{"id":"https://openalex.org/W2095048023","doi":"https://doi.org/10.1109/iscas.2010.5537549","title":"Probability metrics to calibrate stochastic chemical kinetics","display_name":"Probability metrics to calibrate stochastic chemical kinetics","publication_year":2010,"publication_date":"2010-05-01","ids":{"openalex":"https://openalex.org/W2095048023","doi":"https://doi.org/10.1109/iscas.2010.5537549","mag":"2095048023"},"language":"en","primary_location":{"id":"doi:10.1109/iscas.2010.5537549","is_oa":false,"landing_page_url":"https://doi.org/10.1109/iscas.2010.5537549","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of 2010 IEEE International Symposium on Circuits and Systems","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"http://infoscience.epfl.ch/record/146518","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5070544702","display_name":"Heinz Koeppl","orcid":"https://orcid.org/0000-0002-8305-9379"},"institutions":[{"id":"https://openalex.org/I5124864","display_name":"\u00c9cole Polytechnique F\u00e9d\u00e9rale de Lausanne","ror":"https://ror.org/02s376052","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I5124864"]}],"countries":["CH"],"is_corresponding":true,"raw_author_name":"Heinz Koeppl","raw_affiliation_strings":["School of Communication and Computer Sciences, Ecole Polytechnique Federale de Lausanne (EPFL), Switzerland"],"affiliations":[{"raw_affiliation_string":"School of Communication and Computer Sciences, Ecole Polytechnique Federale de Lausanne (EPFL), Switzerland","institution_ids":["https://openalex.org/I5124864"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062714455","display_name":"Gianluca Setti","orcid":"https://orcid.org/0000-0002-2496-1856"},"institutions":[{"id":"https://openalex.org/I9360294","display_name":"University of Bologna","ror":"https://ror.org/01111rn36","country_code":"IT","type":"education","lineage":["https://openalex.org/I9360294"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Gianluca Setti","raw_affiliation_strings":["Department of Electronics, Computer Sciences and Systems, University of Bologna, Italy"],"affiliations":[{"raw_affiliation_string":"Department of Electronics, Computer Sciences and Systems, University of Bologna, Italy","institution_ids":["https://openalex.org/I9360294"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077381000","display_name":"Serge Pelet","orcid":"https://orcid.org/0000-0002-0245-049X"},"institutions":[{"id":"https://openalex.org/I5124864","display_name":"\u00c9cole Polytechnique F\u00e9d\u00e9rale de Lausanne","ror":"https://ror.org/02s376052","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I5124864"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Serge Pelet","raw_affiliation_strings":["Institute of Biochemistry, Swiss Federal Institute of Technology Zurich (ETHZ), Switzerland","Institute of Biochemistry, Swiss Federal Institute of Technology, Switzerland"],"affiliations":[{"raw_affiliation_string":"Institute of Biochemistry, Swiss Federal Institute of Technology Zurich (ETHZ), Switzerland","institution_ids":["https://openalex.org/I5124864"]},{"raw_affiliation_string":"Institute of Biochemistry, Swiss Federal Institute of Technology, Switzerland","institution_ids":["https://openalex.org/I5124864"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081473165","display_name":"Mauro Mangia","orcid":"https://orcid.org/0000-0002-3818-9115"},"institutions":[{"id":"https://openalex.org/I9360294","display_name":"University of Bologna","ror":"https://ror.org/01111rn36","country_code":"IT","type":"education","lineage":["https://openalex.org/I9360294"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Mauro Mangia","raw_affiliation_strings":["Department of Electronics, Computer Sciences and Systems, University of Bologna, Italy"],"affiliations":[{"raw_affiliation_string":"Department of Electronics, Computer Sciences and Systems, University of Bologna, Italy","institution_ids":["https://openalex.org/I9360294"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091695783","display_name":"Tatjana Petrov","orcid":"https://orcid.org/0000-0002-9041-0905"},"institutions":[{"id":"https://openalex.org/I5124864","display_name":"\u00c9cole Polytechnique F\u00e9d\u00e9rale de Lausanne","ror":"https://ror.org/02s376052","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I5124864"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Tatjana Petrov","raw_affiliation_strings":["School of Communication and Computer Sciences, Ecole Polytechnique Federale de Lausanne (EPFL), Switzerland"],"affiliations":[{"raw_affiliation_string":"School of Communication and Computer Sciences, Ecole Polytechnique Federale de Lausanne (EPFL), Switzerland","institution_ids":["https://openalex.org/I5124864"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5080958654","display_name":"Matthias Peter","orcid":"https://orcid.org/0000-0002-2160-6824"},"institutions":[{"id":"https://openalex.org/I5124864","display_name":"\u00c9cole Polytechnique F\u00e9d\u00e9rale de