{"id":"https://openalex.org/W7161843216","doi":"https://doi.org/10.1109/isbi61048.2026.11515895","title":"Bonnet: Ultra-Fast Whole-Body Bone Segmentation from CT Scans","display_name":"Bonnet: Ultra-Fast Whole-Body Bone Segmentation from CT Scans","publication_year":2026,"publication_date":"2026-04-08","ids":{"openalex":"https://openalex.org/W7161843216","doi":"https://doi.org/10.1109/isbi61048.2026.11515895"},"language":null,"primary_location":{"id":"doi:10.1109/isbi61048.2026.11515895","is_oa":false,"landing_page_url":"https://doi.org/10.1109/isbi61048.2026.11515895","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2026 IEEE 23rd International Symposium on Biomedical Imaging (ISBI)","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5112646739","display_name":"Hanjiang Zhu","orcid":null},"institutions":[{"id":"https://openalex.org/I3017910207","display_name":"Natural Resources Institute Finland","ror":"https://ror.org/02hb7bm88","country_code":"FI","type":"government","lineage":["https://openalex.org/I3017910207","https://openalex.org/I4210153464"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Hanjiang Zhu","raw_affiliation_strings":["ELLIS Institute Finland,Finland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"ELLIS Institute Finland,Finland","institution_ids":["https://openalex.org/I3017910207"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5124871482","display_name":"Pedro Martelleto Rezende","orcid":null},"institutions":[{"id":"https://openalex.org/I35440088","display_name":"ETH Zurich","ror":"https://ror.org/05a28rw58","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I35440088"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Pedro Martelleto Rezende","raw_affiliation_strings":["ETH Zurich,Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"ETH Zurich,Switzerland","institution_ids":["https://openalex.org/I35440088"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5124820733","display_name":"Zhang Yang","orcid":null},"institutions":[{"id":"https://openalex.org/I129708740","display_name":"Fujian Medical University","ror":"https://ror.org/050s6ns64","country_code":"CN","type":"education","lineage":["https://openalex.org/I129708740"]},{"id":"https://openalex.org/I4210153515","display_name":"Union Hospital","ror":"https://ror.org/0516c4k86","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210153515"]},{"id":"https://openalex.org/I4210163933","display_name":"Union Hospital","ror":"https://ror.org/055gkcy74","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210163933"]}],"countries":["CN","US"],"is_corresponding":false,"raw_author_name":"Zhang Yang","raw_affiliation_strings":["Fujian Medical University Union Hospital,China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Fujian Medical University Union Hospital,China","institution_ids":["https://openalex.org/I129708740","https://openalex.org/I4210153515","https://openalex.org/I4210163933"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007217510","display_name":"Tong Ye","orcid":"https://orcid.org/0000-0003-1017-6969"},"institutions":[{"id":"https://openalex.org/I8078737","display_name":"Clemson University","ror":"https://ror.org/037s24f05","country_code":"US","type":"education","lineage":["https://openalex.org/I8078737"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Tong Ye","raw_affiliation_strings":["Clemson University,USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Clemson University,USA","institution_ids":["https://openalex.org/I8078737"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5136512081","display_name":"Bruce Z. Gao","orcid":null},"institutions":[{"id":"https://openalex.org/I8078737","display_name":"Clemson University","ror":"https://ror.org/037s24f05","country_code":"US","type":"education","lineage":["https://openalex.org/I8078737"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Bruce Z. Gao","raw_affiliation_strings":["Clemson University,USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Clemson University,USA","institution_ids":["https://openalex.org/I8078737"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5136512199","display_name":"Feng Luo","orcid":null},"institutions":[{"id":"https://openalex.org/I8078737","display_name":"Clemson University","ror":"https://ror.org/037s24f05","country_code":"US","type":"education","lineage":["https://openalex.org/I8078737"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Feng Luo","raw_affiliation_strings":["Clemson University,USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Clemson University,USA","institution_ids":["https://openalex.org/I8078737"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021639720","display_name":"Siyu Huang","orcid":"https://orcid.org/0000-0002-2929-0115"},"institutions":[{"id":"https://openalex.org/I8078737","display_name":"Clemson University","ror":"https://ror.org/037s24f05","country_code":"US","type":"education","lineage":["https://openalex.org/I8078737"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Siyu Huang","raw_affiliation_strings":["Clemson University,USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Clemson University,USA","institution_ids":["https://openalex.org/I8078737"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5136610871","display_name":"Jiancheng Yang","orcid":null},"institutions":[{"id":"https://openalex.org/I3017910207","display_name":"Natural Resources Institute Finland","ror":"https://ror.org/02hb7bm88","country_code":"FI","type":"government","lineage":["https://openalex.org/I3017910207","https://openalex.org/I4210153464"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Jiancheng Yang","raw_affiliation_strings":["ELLIS Institute Finland,Finland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"ELLIS Institute Finland,Finland","institution_ids":["https://openalex.org/I3017910207"]}]}],"institutions":[],"countries_distinct_count":4,"institutions_distinct_count":6,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"1","last_page":"4"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12386","display_name":"Advanced