{"id":"https://openalex.org/W7161753756","doi":"https://doi.org/10.1109/isbi61048.2026.11515598","title":"Toward Efficient End-to-End VEM Processing Using a Unified Agent on GPUs and NPUs","display_name":"Toward Efficient End-to-End VEM Processing Using a Unified Agent on GPUs and NPUs","publication_year":2026,"publication_date":"2026-04-08","ids":{"openalex":"https://openalex.org/W7161753756","doi":"https://doi.org/10.1109/isbi61048.2026.11515598"},"language":null,"primary_location":{"id":"doi:10.1109/isbi61048.2026.11515598","is_oa":false,"landing_page_url":"https://doi.org/10.1109/isbi61048.2026.11515598","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2026 IEEE 23rd International Symposium on Biomedical Imaging (ISBI)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5136521734","display_name":"Haowen Xiao","orcid":null},"institutions":[{"id":"https://openalex.org/I2802148028","display_name":"Guangzhou Institutes of Biomedicine and Health","ror":"https://ror.org/02c31t502","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I2802148028"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Haowen Xiao","raw_affiliation_strings":["Guangzhou Institutes of Biomedicine and Health, Chinese Academy of Sciences,China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Guangzhou Institutes of Biomedicine and Health, Chinese Academy of Sciences,China","institution_ids":["https://openalex.org/I2802148028"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100652775","display_name":"Danyang Chen","orcid":"https://orcid.org/0000-0002-1142-3549"},"institutions":[{"id":"https://openalex.org/I2802148028","display_name":"Guangzhou Institutes of Biomedicine and Health","ror":"https://ror.org/02c31t502","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I2802148028"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Danyang Chen","raw_affiliation_strings":["Guangzhou Institutes of Biomedicine and Health, Chinese Academy of Sciences,China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Guangzhou Institutes of Biomedicine and Health, Chinese Academy of Sciences,China","institution_ids":["https://openalex.org/I2802148028"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5122151043","display_name":"Ziqian Guan","orcid":null},"institutions":[{"id":"https://openalex.org/I2802148028","display_name":"Guangzhou Institutes of Biomedicine and Health","ror":"https://ror.org/02c31t502","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I2802148028"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ziqian Guan","raw_affiliation_strings":["Guangzhou Institutes of Biomedicine and Health, Chinese Academy of Sciences,China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Guangzhou Institutes of Biomedicine and Health, Chinese Academy of Sciences,China","institution_ids":["https://openalex.org/I2802148028"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5123455053","display_name":"Xiangcheng Bao","orcid":null},"institutions":[{"id":"https://openalex.org/I2802148028","display_name":"Guangzhou Institutes of Biomedicine and Health","ror":"https://ror.org/02c31t502","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I2802148028"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiangcheng Bao","raw_affiliation_strings":["Guangzhou Institutes of Biomedicine and Health, Chinese Academy of Sciences,China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Guangzhou Institutes of Biomedicine and Health, Chinese Academy of Sciences,China","institution_ids":["https://openalex.org/I2802148028"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5136511330","display_name":"Fangnan Xie","orcid":null},"institutions":[{"id":"https://openalex.org/I2802148028","display_name":"Guangzhou Institutes of Biomedicine and Health","ror":"https://ror.org/02c31t502","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I2802148028"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Fangnan Xie","raw_affiliation_strings":["Guangzhou Institutes of Biomedicine and Health, Chinese Academy of Sciences,China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Guangzhou Institutes of Biomedicine and Health, Chinese Academy of Sciences,China","institution_ids":["https://openalex.org/I2802148028"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048188910","display_name":"J ZHU","orcid":null},"institutions":[{"id":"https://openalex.org/I2802148028","display_name":"Guangzhou Institutes of Biomedicine and Health","ror":"https://ror.org/02c31t502","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I2802148028"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jiarui Zhu","raw_affiliation_strings":["Guangzhou Institutes of Biomedicine and Health, Chinese Academy of Sciences,China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Guangzhou Institutes of Biomedicine and Health, Chinese Academy of Sciences,China","institution_ids":["https://openalex.org/I2802148028"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5136580383","display_name":"Jiayin Liang","orcid":null},"institutions":[{"id":"https://openalex.org/I2802148028","display_name":"Guangzhou Institutes of Biomedicine and Health","ror":"https://ror.org/02c31t502","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I2802148028"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jiayin Liang","raw_affiliation_strings":["Guangzhou Institutes of Biomedicine and Health, Chinese Academy of Sciences,China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Guangzhou Institutes of Biomedicine and Health, Chinese Academy of Sciences,China","institution_ids":["https://openalex.org/I2802148028"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5136580600","display_name":"Binqian Zou","orcid":null},"institutions":[{"id":"https://openalex.org/I2802148028","display_name":"Guangzhou Institutes of Biomedicine and