{"id":"https://openalex.org/W2008844983","doi":"https://doi.org/10.1109/iscas.2010.5537736","title":"Hardware accelerators for biocomputing: A survey","display_name":"Hardware accelerators for biocomputing: A survey","publication_year":2010,"publication_date":"2010-05-01","ids":{"openalex":"https://openalex.org/W2008844983","doi":"https://doi.org/10.1109/iscas.2010.5537736","mag":"2008844983"},"language":"en","primary_location":{"id":"doi:10.1109/iscas.2010.5537736","is_oa":false,"landing_page_url":"https://doi.org/10.1109/iscas.2010.5537736","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of 2010 IEEE International Symposium on Circuits and Systems","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5108695167","display_name":"Souradip Sarkar","orcid":null},"institutions":[{"id":"https://openalex.org/I72951846","display_name":"Washington State University","ror":"https://ror.org/05dk0ce17","country_code":"US","type":"education","lineage":["https://openalex.org/I72951846"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Souradip Sarkar","raw_affiliation_strings":["School of Electrical Engineering and Computer Science, Washington State University, Pullman, USA","School of Electrical Engineering and Computer Science , Washington State University , Pullman , USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Electrical Engineering and Computer Science, Washington State University, Pullman, USA","institution_ids":["https://openalex.org/I72951846"]},{"raw_affiliation_string":"School of Electrical Engineering and Computer Science , Washington State University , Pullman , USA","institution_ids":["https://openalex.org/I72951846"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090245094","display_name":"Turbo Majumder","orcid":null},"institutions":[{"id":"https://openalex.org/I72951846","display_name":"Washington State University","ror":"https://ror.org/05dk0ce17","country_code":"US","type":"education","lineage":["https://openalex.org/I72951846"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Turbo Majumder","raw_affiliation_strings":["School of Electrical Engineering and Computer Science, Washington State University, Pullman, USA","School of Electrical Engineering and Computer Science , Washington State University , Pullman , USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Electrical Engineering and Computer Science, Washington State University, Pullman, USA","institution_ids":["https://openalex.org/I72951846"]},{"raw_affiliation_string":"School of Electrical Engineering and Computer Science , Washington State University , Pullman , USA","institution_ids":["https://openalex.org/I72951846"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048410309","display_name":"Ananth Kalyanaraman","orcid":"https://orcid.org/0000-0001-6721-233X"},"institutions":[{"id":"https://openalex.org/I72951846","display_name":"Washington State University","ror":"https://ror.org/05dk0ce17","country_code":"US","type":"education","lineage":["https://openalex.org/I72951846"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ananth Kalyanaraman","raw_affiliation_strings":["School of Electrical Engineering and Computer Science, Washington State University, Pullman, USA","School of Electrical Engineering and Computer Science , Washington State University , Pullman , USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Electrical Engineering and Computer Science, Washington State University, Pullman, USA","institution_ids":["https://openalex.org/I72951846"]},{"raw_affiliation_string":"School of Electrical Engineering and Computer Science , Washington State University , Pullman , USA","institution_ids":["https://openalex.org/I72951846"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5078441163","display_name":"Partha Pratim Pande","orcid":"https://orcid.org/0000-0002-5930-8531"},"institutions":[{"id":"https://openalex.org/I72951846","display_name":"Washington State University","ror":"https://ror.org/05dk0ce17","country_code":"US","type":"education","lineage":["https://openalex.org/I72951846"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Partha Pratim Pande","raw_affiliation_strings":["School of Electrical Engineering and Computer Science, Washington State University, Pullman, USA","School of Electrical Engineering and Computer Science , Washington State University , Pullman , USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Electrical Engineering and Computer Science, Washington State University, Pullman, USA","institution_ids":["https://openalex.org/I72951846"]},{"raw_affiliation_string":"School of Electrical Engineering and Computer Science , Washington State University , Pullman , USA","institution_ids":["https://openalex.org/I72951846"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I72951846"],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":40,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":"63","issue":null,"first_page":"3789","last_page":"3792"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11975","display_name":"Evolutionary Algorithms and Applications","score":0.9961000084877014,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11975","display_name":"Evolutionary Algorithms and Applications","score":0.9961000084877014,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10904","display_name":"Embedded Systems Design Techniques","score":0.9948999881744385,"subfield":{"id":"https://openalex.org/subfields/1708","display_name":"Hardware and Architecture"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9848999977111816,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7603064775466919},{"id":"https://openalex.org/keywords/graphics","display_name":"Graphics","score":0.5953712463378906},{"id":"https://openalex.org/keywords/graphics-processing-unit","display_name":"Graphics