Lausanne","ror":"https://ror.org/02s376052","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I5124864"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Matthias Peter","raw_affiliation_strings":["Institute of Biochemistry, Swiss Federal Institute of Technology Zurich (ETHZ), Switzerland","Institute of Biochemistry, Swiss Federal Institute of Technology, Switzerland"],"affiliations":[{"raw_affiliation_string":"Institute of Biochemistry, Swiss Federal Institute of Technology Zurich (ETHZ), Switzerland","institution_ids":["https://openalex.org/I5124864"]},{"raw_affiliation_string":"Institute of Biochemistry, Swiss Federal Institute of Technology, Switzerland","institution_ids":["https://openalex.org/I5124864"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5070544702"],"corresponding_institution_ids":["https://openalex.org/I5124864"],"apc_list":null,"apc_paid":null,"fwci":0.6777,"has_fulltext":false,"cited_by_count":6,"citation_normalized_percentile":{"value":0.69573104,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":97},"biblio":{"volume":null,"issue":null,"first_page":"541","last_page":"544"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9940000176429749,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10497","display_name":"Fungal and yeast genetics research","score":0.9448999762535095,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6645005345344543},{"id":"https://openalex.org/keywords/calibration","display_name":"Calibration","score":0.6442054510116577},{"id":"https://openalex.org/keywords/markov-process","display_name":"Markov process","score":0.5664349794387817},{"id":"https://openalex.org/keywords/sorting","display_name":"Sorting","score":0.5602248907089233},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.522890031337738},{"id":"https://openalex.org/keywords/noise","display_name":"Noise (video)","score":0.5212883949279785},{"id":"https://openalex.org/keywords/computation","display_name":"Computation","score":0.49362409114837646},{"id":"https://openalex.org/keywords/synthetic-data","display_name":"Synthetic data","score":0.41797637939453125},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.38143107295036316},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.37330764532089233},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.2233833372592926},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.21474692225456238},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.17500844597816467}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6645005345344543},{"id":"https://openalex.org/C165838908","wikidata":"https://www.wikidata.org/wiki/Q736777","display_name":"Calibration","level":2,"score":0.6442054510116577},{"id":"https://openalex.org/C159886148","wikidata":"https://www.wikidata.org/wiki/Q176645","display_name":"Markov process","level":2,"score":0.5664349794387817},{"id":"https://openalex.org/C111696304","wikidata":"https://www.wikidata.org/wiki/Q2303697","display_name":"Sorting","level":2,"score":0.5602248907089233},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.522890031337738},{"id":"https://openalex.org/C99498987","wikidata":"https://www.wikidata.org/wiki/Q2210247","display_name":"Noise (video)","level":3,"score":0.5212883949279785},{"id":"https://openalex.org/C45374587","wikidata":"https://www.wikidata.org/wiki/Q12525525","display_name":"Computation","level":2,"score":0.49362409114837646},{"id":"https://openalex.org/C160920958","wikidata":"https://www.wikidata.org/wiki/Q7662746","display_name":"Synthetic data","level":2,"score":0.41797637939453125},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.38143107295036316},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.37330764532089233},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2233833372592926},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.21474692225456238},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.17500844597816467},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.0}],"mesh":[],"locations_count":7,"locations":[{"id":"doi:10.1109/iscas.2010.5537549","is_oa":false,"landing_page_url":"https://doi.org/10.1109/iscas.2010.5537549","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of 2010 IEEE International Symposium on Circuits and Systems","raw_type":"proceedings-article"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.800.4016","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.800.4016","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://infoscience.epfl.ch/record/146518/files/PID1142773.pdf","raw_type":"text"},{"id":"pmh:oai:infoscience.epfl.ch:146518","is_oa":true,"landing_page_url":"http://infoscience.epfl.ch/record/146518","pdf_url":null,"source":{"id":"https://openalex.org/S4306400487","display_name":"Infoscience (Ecole Polytechnique F\u00e9d\u00e9rale de Lausanne)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:infoscience.epfl.ch:172021","is_oa":true,"landing_page_url":"http://infoscience.epfl.ch/record/172021","pdf_url":null,"source":{"id":"https://openalex.org/S4306400487","display_name":"Infoscience (Ecole Polytechnique F\u00e9d\u00e9rale de