{"id":"https://openalex.org/W4410295112","doi":"https://doi.org/10.1109/isbi60581.2025.10981016","title":"Stain Imputation in Multiplex Immunofluorescence Imaging (SIMIF) Based on Random Channel-Wise Masking","display_name":"Stain Imputation in Multiplex Immunofluorescence Imaging (SIMIF) Based on Random Channel-Wise Masking","publication_year":2025,"publication_date":"2025-04-14","ids":{"openalex":"https://openalex.org/W4410295112","doi":"https://doi.org/10.1109/isbi60581.2025.10981016"},"language":"en","primary_location":{"id":"doi:10.1109/isbi60581.2025.10981016","is_oa":false,"landing_page_url":"https://doi.org/10.1109/isbi60581.2025.10981016","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2025 IEEE 22nd International Symposium on Biomedical Imaging (ISBI)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5060041080","display_name":"Xingnan Li","orcid":"https://orcid.org/0000-0002-1208-8658"},"institutions":[{"id":"https://openalex.org/I99043593","display_name":"Macquarie University","ror":"https://ror.org/01sf06y89","country_code":"AU","type":"education","lineage":["https://openalex.org/I99043593"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Xingnan Li","raw_affiliation_strings":["Macquarie University,Centre for Health Informatics,Sydney,NSW,Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Macquarie University,Centre for Health Informatics,Sydney,NSW,Australia","institution_ids":["https://openalex.org/I99043593"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035307407","display_name":"Priyanka Rana","orcid":"https://orcid.org/0000-0001-6468-8236"},"institutions":[{"id":"https://openalex.org/I99043593","display_name":"Macquarie University","ror":"https://ror.org/01sf06y89","country_code":"AU","type":"education","lineage":["https://openalex.org/I99043593"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Priyanka Rana","raw_affiliation_strings":["Macquarie University,Centre for Health Informatics,Sydney,NSW,Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Macquarie University,Centre for Health Informatics,Sydney,NSW,Australia","institution_ids":["https://openalex.org/I99043593"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5030883672","display_name":"Tuba N. Gide","orcid":"https://orcid.org/0000-0003-2473-5565"},"institutions":[{"id":"https://openalex.org/I129604602","display_name":"The University of Sydney","ror":"https://ror.org/0384j8v12","country_code":"AU","type":"education","lineage":["https://openalex.org/I129604602"]},{"id":"https://openalex.org/I4210118383","display_name":"Melanoma Institute Australia","ror":"https://ror.org/02jxrhq31","country_code":"AU","type":"nonprofit","lineage":["https://openalex.org/I4210118383"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Tuba N Gide","raw_affiliation_strings":["Melanoma Institute Australia, The University of Sydney,Sydney,NSW,Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Melanoma Institute Australia, The University of Sydney,Sydney,NSW,Australia","institution_ids":["https://openalex.org/I4210118383","https://openalex.org/I129604602"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054091828","display_name":"Nurudeen A. Adegoke","orcid":"https://orcid.org/0000-0001-7592-5460"},"institutions":[{"id":"https://openalex.org/I129604602","display_name":"The University of Sydney","ror":"https://ror.org/0384j8v12","country_code":"AU","type":"education","lineage":["https://openalex.org/I129604602"]},{"id":"https://openalex.org/I4210118383","display_name":"Melanoma Institute Australia","ror":"https://ror.org/02jxrhq31","country_code":"AU","type":"nonprofit","lineage":["https://openalex.org/I4210118383"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Nurudeen A Adegoke","raw_affiliation_strings":["Melanoma Institute Australia, The University of Sydney,Sydney,NSW,Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Melanoma Institute Australia, The University of Sydney,Sydney,NSW,Australia","institution_ids":["https://openalex.org/I4210118383","https://openalex.org/I129604602"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015091683","display_name":"Yizhe Mao","orcid":"https://orcid.org/0000-0003-1863-512X"},"institutions":[{"id":"https://openalex.org/I129604602","display_name":"The University of Sydney","ror":"https://ror.org/0384j8v12","country_code":"AU","type":"education","lineage":["https://openalex.org/I129604602"]},{"id":"https://openalex.org/I4210118383","display_name":"Melanoma Institute Australia","ror":"https://ror.org/02jxrhq31","country_code":"AU","type":"nonprofit","lineage":["https://openalex.org/I4210118383"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Yizhe Mao","raw_affiliation_strings":["Melanoma Institute Australia, The University of Sydney,Sydney,NSW,Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Melanoma Institute Australia, The University of Sydney,Sydney,NSW,Australia","institution_ids":["https://openalex.org/I4210118383","https://openalex.org/I129604602"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070576000","display_name":"Georgina V. Long","orcid":"https://orcid.org/0000-0001-8894-3545"},"institutions":[{"id":"https://openalex.org/I129604602","display_name":"The University of Sydney","ror":"https://ror.org/0384j8v12","country_code":"AU","type":"education","lineage":["https://openalex.org/I129604602"]},{"id":"https://openalex.org/I4210118383","display_name":"Melanoma