{"id":"https://openalex.org/W2084405349","doi":"https://doi.org/10.1109/iscas.2010.5537540","title":"Rule based constraints for the construction of genetic devices","display_name":"Rule based constraints for the construction of genetic devices","publication_year":2010,"publication_date":"2010-05-01","ids":{"openalex":"https://openalex.org/W2084405349","doi":"https://doi.org/10.1109/iscas.2010.5537540","mag":"2084405349"},"language":"en","primary_location":{"id":"doi:10.1109/iscas.2010.5537540","is_oa":false,"landing_page_url":"https://doi.org/10.1109/iscas.2010.5537540","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of 2010 IEEE International Symposium on Circuits and Systems","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5006554658","display_name":"Douglas Densmore","orcid":"https://orcid.org/0000-0002-7666-6808"},"institutions":[{"id":"https://openalex.org/I53012624","display_name":"Joint BioEnergy Institute","ror":"https://ror.org/03ww55028","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I53012624"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Douglas Densmore","raw_affiliation_strings":["Synthetic Biology Engineering Research Center, Joint BioEnergy Institute, Emeryville, CA, USA","Synthetic Biology Engineering Research Center, Joint BioEnergy Institute, Emeryville, CA 94608"],"affiliations":[{"raw_affiliation_string":"Synthetic Biology Engineering Research Center, Joint BioEnergy Institute, Emeryville, CA, USA","institution_ids":["https://openalex.org/I53012624"]},{"raw_affiliation_string":"Synthetic Biology Engineering Research Center, Joint BioEnergy Institute, Emeryville, CA 94608","institution_ids":["https://openalex.org/I53012624"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5113551551","display_name":"Joshua T. Kittleson","orcid":null},"institutions":[{"id":"https://openalex.org/I95457486","display_name":"University of California, Berkeley","ror":"https://ror.org/01an7q238","country_code":"US","type":"education","lineage":["https://openalex.org/I95457486"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Joshua T. Kittleson","raw_affiliation_strings":["Department of Bioengineering, University of California, Berkeley, CA 94720","Dept. of Bioengineering, University of California, Berkeley, CA 94720"],"affiliations":[{"raw_affiliation_string":"Department of Bioengineering, University of California, Berkeley, CA 94720","institution_ids":["https://openalex.org/I95457486"]},{"raw_affiliation_string":"Dept. of Bioengineering, University of California, Berkeley, CA 94720","institution_ids":["https://openalex.org/I95457486"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5013200983","display_name":"Lesia Bilitchenko","orcid":null},"institutions":[{"id":"https://openalex.org/I98947143","display_name":"California State Polytechnic University","ror":"https://ror.org/05by5hm18","country_code":"US","type":"education","lineage":["https://openalex.org/I98947143"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Lesia Bilitchenko","raw_affiliation_strings":["Department of Computer Science, Cal Poly Pomona, CA, USA","Department of Computer Science, Cal Poly Pomona, CA 91768"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Cal Poly Pomona, CA, USA","institution_ids":["https://openalex.org/I98947143"]},{"raw_affiliation_string":"Department of Computer Science, Cal Poly Pomona, CA 91768","institution_ids":["https://openalex.org/I98947143"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062032733","display_name":"Adam Liu","orcid":"https://orcid.org/0000-0002-1842-7913"},"institutions":[{"id":"https://openalex.org/I95457486","display_name":"University of California, Berkeley","ror":"https://ror.org/01an7q238","country_code":"US","type":"education","lineage":["https://openalex.org/I95457486"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Adam Liu","raw_affiliation_strings":["Department of EECS, University of California, Berkeley, CA, USA","Department of EECS, University of California, Berkeley, CA 94720"],"affiliations":[{"raw_affiliation_string":"Department of EECS, University of California, Berkeley, CA, USA","institution_ids":["https://openalex.org/I95457486"]},{"raw_affiliation_string":"Department of EECS, University of California, Berkeley, CA 94720","institution_ids":["https://openalex.org/I95457486"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5112099193","display_name":"J. Christopher Anderson","orcid":null},"institutions":[{"id":"https://openalex.org/I95457486","display_name":"University of California, Berkeley","ror":"https://ror.org/01an7q238","country_code":"US","type":"education","lineage":["https://openalex.org/I95457486"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"J. Christopher Anderson","raw_affiliation_strings":["Department of Bioengineering, University of California, Berkeley, CA 94720","Dept. of Bioengineering, University of California, Berkeley, CA 94720"],"affiliations":[{"raw_affiliation_string":"Department of Bioengineering, University of California, Berkeley, CA 94720","institution_ids":["https://openalex.org/I95457486"]},{"raw_affiliation_string":"Dept. of Bioengineering, University of California, Berkeley, CA 94720","institution_ids":["https://openalex.org/I95457486"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5006554658"],"corresponding_institution_ids":["https://openalex.org/I53012624"],"apc_list":null,"apc_paid":null,"fwci":2.7063,"has_fulltext":false,"cited_by_count":9,"citation_normalized_percentile":{"value":0.9092674,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":97},"biblio":{"volume":null,"issue":null,"first_page":"557","last_page":"560"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11975","display_name":"Evolutionary