalex.org/W2463286374","https://openalex.org/W2052332160","https://openalex.org/W2204001882","https://openalex.org/W190448578","https://openalex.org/W2377121108"],"abstract_inverted_index":{"DNA":[0,37,53,64,85],"pattern":[1,38,65,86,117],"matching":[2],"is":[3,20],"a":[4,35,72,90],"key":[5],"technique":[6,14],"applied":[7],"in":[8,120,159,167,170],"many":[9],"bioinformatics":[10],"applications.":[11],"Recently,":[12],"this":[13,68],"has":[15],"become":[16],"very":[17],"popular":[18],"and":[19,42,58,99,116,131,142,176],"widely":[21],"used":[22,139],"for":[23,97,127],"genetic":[24],"disease":[25],"diagnosis,":[26],"where":[27],"finding":[28],"the":[29,40,45,49,56,78,112,123,144,150,164,168],"number":[30],"of":[31,34,44,52,80,107,149],"consecutive":[32],"repeats":[33],"specific":[36],"indicates":[39],"type":[41],"intensity":[43],"patient's":[46],"disorder.":[47],"However,":[48],"remarkable":[50],"growth":[51],"data":[54,101],"exacerbates":[55],"latency":[57],"power":[59],"consumption":[60],"required":[61],"to":[62,76,122,140,163,172],"perform":[63],"matching.":[66,87],"In":[67],"work,":[69],"we":[70],"propose":[71,89],"hardware":[73],"accelerator":[74],"design":[75,141,152],"detect":[77],"presence":[79],"different":[81],"diseases":[82],"efficiently":[83],"using":[84,94],"We":[88],"novel":[91],"CAM":[92,128],"cell":[93],"binary":[95],"memristors":[96],"reliable":[98],"robust":[100],"encoding.":[102],"The":[103,147],"proposed":[104,151],"architecture":[105],"consists":[106],"two":[108],"main":[109],"building":[110],"blocks":[111],"Content-addressable":[113],"memory":[114],"(CAM)":[115],"detector":[118],"circuits":[119,126],"addition":[121,171],"needed":[124],"peripheral":[125],"read,":[129],"write":[130],"match":[132],"operation.":[133],"CMOS":[134],"PTM":[135],"45nm":[136],"technology":[137],"was":[138],"simulate":[143],"full":[145],"architecture.":[146],"evaluation":[148],"shows":[153],"<tex":[154],"xmlns:mml=\"http://www.w3.org/1998/Math/MathML\"":[155],"xmlns:xlink=\"http://www.w3.org/1999/xlink\">$\\sim":[156],"2\\times$</tex>":[157],"improvement":[158],"energy-delay-area":[160],"product":[161],"compared":[162],"state-of-art":[165],"work":[166],"literature,":[169],"robustness":[173],"against":[174],"noise":[175],"process":[177],"variations.":[178]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1}],"updated_date":"2026-07-14T23:27:15.235271","created_date":"2025-10-10T00:00:00"}