Institute Australia","ror":"https://ror.org/02jxrhq31","country_code":"AU","type":"nonprofit","lineage":["https://openalex.org/I4210118383"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Georgina Long","raw_affiliation_strings":["Melanoma Institute Australia, The University of Sydney,Sydney,NSW,Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Melanoma Institute Australia, The University of Sydney,Sydney,NSW,Australia","institution_ids":["https://openalex.org/I4210118383","https://openalex.org/I129604602"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083653505","display_name":"Richard A. Scolyer","orcid":"https://orcid.org/0000-0002-8991-0013"},"institutions":[{"id":"https://openalex.org/I129604602","display_name":"The University of Sydney","ror":"https://ror.org/0384j8v12","country_code":"AU","type":"education","lineage":["https://openalex.org/I129604602"]},{"id":"https://openalex.org/I4210118383","display_name":"Melanoma Institute Australia","ror":"https://ror.org/02jxrhq31","country_code":"AU","type":"nonprofit","lineage":["https://openalex.org/I4210118383"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Richard A Scolyer","raw_affiliation_strings":["Melanoma Institute Australia, The University of Sydney,Sydney,NSW,Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Melanoma Institute Australia, The University of Sydney,Sydney,NSW,Australia","institution_ids":["https://openalex.org/I4210118383","https://openalex.org/I129604602"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5047191996","display_name":"Shlomo Berkovsky","orcid":"https://orcid.org/0000-0003-2638-4121"},"institutions":[{"id":"https://openalex.org/I99043593","display_name":"Macquarie University","ror":"https://ror.org/01sf06y89","country_code":"AU","type":"education","lineage":["https://openalex.org/I99043593"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Shlomo Berkovsky","raw_affiliation_strings":["Macquarie University,Centre for Health Informatics,Sydney,NSW,Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Macquarie University,Centre for Health Informatics,Sydney,NSW,Australia","institution_ids":["https://openalex.org/I99043593"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088581420","display_name":"Enrico Coiera","orcid":"https://orcid.org/0000-0002-6444-6584"},"institutions":[{"id":"https://openalex.org/I99043593","display_name":"Macquarie University","ror":"https://ror.org/01sf06y89","country_code":"AU","type":"education","lineage":["https://openalex.org/I99043593"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Enrico Coiera","raw_affiliation_strings":["Macquarie University,Centre for Health Informatics,Sydney,NSW,Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Macquarie University,Centre for Health Informatics,Sydney,NSW,Australia","institution_ids":["https://openalex.org/I99043593"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001606920","display_name":"James S. Wilmott","orcid":"https://orcid.org/0000-0002-6750-5244"},"institutions":[{"id":"https://openalex.org/I129604602","display_name":"The University of Sydney","ror":"https://ror.org/0384j8v12","country_code":"AU","type":"education","lineage":["https://openalex.org/I129604602"]},{"id":"https://openalex.org/I4210118383","display_name":"Melanoma Institute Australia","ror":"https://ror.org/02jxrhq31","country_code":"AU","type":"nonprofit","lineage":["https://openalex.org/I4210118383"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"James S Wilmott","raw_affiliation_strings":["Melanoma Institute Australia, The University of Sydney,Sydney,NSW,Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Melanoma Institute Australia, The University of Sydney,Sydney,NSW,Australia","institution_ids":["https://openalex.org/I4210118383","https://openalex.org/I129604602"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5013984140","display_name":"Sidong Liu","orcid":"https://orcid.org/0000-0002-2371-0713"},"institutions":[{"id":"https://openalex.org/I99043593","display_name":"Macquarie University","ror":"https://ror.org/01sf06y89","country_code":"AU","type":"education","lineage":["https://openalex.org/I99043593"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Sidong Liu","raw_affiliation_strings":["Macquarie University,Centre for Health Informatics,Sydney,NSW,Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Macquarie University,Centre for Health Informatics,Sydney,NSW,Australia","institution_ids":["https://openalex.org/I99043593"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":11,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":1.9622,"has_fulltext":false,"cited_by_count":4,"citation_normalized_percentile":{"value":0.85276806,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":95,"max":98},"biblio":{"volume":null,"issue":null,"first_page":"1","last_page":"5"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12015","display_name":"Photoacoustic and Ultrasonic Imaging","score":0.9732999801635742,"subfield":{"id":"https://openalex.org/subfields/2204","display_name":"Biomedical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T12015","display_name":"Photoacoustic and Ultrasonic Imaging","score":0.9732999801635742,"subfield":{"id":"https://openalex.org/subfields/2204","display_name":"Biomedical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12867","display_name":"Advanced Biosensing Techniques and