X-ray and CT Imaging","score":0.27810001373291016,"subfield":{"id":"https://openalex.org/subfields/2204","display_name":"Biomedical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T12386","display_name":"Advanced X-ray and CT Imaging","score":0.27810001373291016,"subfield":{"id":"https://openalex.org/subfields/2204","display_name":"Biomedical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T14510","display_name":"Medical Imaging and Analysis","score":0.19089999794960022,"subfield":{"id":"https://openalex.org/subfields/2204","display_name":"Biomedical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11363","display_name":"Dental Radiography and Imaging","score":0.07259999960660934,"subfield":{"id":"https://openalex.org/subfields/3504","display_name":"Oral Surgery"},"field":{"id":"https://openalex.org/fields/35","display_name":"Dentistry"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computed-tomography","display_name":"Computed tomography","score":0.3474999964237213},{"id":"https://openalex.org/keywords/medical-imaging","display_name":"Medical imaging","score":0.2992999851703644},{"id":"https://openalex.org/keywords/segmentation","display_name":"Segmentation","score":0.2888999879360199},{"id":"https://openalex.org/keywords/image-segmentation","display_name":"Image segmentation","score":0.25870001316070557}],"concepts":[{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.5360000133514404},{"id":"https://openalex.org/C2989005","wikidata":"https://www.wikidata.org/wiki/Q214963","display_name":"Nuclear medicine","level":1,"score":0.4016000032424927},{"id":"https://openalex.org/C126838900","wikidata":"https://www.wikidata.org/wiki/Q77604","display_name":"Radiology","level":1,"score":0.3560999929904938},{"id":"https://openalex.org/C544519230","wikidata":"https://www.wikidata.org/wiki/Q32566","display_name":"Computed tomography","level":2,"score":0.3474999964237213},{"id":"https://openalex.org/C31601959","wikidata":"https://www.wikidata.org/wiki/Q931309","display_name":"Medical imaging","level":2,"score":0.2992999851703644},{"id":"https://openalex.org/C89600930","wikidata":"https://www.wikidata.org/wiki/Q1423946","display_name":"Segmentation","level":2,"score":0.2888999879360199},{"id":"https://openalex.org/C124504099","wikidata":"https://www.wikidata.org/wiki/Q56933","display_name":"Image segmentation","level":3,"score":0.25870001316070557},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.22939999401569366},{"id":"https://openalex.org/C163716698","wikidata":"https://www.wikidata.org/wiki/Q841267","display_name":"Tomography","level":2,"score":0.22540000081062317},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.22509999573230743}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/isbi61048.2026.11515895","is_oa":false,"landing_page_url":"https://doi.org/10.1109/isbi61048.2026.11515895","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2026 IEEE 23rd International Symposium on Biomedical Imaging (ISBI)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320320924","display_name":"Schweizerischer Nationalfonds zur F\u00f6rderung der Wissenschaftlichen Forschung","ror":"https://ror.org/00yjd3n13"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":16,"referenced_works":["https://openalex.org/W2023667179","https://openalex.org/W2963057320","https://openalex.org/W2963182550","https://openalex.org/W3008105217","https://openalex.org/W3014974815","https://openalex.org/W3109154950","https://openalex.org/W3155710154","https://openalex.org/W3201155976","https://openalex.org/W4229448187","https://openalex.org/W4377564329","https://openalex.org/W4386590633","https://openalex.org/W4388761131","https://openalex.org/W4399974507","https://openalex.org/W4403213329","https://openalex.org/W4409183097","https://openalex.org/W7124871189"],"related_works":[],"abstract_inverted_index":{"This":[0],"work":[1],"proposes":[2],"Bonnet,":[3],"an":[4,112],"ultra-fast":[5],"sparse-volume":[6],"pipeline":[7],"for":[8,20],"whole-body":[9],"bone":[10,16,65],"segmentation":[11,17],"from":[12],"CT":[13],"scans.":[14],"Accurate":[15],"is":[18],"important":[19],"surgical":[21],"planning":[22],"and":[23,34,39,74,84,92,101,139,144],"anatomical":[24],"analysis,":[25],"but":[26,125],"existing":[27],"3D":[28],"voxel-based":[29],"models":[30,146],"such":[31],"as":[32],"nnU-Net":[33],"STU-Net":[35],"require":[36],"heavy":[37],"computation":[38],"often":[40],"take":[41],"several":[42],"minutes":[43],"per":[44,109],"scan,":[45],"which":[46],"limits":[47],"time-critical":[48],"use.":[49],"The":[50,142],"proposed":[51],"Bonnet":[52,94,120],"addresses":[53],"this":[54],"by":[55,129],"integrating":[56],"a":[57,70,78,122],"series":[58],"of":[59],"novel":[60],"framework":[61],"components":[62],"including":[63],"HU-based":[64],"thresholding,":[66],"patch-wise":[67],"inference":[68,127],"with":[69],"sparse":[71],"spconv-based":[72],"U-Net,":[73],"multi-window":[75],"fusion":[76],"into":[77],"full-volume":[79],"prediction.":[80],"Trained":[81],"on":[82,89,111,135],"TotalSegmentator":[83],"evaluated":[85],"without":[86],"additional":[87],"tuning":[88],"RibSeg,":[90],"CT-Pelvic1K,":[91],"CT-Spine1K,":[93],"achieves":[95],"high":[96],"Dice":[97],"across":[98],"ribs,":[99],"pelvis,":[100],"spine":[102],"while":[103],"running":[104],"in":[105],"only":[106],"2.69":[107],"seconds":[108],"scan":[110],"RTX":[113],"A6000.":[114],"Compared":[115],"to":[116],"strong":[117],"voxel":[118],"baselines,":[119],"attains":[121],"similar":[123],"accuracy":[124],"reduces":[126],"time":[128],"roughly":[130],"<tex":[131],"xmlns:mml=\"http://www.w3.org/1998/Math/MathML\"":[132],"xmlns:xlink=\"http://www.w3.org/1999/xlink\">$25":[133],"\\times$</tex>":[134],"the":[136],"same":[137],"hardware":[138],"tiling":[140],"setup.":[141],"toolkit":[143],"pre-trained":[145],"will":[147],"be":[148],"released":[149],"at":[150],"https://github.com/HINTLab/Bonnet.":[151]},"counts_by_year":[],"updated_date":"2026-07-22T07:51:19.307946","created_date":"2026-05-21T00:00:00"}