Health","ror":"https://ror.org/02c31t502","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I2802148028"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Binqian Zou","raw_affiliation_strings":["Guangzhou Institutes of Biomedicine and Health, Chinese Academy of Sciences,China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Guangzhou Institutes of Biomedicine and Health, Chinese Academy of Sciences,China","institution_ids":["https://openalex.org/I2802148028"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035095027","display_name":"Jiali Guan","orcid":null},"institutions":[{"id":"https://openalex.org/I2802148028","display_name":"Guangzhou Institutes of Biomedicine and Health","ror":"https://ror.org/02c31t502","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I2802148028"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jiali Guan","raw_affiliation_strings":["Guangzhou Institutes of Biomedicine and Health, Chinese Academy of Sciences,China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Guangzhou Institutes of Biomedicine and Health, Chinese Academy of Sciences,China","institution_ids":["https://openalex.org/I2802148028"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5085698173","display_name":"Ye Lu","orcid":"https://orcid.org/0000-0002-2376-4519"},"institutions":[{"id":"https://openalex.org/I2802148028","display_name":"Guangzhou Institutes of Biomedicine and Health","ror":"https://ror.org/02c31t502","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I2802148028"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yanrui Lu","raw_affiliation_strings":["Guangzhou Institutes of Biomedicine and Health, Chinese Academy of Sciences,China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Guangzhou Institutes of Biomedicine and Health, Chinese Academy of Sciences,China","institution_ids":["https://openalex.org/I2802148028"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5136542190","display_name":"Chongyi Wang","orcid":null},"institutions":[{"id":"https://openalex.org/I2802148028","display_name":"Guangzhou Institutes of Biomedicine and Health","ror":"https://ror.org/02c31t502","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I2802148028"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Chongyi Wang","raw_affiliation_strings":["Guangzhou Institutes of Biomedicine and Health, Chinese Academy of Sciences,China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Guangzhou Institutes of Biomedicine and Health, Chinese Academy of Sciences,China","institution_ids":["https://openalex.org/I2802148028"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5136599352","display_name":"Yuting Wang","orcid":null},"institutions":[{"id":"https://openalex.org/I2802148028","display_name":"Guangzhou Institutes of Biomedicine and Health","ror":"https://ror.org/02c31t502","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I2802148028"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yuting Wang","raw_affiliation_strings":["Guangzhou Institutes of Biomedicine and Health, Chinese Academy of Sciences,China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Guangzhou Institutes of Biomedicine and Health, Chinese Academy of Sciences,China","institution_ids":["https://openalex.org/I2802148028"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5123251886","display_name":"Fukang Ge","orcid":null},"institutions":[{"id":"https://openalex.org/I2802148028","display_name":"Guangzhou Institutes of Biomedicine and Health","ror":"https://ror.org/02c31t502","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I2802148028"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Fukang Ge","raw_affiliation_strings":["Guangzhou Institutes of Biomedicine and Health, Chinese Academy of Sciences,China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Guangzhou Institutes of Biomedicine and Health, Chinese Academy of Sciences,China","institution_ids":["https://openalex.org/I2802148028"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016680184","display_name":"Lin Gu","orcid":"https://orcid.org/0000-0002-7504-031X"},"institutions":[{"id":"https://openalex.org/I201537933","display_name":"Tohoku University","ror":"https://ror.org/01dq60k83","country_code":"JP","type":"education","lineage":["https://openalex.org/I201537933"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Lin Gu","raw_affiliation_strings":["Tohoku University,Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Tohoku University,Japan","institution_ids":["https://openalex.org/I201537933"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008588161","display_name":"Jinhao Bi","orcid":"https://orcid.org/0000-0001-9746-0270"},"institutions":[{"id":"https://openalex.org/I3133055985","display_name":"Westlake University","ror":"https://ror.org/05hfa4n20","country_code":"CN","type":"education","lineage":["https://openalex.org/I3133055985"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jinhao Bi","raw_affiliation_strings":["Westlake University,China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Westlake University,China","institution_ids":["https://openalex.org/I3133055985"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5136541323","display_name":"Jun He","orcid":null},"institutions":[{"id":"https://openalex.org/I2802148028","display_name":"Guangzhou Institutes of Biomedicine and Health","ror":"https://ror.org/02c31t502","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I2802148028"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jun He","raw_affiliation_strings":["Guangzhou Institutes of Biomedicine and Health, Chinese Academy of Sciences,China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Guangzhou Institutes of Biomedicine and Health, Chinese Academy of Sciences,China","institution_ids":["https://openalex.org/I2802148028"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5101747909","display_name":"Yingying