processing unit","score":0.5951945781707764},{"id":"https://openalex.org/keywords/field-programmable-gate-array","display_name":"Field-programmable gate array","score":0.5853106379508972},{"id":"https://openalex.org/keywords/hardware-acceleration","display_name":"Hardware acceleration","score":0.5700685977935791},{"id":"https://openalex.org/keywords/computer-architecture","display_name":"Computer architecture","score":0.5494166016578674},{"id":"https://openalex.org/keywords/embedded-system","display_name":"Embedded system","score":0.47144898772239685},{"id":"https://openalex.org/keywords/computer-hardware","display_name":"Computer hardware","score":0.463552862405777},{"id":"https://openalex.org/keywords/multi-core-processor","display_name":"Multi-core processor","score":0.46209967136383057},{"id":"https://openalex.org/keywords/instruction-set","display_name":"Instruction set","score":0.4145240783691406},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.3124648928642273}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7603064775466919},{"id":"https://openalex.org/C21442007","wikidata":"https://www.wikidata.org/wiki/Q1027879","display_name":"Graphics","level":2,"score":0.5953712463378906},{"id":"https://openalex.org/C2779851693","wikidata":"https://www.wikidata.org/wiki/Q183484","display_name":"Graphics processing unit","level":2,"score":0.5951945781707764},{"id":"https://openalex.org/C42935608","wikidata":"https://www.wikidata.org/wiki/Q190411","display_name":"Field-programmable gate array","level":2,"score":0.5853106379508972},{"id":"https://openalex.org/C13164978","wikidata":"https://www.wikidata.org/wiki/Q600158","display_name":"Hardware acceleration","level":3,"score":0.5700685977935791},{"id":"https://openalex.org/C118524514","wikidata":"https://www.wikidata.org/wiki/Q173212","display_name":"Computer architecture","level":1,"score":0.5494166016578674},{"id":"https://openalex.org/C149635348","wikidata":"https://www.wikidata.org/wiki/Q193040","display_name":"Embedded system","level":1,"score":0.47144898772239685},{"id":"https://openalex.org/C9390403","wikidata":"https://www.wikidata.org/wiki/Q3966","display_name":"Computer hardware","level":1,"score":0.463552862405777},{"id":"https://openalex.org/C78766204","wikidata":"https://www.wikidata.org/wiki/Q555032","display_name":"Multi-core processor","level":2,"score":0.46209967136383057},{"id":"https://openalex.org/C202491316","wikidata":"https://www.wikidata.org/wiki/Q272683","display_name":"Instruction set","level":2,"score":0.4145240783691406},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.3124648928642273}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/iscas.2010.5537736","is_oa":false,"landing_page_url":"https://doi.org/10.1109/iscas.2010.5537736","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of 2010 IEEE International Symposium on Circuits and Systems","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Industry, innovation and infrastructure","id":"https://metadata.un.org/sdg/9","score":0.4099999964237213}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":24,"referenced_works":["https://openalex.org/W2008630615","https://openalex.org/W2028263411","https://openalex.org/W2055043387","https://openalex.org/W2075871133","https://openalex.org/W2086364561","https://openalex.org/W2086889049","https://openalex.org/W2087064593","https://openalex.org/W2101464940","https://openalex.org/W2101988600","https://openalex.org/W2106776401","https://openalex.org/W2116377941","https://openalex.org/W2116508956","https://openalex.org/W2118341874","https://openalex.org/W2128400642","https://openalex.org/W2136092475","https://openalex.org/W2137587811","https://openalex.org/W2143180875","https://openalex.org/W2150056503","https://openalex.org/W2158847865","https://openalex.org/W2159497832","https://openalex.org/W2166760518","https://openalex.org/W4236236547","https://openalex.org/W6677121251","https://openalex.org/W6677778760"],"related_works":["https://openalex.org/W2128523353","https://openalex.org/W2291648581","https://openalex.org/W2107644726","https://openalex.org/W2406856881","https://openalex.org/W4396674251","https://openalex.org/W2220968517","https://openalex.org/W2060611139","https://openalex.org/W2040437312","https://openalex.org/W2142903600","https://openalex.org/W4401753390"],"abstract_inverted_index":{"Computing":[0,15],"research":[1],"has":[2,16],"become":[3],"a":[4,78,87],"vital":[5],"cog":[6],"in":[7,26,48],"the":[8,22,27,34,42,62],"machinery":[9],"required":[10],"to":[11],"drive":[12],"biological":[13],"discovery.":[14],"made":[17],"possible":[18],"significant":[19],"achievements":[20],"over":[21],"last":[23],"decade,":[24],"especially":[25],"genomics":[28],"sector.":[29],"An":[30],"emerging":[31],"area":[32],"is":[33],"investigation":[35],"of":[36,45,80,90],"hardware":[37,53,81],"accelerators":[38,82],"for":[39,83],"speeding":[40],"up":[41],"massive":[43],"scale":[44],"computation":[46],"needed":[47],"large-scale":[49],"biocomputing":[50,84],"applications.":[51],"Various":[52],"platforms,":[54],"such":[55],"as":[56],"FPGA,":[57],"Graphics":[58],"Processing":[59],"Unit":[60],"(GPU),":[61],"Cell":[63],"Broadband":[64],"Engine":[65],"(CBE)":[66],"and":[67],"multi-core":[68],"processors":[69],"are":[70],"being":[71],"explored.":[72],"In":[73],"this":[74],"paper,":[75],"we":[76],"present":[77],"survey":[79],"by":[85],"choosing":[86],"representative":[88],"set":[89],"each.":[91]},"counts_by_year":[{"year":2022,"cited_by_count":1},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":5},{"year":2016,"cited_by_count":8},{"year":2015,"cited_by_count":6},{"year":2014,"cited_by_count":7},{"year":2013,"cited_by_count":2},{"year":2012,"cited_by_count":4}],"updated_date":"2026-07-14T23:27:15.235271","created_date":"2025-10-10T00:00:00"}