Lausanne)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:infoscience.tind.io:146518","is_oa":true,"landing_page_url":"https://infoscience.epfl.ch/handle/20.500.14299/47378","pdf_url":null,"source":{"id":"https://openalex.org/S4306400487","display_name":"Infoscience (Ecole Polytechnique F\u00e9d\u00e9rale de Lausanne)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"conference proceedings"},{"id":"pmh:oai:iris.unife.it:11392/1395176","is_oa":false,"landing_page_url":"http://hdl.handle.net/11392/1395176","pdf_url":null,"source":{"id":"https://openalex.org/S4306400369","display_name":"Institutional Research Information System University of Ferrara (University of Ferrara)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I201324441","host_organization_name":"University of Ferrara","host_organization_lineage":["https://openalex.org/I201324441"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/conferenceObject"},{"id":"pmh:oai:tubiblio.ulb.tu-darmstadt.de:65012","is_oa":false,"landing_page_url":"http://tubiblio.ulb.tu-darmstadt.de/65012/","pdf_url":null,"source":{"id":"https://openalex.org/S4377196390","display_name":"TUbilio (Technical University of Darmstadt)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I31512782","host_organization_name":"Technische Universit\u00e4t Darmstadt","host_organization_lineage":["https://openalex.org/I31512782"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Konferenzver\u00f6ffentlichung"}],"best_oa_location":{"id":"pmh:oai:infoscience.epfl.ch:146518","is_oa":true,"landing_page_url":"http://infoscience.epfl.ch/record/146518","pdf_url":null,"source":{"id":"https://openalex.org/S4306400487","display_name":"Infoscience (Ecole Polytechnique F\u00e9d\u00e9rale de Lausanne)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":28,"referenced_works":["https://openalex.org/W149503075","https://openalex.org/W564963328","https://openalex.org/W1499965417","https://openalex.org/W1514324734","https://openalex.org/W1802534514","https://openalex.org/W1965114482","https://openalex.org/W1978730538","https://openalex.org/W1984217390","https://openalex.org/W2060872711","https://openalex.org/W2062404235","https://openalex.org/W2076382102","https://openalex.org/W2078119846","https://openalex.org/W2078179989","https://openalex.org/W2085061065","https://openalex.org/W2098161947","https://openalex.org/W2098622547","https://openalex.org/W2134589175","https://openalex.org/W2152246075","https://openalex.org/W2164796316","https://openalex.org/W2169509065","https://openalex.org/W2171280873","https://openalex.org/W2254463431","https://openalex.org/W2276499310","https://openalex.org/W3032178761","https://openalex.org/W3202912068","https://openalex.org/W4298373403","https://openalex.org/W4302061594","https://openalex.org/W6779182798"],"related_works":["https://openalex.org/W2739612537","https://openalex.org/W2349174696","https://openalex.org/W2360241746","https://openalex.org/W4313041667","https://openalex.org/W2767599893","https://openalex.org/W2381572297","https://openalex.org/W4388070314","https://openalex.org/W2106741186","https://openalex.org/W2368890809","https://openalex.org/W1922771929"],"abstract_inverted_index":{"Calibration":[0],"or":[1],"model":[2,57],"parameter":[3],"estimation":[4],"from":[5],"measured":[6],"data":[7,34,134],"is":[8],"an":[9,114],"ubiquitous":[10],"problem":[11,18,69],"in":[12,70,141],"engineering.":[13],"In":[14,106],"systems":[15,71],"biology":[16],"this":[17],"turns":[19],"out":[20],"to":[21,26,44,65],"be":[22],"particularly":[23],"challenging":[24],"due":[25],"very":[27],"short":[28],"data-records,":[29],"low":[30],"signal-to-noise":[31],"ratio":[32],"of":[33,48],"acquisition,":[35],"large":[36],"intrinsic":[37],"process":[38,83],"noise":[39],"and":[40,60,85,97,112],"limited":[41],"measurement":[42],"access":[43],"only":[45],"a":[46,81,87,129],"few,":[47],"sometimes":[49],"several":[50],"hundreds,":[51],"state":[52],"variables.":[53],"We":[54,127],"review":[55],"state-of-the-art":[56],"calibration":[58,88],"techniques":[59],"also":[61],"discuss":[62,86,128],"their":[63],"relation":[64],"the":[66,99,103,117,136],"general":[67],"reverse-engineering":[68],"biology.":[72],"For":[73],"biomolecular":[74],"circuits":[75],"involving":[76,132],"low-copy-number":[77],"molecules":[78],"we":[79,108],"adopt":[80],"Markov":[82],"setup":[84],"approach":[89],"based":[90],"on":[91],"suitable":[92],"metrics":[93,100],"between":[94],"probability":[95],"measures":[96],"propose":[98],"computation":[101],"for":[102,116,135],"multivariate":[104],"case.":[105],"particular,":[107],"use":[109],"Kantorovich's":[110],"distance":[111],"devise":[113],"algorithm,":[115],"case":[118,130],"when":[119],"FACS":[120,133],"(fluorescence-activated":[121],"cell":[122],"sorting)":[123],"measurements":[124],"are":[125],"given.":[126],"study":[131],"high-osmolarity":[137],"glycerol":[138],"(HOG)":[139],"pathway":[140],"budding":[142],"yeast.":[143]},"counts_by_year":[{"year":2019,"cited_by_count":1},{"year":2012,"cited_by_count":3}],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}