Zhu","orcid":"https://orcid.org/0000-0001-7312-8302"},"institutions":[{"id":"https://openalex.org/I2802148028","display_name":"Guangzhou Institutes of Biomedicine and Health","ror":"https://ror.org/02c31t502","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I2802148028"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yingying Zhu","raw_affiliation_strings":["Guangzhou Institutes of Biomedicine and Health, Chinese Academy of Sciences,China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Guangzhou Institutes of Biomedicine and Health, Chinese Academy of Sciences,China","institution_ids":["https://openalex.org/I2802148028"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":17,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.79820925,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"1","last_page":"5"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10054","display_name":"Parallel Computing and Optimization Techniques","score":0.03830000013113022,"subfield":{"id":"https://openalex.org/subfields/1708","display_name":"Hardware and Architecture"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10054","display_name":"Parallel Computing and Optimization Techniques","score":0.03830000013113022,"subfield":{"id":"https://openalex.org/subfields/1708","display_name":"Hardware and Architecture"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12692","display_name":"Magnetic Field Sensors Techniques","score":0.02630000002682209,"subfield":{"id":"https://openalex.org/subfields/2208","display_name":"Electrical and Electronic Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10572","display_name":"Geophysical and Geoelectrical Methods","score":0.020899999886751175,"subfield":{"id":"https://openalex.org/subfields/1908","display_name":"Geophysics"},"field":{"id":"https://openalex.org/fields/19","display_name":"Earth and Planetary Sciences"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.2700999975204468},{"id":"https://openalex.org/keywords/component","display_name":"Component (thermodynamics)","score":0.26080000400543213},{"id":"https://openalex.org/keywords/data-processing","display_name":"Data processing","score":0.25040000677108765},{"id":"https://openalex.org/keywords/key","display_name":"Key (lock)","score":0.24899999797344208}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7005000114440918},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.3188000023365021},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.2854999899864197},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2761000096797943},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.2700999975204468},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.26089999079704285},{"id":"https://openalex.org/C168167062","wikidata":"https://www.wikidata.org/wiki/Q1117970","display_name":"Component (thermodynamics)","level":2,"score":0.26080000400543213},{"id":"https://openalex.org/C138827492","wikidata":"https://www.wikidata.org/wiki/Q6661985","display_name":"Data processing","level":2,"score":0.25040000677108765},{"id":"https://openalex.org/C26517878","wikidata":"https://www.wikidata.org/wiki/Q228039","display_name":"Key (lock)","level":2,"score":0.24899999797344208},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.24320000410079956}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/isbi61048.2026.11515598","is_oa":false,"landing_page_url":"https://doi.org/10.1109/isbi61048.2026.11515598","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2026 IEEE 23rd International Symposium on Biomedical Imaging (ISBI)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":10,"referenced_works":["https://openalex.org/W2026140461","https://openalex.org/W2163314583","https://openalex.org/W2625278673","https://openalex.org/W4284707300","https://openalex.org/W4284988743","https://openalex.org/W4385283815","https://openalex.org/W4392239148","https://openalex.org/W4400526950","https://openalex.org/W4403782737","https://openalex.org/W4410831018"],"related_works":[],"abstract_inverted_index":{"Traditional":[0],"volumetric":[1],"electron":[2],"microscopy":[3],"(VEM)":[4],"workflows":[5],"fragment":[6],"stitching,":[7],"alignment,":[8],"registration,":[9],"and":[10,19,23,35],"reconstruction":[11],"across":[12],"separate":[13],"tools,":[14],"demanding":[15],"heavy":[16],"manual":[17,108],"supervision":[18],"yielding":[20],"low":[21],"throughput":[22],"inconsistency.":[24],"VEM":[25,66],"data":[26],"further":[27],"suffer":[28],"from":[29],"non-linear":[30],"deformation,":[31],"section":[32],"loss,":[33],"corruption,":[34],"illumination":[36],"drift,":[37],"while":[38],"registration":[39],"is":[40,90],"slow":[41],"due":[42],"to":[43,101],"the":[44,54],"large":[45],"image":[46],"size.":[47],"To":[48],"address":[49],"these":[50],"challenges,":[51],"we":[52],"introduce":[53],"End-to-End":[55],"EM":[56],"Analysis":[57],"Agent,":[58],"an":[59],"LLM-driven":[60],"framework":[61,89],"that":[62],"unifies":[63],"all":[64],"major":[65],"stages":[67],"into":[68],"a":[69],"single":[70],"automated":[71],"pipeline.":[72],"By":[73],"combining":[74],"hierarchical":[75],"deformation":[76],"correction":[77],"with":[78,96],"context-aware":[79],"slice":[80],"recovery,":[81],"it":[82],"produces":[83],"structurally":[84],"coherent,":[85],"high-fidelity":[86],"volumes.":[87],"The":[88],"optimized":[91],"for":[92],"Huawei":[93],"CPU/NPU":[94],"platforms":[95],"parallel":[97],"acceleration,":[98],"achieving":[99],"up":[100],"<tex":[102],"xmlns:mml=\"http://www.w3.org/1998/Math/MathML\"":[103],"xmlns:xlink=\"http://www.w3.org/1999/xlink\">$10":[104],"\\times$</tex>":[105],"speedups":[106],"over":[107],"workflows.":[109]},"counts_by_year":[],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2026-05-21T00:00:00"}