Algorithms and Applications","score":0.9973000288009644,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11975","display_name":"Evolutionary Algorithms and Applications","score":0.9973000288009644,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9933000206947327,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11663","display_name":"Viral Infectious Diseases and Gene Expression in Insects","score":0.9761000275611877,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/abstraction","display_name":"Abstraction","score":0.7534213066101074},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7142027020454407},{"id":"https://openalex.org/keywords/domain","display_name":"Domain (mathematical analysis)","score":0.6212068200111389},{"id":"https://openalex.org/keywords/key","display_name":"Key (lock)","score":0.562039852142334},{"id":"https://openalex.org/keywords/genetic-algorithm","display_name":"Genetic algorithm","score":0.48445868492126465},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.45237597823143005},{"id":"https://openalex.org/keywords/domain-specific-language","display_name":"Domain-specific language","score":0.4422869086265564},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.42753350734710693},{"id":"https://openalex.org/keywords/distributed-computing","display_name":"Distributed computing","score":0.3385709524154663},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.3351457715034485},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.1666870415210724},{"id":"https://openalex.org/keywords/computer-security","display_name":"Computer security","score":0.1137000322341919}],"concepts":[{"id":"https://openalex.org/C124304363","wikidata":"https://www.wikidata.org/wiki/Q673661","display_name":"Abstraction","level":2,"score":0.7534213066101074},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7142027020454407},{"id":"https://openalex.org/C36503486","wikidata":"https://www.wikidata.org/wiki/Q11235244","display_name":"Domain (mathematical analysis)","level":2,"score":0.6212068200111389},{"id":"https://openalex.org/C26517878","wikidata":"https://www.wikidata.org/wiki/Q228039","display_name":"Key (lock)","level":2,"score":0.562039852142334},{"id":"https://openalex.org/C8880873","wikidata":"https://www.wikidata.org/wiki/Q187787","display_name":"Genetic algorithm","level":2,"score":0.48445868492126465},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.45237597823143005},{"id":"https://openalex.org/C135257023","wikidata":"https://www.wikidata.org/wiki/Q691358","display_name":"Domain-specific language","level":2,"score":0.4422869086265564},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.42753350734710693},{"id":"https://openalex.org/C120314980","wikidata":"https://www.wikidata.org/wiki/Q180634","display_name":"Distributed computing","level":1,"score":0.3385709524154663},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.3351457715034485},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.1666870415210724},{"id":"https://openalex.org/C38652104","wikidata":"https://www.wikidata.org/wiki/Q3510521","display_name":"Computer security","level":1,"score":0.1137000322341919},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/iscas.2010.5537540","is_oa":false,"landing_page_url":"https://doi.org/10.1109/iscas.2010.5537540","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of 2010 IEEE International Symposium on Circuits and Systems","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/8","score":0.6800000071525574,"display_name":"Decent work and economic growth"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":3,"referenced_works":["https://openalex.org/W2018339654","https://openalex.org/W2111046960","https://openalex.org/W4229693094"],"related_works":["https://openalex.org/W2161550557","https://openalex.org/W2057033141","https://openalex.org/W4387796988","https://openalex.org/W2065949834","https://openalex.org/W4252103056","https://openalex.org/W2917572814","https://openalex.org/W4242858628","https://openalex.org/W2916715723","https://openalex.org/W2150010249","https://openalex.org/W2085476653"],"abstract_inverted_index":{"The":[0],"construction":[1,29],"of":[2,30,54,56],"composite":[3],"genetic":[4,59],"devices":[5],"from":[6,42,70],"primitive":[7],"parts":[8],"is":[9],"a":[10,21,57,62,81],"key":[11],"activity":[12],"in":[13,80,97],"synthetic":[14],"biology.":[15],"Currently":[16],"there":[17],"does":[18],"not":[19],"exist":[20],"formal":[22],"method":[23],"to":[24,45],"specify":[25],"constraints":[26,34,79,90],"on":[27],"the":[28,51,71,98],"these":[31],"devices.":[32],"These":[33,89],"would":[35],"help":[36],"enable":[37],"an":[38],"automated":[39],"design":[40,106],"flow":[41],"device":[43,60],"specification":[44],"physical":[46],"assembly.":[47],"This":[48],"paper":[49],"examines":[50],"laboratory":[52],"creation":[53],"variations":[55],"particular":[58],"called":[61,87],"phagemid.":[63],"We":[64],"illustrate":[65],"how":[66],"lessons":[67],"learned":[68],"empirically":[69],"non-functional":[72],"designs":[73],"can":[74],"be":[75],"captured":[76],"formally":[77],"as":[78],"newly":[82],"created":[83],"domain":[84],"specific":[85],"language":[86],"\u201cEugene\u201d.":[88],"will":[91],"prevent":[92],"many":[93],"faulty":[94],"constructions":[95],"automatically":[96],"future":[99],"saving":[100],"time":[101],"and":[102,108],"money":[103],"while":[104],"increasing":[105],"abstraction":[107],"productivity.":[109]},"counts_by_year":[{"year":2014,"cited_by_count":3},{"year":2012,"cited_by_count":2}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
