{"id":"https://openalex.org/W7161829362","doi":"https://doi.org/10.1109/isbi61048.2026.11516021","title":"An Automated Pipeline for Processing and Analysis of Clinical Fetal Diffusion Mri","display_name":"An Automated Pipeline for Processing and Analysis of Clinical Fetal Diffusion Mri","publication_year":2026,"publication_date":"2026-04-08","ids":{"openalex":"https://openalex.org/W7161829362","doi":"https://doi.org/10.1109/isbi61048.2026.11516021"},"language":null,"primary_location":{"id":"doi:10.1109/isbi61048.2026.11516021","is_oa":false,"landing_page_url":"https://doi.org/10.1109/isbi61048.2026.11516021","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2026 IEEE 23rd International Symposium on Biomedical Imaging (ISBI)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5128242681","display_name":"M Cazzolla","orcid":null},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I4210138220","display_name":"Institut de Neurosciences de la Timone","ror":"https://ror.org/043hw6336","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I21491767","https://openalex.org/I4210096427","https://openalex.org/I4210138220"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"M. Cazzolla","raw_affiliation_strings":["Institut de Neurosciences de la Timone, Aix-Marseille Univ, UMR CNRS,Marseille,France,7289"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institut de Neurosciences de la Timone, Aix-Marseille Univ, UMR CNRS,Marseille,France,7289","institution_ids":["https://openalex.org/I4210138220","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5136553341","display_name":"A. Manchon","orcid":null},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I4210138220","display_name":"Institut de Neurosciences de la Timone","ror":"https://ror.org/043hw6336","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I21491767","https://openalex.org/I4210096427","https://openalex.org/I4210138220"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"A. Manchon","raw_affiliation_strings":["Institut de Neurosciences de la Timone, Aix-Marseille Univ, UMR CNRS,Marseille,France,7289"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institut de Neurosciences de la Timone, Aix-Marseille Univ, UMR CNRS,Marseille,France,7289","institution_ids":["https://openalex.org/I4210138220","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5136512524","display_name":"M. Milh","orcid":null},"institutions":[{"id":"https://openalex.org/I4210087487","display_name":"Assistance Publique H\u00f4pitaux de Marseille","ror":"https://ror.org/002cp4060","country_code":"FR","type":"healthcare","lineage":["https://openalex.org/I4210087487"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"M. Milh","raw_affiliation_strings":["University Hosp.,AP-HM Dept. of Pediatric Neurology,Marseille,France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University Hosp.,AP-HM Dept. of Pediatric Neurology,Marseille,France","institution_ids":["https://openalex.org/I4210087487"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5124215328","display_name":"N. Girard","orcid":null},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I4210138220","display_name":"Institut de Neurosciences de la Timone","ror":"https://ror.org/043hw6336","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I21491767","https://openalex.org/I4210096427","https://openalex.org/I4210138220"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"N. Girard","raw_affiliation_strings":["Institut de Neurosciences de la Timone, Aix-Marseille Univ, UMR CNRS,Marseille,France,7289"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institut de Neurosciences de la Timone, Aix-Marseille Univ, UMR CNRS,Marseille,France,7289","institution_ids":["https://openalex.org/I4210138220","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5018872523","display_name":"O. Coulon","orcid":null},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I4210138220","display_name":"Institut de Neurosciences de la Timone","ror":"https://ror.org/043hw6336","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I21491767","https://openalex.org/I4210096427","https://openalex.org/I4210138220"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"O. Coulon","raw_affiliation_strings":["Institut de Neurosciences de la Timone, Aix-Marseille Univ, UMR CNRS,Marseille,France,7289"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institut de Neurosciences de la Timone, Aix-Marseille Univ, UMR CNRS,Marseille,France,7289","institution_ids":["https://openalex.org/I4210138220","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5136546422","display_name":"F. Rousseau","orcid":null},"institutions":[{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I4210127572","display_name":"IMT Atlantique","ror":"https://ror.org/030hj3061","country_code":"FR","type":"education","lineage":["https://openalex.org/I205703379","https://openalex.org/I4210127572"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"F. Rousseau","raw_affiliation_strings":["IMT Atlantique, LaTIM U1101 INSERM,Brest,France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"IMT Atlantique, LaTIM U1101 INSERM,Brest,France","institution_ids":["https://openalex.org/I4210127572","https://openalex.org/I154526488"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5128265537","display_name":"G Auzias","orcid":null},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I4210138220","display_name":"Institut de Neurosciences de la Timone","ror":"https://ror.org/043hw6336","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I21491767","https://openalex.org/I4210096427","https://openalex.org/I4210138220"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"G. Auzias","raw_affiliation_strings":["Institut de Neurosciences de la Timone, Aix-Marseille Univ, UMR CNRS,Marseille,France,7289"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institut de Neurosciences de la Timone, Aix-Marseille Univ, UMR CNRS,Marseille,France,7289","institution_ids":["https://openalex.org/I4210138220","https://openalex.org/I1294671590"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.80984885,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"1","last_page":"4"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11184","display_name":"Neonatal and fetal brain pathology","score":0.28859999775886536,"subfield":{"id":"https://openalex.org/subfields/2735","display_name":"Pediatrics, Perinatology and Child Health"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T11184","display_name":"Neonatal and fetal brain pathology","score":0.28859999775886536,"subfield":{"id":"https://openalex.org/subfields/2735","display_name":"Pediatrics, Perinatology and Child Health"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T12552","display_name":"Fetal and Pediatric Neurological Disorders","score":0.15940000116825104,"subfield":{"id":"https://openalex.org/subfields/2735","display_name":"Pediatrics, Perinatology and Child Health"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11290","display_name":"Preterm Birth and Chorioamnionitis","score":0.0835999995470047,"subfield":{"id":"https://openalex.org/subfields/2713","display_name":"Epidemiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.597100019454956},{"id":"https://openalex.org/keywords/diffusion","display_name":"Diffusion","score":0.30660000443458557},{"id":"https://openalex.org/keywords/noise","display_name":"Noise (video)","score":0.2727000117301941},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.2676999866962433},{"id":"https://openalex.org/keywords/automated-method","display_name":"Automated method","score":0.2619999945163727}],"concepts":[{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.597100019454956},{"id":"https://openalex.org/C136229726","wikidata":"https://www.wikidata.org/wiki/Q327092","display_name":"Biomedical engineering","level":1,"score":0.4124999940395355},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.40880000591278076},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3684999942779541},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.32499998807907104},{"id":"https://openalex.org/C69357855","wikidata":"https://www.wikidata.org/wiki/Q163214","display_name":"Diffusion","level":2,"score":0.30660000443458557},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.27309998869895935},{"id":"https://openalex.org/C99498987","wikidata":"https://www.wikidata.org/wiki/Q2210247","display_name":"Noise (video)","level":3,"score":0.2727000117301941},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.2676999866962433},{"id":"https://openalex.org/C3019060180","wikidata":"https://www.wikidata.org/wiki/Q184199","display_name":"Automated method","level":2,"score":0.2619999945163727},{"id":"https://openalex.org/C175309249","wikidata":"https://www.wikidata.org/wiki/Q725864","display_name":"Pipeline transport","level":2,"score":0.26019999384880066},{"id":"https://openalex.org/C115901376","wikidata":"https://www.wikidata.org/wiki/Q184199","display_name":"Automation","level":2,"score":0.2542000114917755},{"id":"https://openalex.org/C2776401178","wikidata":"https://www.wikidata.org/wiki/Q12050496","display_name":"Feature (linguistics)","level":2,"score":0.25380000472068787}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/isbi61048.2026.11516021","is_oa":false,"landing_page_url":"https://doi.org/10.1109/isbi61048.2026.11516021","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2026 IEEE 23rd International Symposium on Biomedical Imaging (ISBI)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":8,"referenced_works":["https://openalex.org/W2127309075","https://openalex.org/W2805284222","https://openalex.org/W2972472628","https://openalex.org/W3092977578","https://openalex.org/W3172416413","https://openalex.org/W4400222189","https://openalex.org/W4400578804","https://openalex.org/W4405896372"],"related_works":[],"abstract_inverted_index":{"In":[0],"this":[1],"work,":[2],"we":[3],"present":[4],"an":[5,105],"automated":[6],"pipeline":[7,101,131],"for":[8,63,111],"processing":[9],"diffusion":[10,97,144],"MRI":[11],"(dMRI)":[12],"data":[13],"acquired":[14],"in":[15,17,44,72],"fetuses":[16],"clinical":[18,46,74,88,124],"routine.":[19],"In-vivo":[20],"fetal":[21,89,114],"dMRI":[22],"provides":[23],"critical":[24],"insight":[25],"into":[26],"brain":[27],"development":[28],"but":[29],"is":[30,102,170],"challenging":[31],"due":[32],"to":[33,86,121],"motion,":[34],"low":[35],"SNR":[36],"ratio,":[37],"and":[38,96,166],"artifacts.":[39],"These":[40],"challenges":[41],"are":[42,61,69],"prominent":[43],"the":[45,52,55,112,130,142,147,151,163],"routine,":[47],"with":[48,150,159],"additional":[49],"constraints":[50],"on":[51],"duration":[53],"of":[54,108],"scanning":[56],"session.":[57],"Existing":[58],"state-of-the-art":[59],"pipelines":[60],"designed":[62],"high-quality":[64],"research":[65],"acquisition":[66],"protocols":[67],"that":[68,81],"not":[70],"feasible":[71],"routine":[73],"practice.":[75],"We":[76],"introduce":[77],"a":[78,122],"comprehensive":[79],"framework":[80],"integrates":[82],"robust":[83],"opensource":[84],"tools":[85],"handle":[87],"dMRI,":[90],"performing":[91],"motion":[92],"correction,":[93],"anatomical":[94,109],"standardization,":[95],"tensor":[98],"estimation.":[99],"The":[100,168],"complemented":[103],"by":[104],"extended":[106],"set":[107],"parcellations":[110],"dHCP":[113],"atlas,":[115],"enabling":[116],"detailed":[117],"regional":[118],"analysis.":[119],"Applied":[120],"large":[123],"cohort":[125],"(<tex":[126],"xmlns:mml=\"http://www.w3.org/1998/Math/MathML\"":[127],"xmlns:xlink=\"http://www.w3.org/1999/xlink\">$\\mathrm{N}=314$</tex>":[128],"sessions),":[129],"successfully":[132],"processed":[133],"all":[134],"datasets":[135,149],"without":[136],"manual":[137],"intervention.":[138],"Following":[139],"quality":[140,153],"control,":[141],"resulting":[143],"metrics":[145],"from":[146],"152":[148],"best":[152],"score":[154],"revealed":[155],"developmental":[156],"trajectories":[157],"consistent":[158],"established":[160],"literature,":[161],"demonstrating":[162],"pipeline's":[164],"validity":[165],"robustness.":[167],"code":[169],"available":[171],"at":[172],"https://github.com/MecaLab/Fetal_DWI.":[173]},"counts_by_year":[],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2026-05-21T00:00:00"}