Applications","score":0.9376999735832214,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13114","display_name":"Image Processing Techniques and Applications","score":0.9244999885559082,"subfield":{"id":"https://openalex.org/subfields/2214","display_name":"Media Technology"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/multiplex","display_name":"Multiplex","score":0.7796369194984436},{"id":"https://openalex.org/keywords/immunofluorescence","display_name":"Immunofluorescence","score":0.6027320027351379},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.49058929085731506},{"id":"https://openalex.org/keywords/stain","display_name":"Stain","score":0.4882393181324005},{"id":"https://openalex.org/keywords/masking","display_name":"Masking (illustration)","score":0.46965351700782776},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.36033979058265686},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3318291902542114},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.3270889222621918},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.16144761443138123},{"id":"https://openalex.org/keywords/staining","display_name":"Staining","score":0.13703763484954834},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.1238439679145813},{"id":"https://openalex.org/keywords/antibody","display_name":"Antibody","score":0.06565079092979431},{"id":"https://openalex.org/keywords/art","display_name":"Art","score":0.06026312708854675}],"concepts":[{"id":"https://openalex.org/C2781188995","wikidata":"https://www.wikidata.org/wiki/Q6934982","display_name":"Multiplex","level":2,"score":0.7796369194984436},{"id":"https://openalex.org/C2778236600","wikidata":"https://www.wikidata.org/wiki/Q592324","display_name":"Immunofluorescence","level":3,"score":0.6027320027351379},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.49058929085731506},{"id":"https://openalex.org/C2781294515","wikidata":"https://www.wikidata.org/wiki/Q2733470","display_name":"Stain","level":3,"score":0.4882393181324005},{"id":"https://openalex.org/C2777402240","wikidata":"https://www.wikidata.org/wiki/Q6783436","display_name":"Masking (illustration)","level":2,"score":0.46965351700782776},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.36033979058265686},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3318291902542114},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.3270889222621918},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.16144761443138123},{"id":"https://openalex.org/C74864618","wikidata":"https://www.wikidata.org/wiki/Q2332446","display_name":"Staining","level":2,"score":0.13703763484954834},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.1238439679145813},{"id":"https://openalex.org/C159654299","wikidata":"https://www.wikidata.org/wiki/Q79460","display_name":"Antibody","level":2,"score":0.06565079092979431},{"id":"https://openalex.org/C142362112","wikidata":"https://www.wikidata.org/wiki/Q735","display_name":"Art","level":0,"score":0.06026312708854675},{"id":"https://openalex.org/C153349607","wikidata":"https://www.wikidata.org/wiki/Q36649","display_name":"Visual arts","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/isbi60581.2025.10981016","is_oa":false,"landing_page_url":"https://doi.org/10.1109/isbi60581.2025.10981016","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2025 IEEE 22nd International Symposium on Biomedical Imaging (ISBI)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.7300000190734863,"id":"https://metadata.un.org/sdg/2","display_name":"Zero hunger"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320308296","display_name":"Melanoma Research Alliance","ror":"https://ror.org/025ck6r46"},{"id":"https://openalex.org/F4320334705","display_name":"National Health and Medical Research Council","ror":"https://ror.org/011kf5r70"},{"id":"https://openalex.org/F4320334715","display_name":"Cancer Council NSW","ror":"https://ror.org/05gsbkp40"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":17,"referenced_works":["https://openalex.org/W1901129140","https://openalex.org/W2019516397","https://openalex.org/W2133059825","https://openalex.org/W2912137016","https://openalex.org/W3087683890","https://openalex.org/W3096469224","https://openalex.org/W3158306799","https://openalex.org/W3176466780","https://openalex.org/W4225012828","https://openalex.org/W4280547756","https://openalex.org/W4307644744","https://openalex.org/W4367840559","https://openalex.org/W6678815747","https://openalex.org/W6729966448","https://openalex.org/W6735913928","https://openalex.org/W6741832134","https://openalex.org/W6858931373"],"related_works":["https://openalex.org/W2362517148","https://openalex.org/W2594860026","https://openalex.org/W2382509367","https://openalex.org/W2022037402","https://openalex.org/W2395884055","https://openalex.org/W3006199032","https://openalex.org/W2902762162","https://openalex.org/W2077435114","https://openalex.org/W3043695311","https://openalex.org/W4294738915"],"abstract_inverted_index":{"Recent":[0],"advances":[1],"in":[2,8,63,141,183],"digital":[3],"imaging":[4],"have":[5],"fuelled":[6],"interest":[7],"using":[9],"multiplex":[10],"immunofluorescence":[11],"(mIF)":[12],"images":[13],"to":[14,37,147],"study":[15],"multiple":[16],"biomarkers":[17,103],"and":[18,43,52,59,153,189],"their":[19],"interactions":[20],"within":[21],"a":[22,90,112,129,148,160],"single":[23],"tissue":[24],"of":[25,93,100,162],"the":[26,30,38,48,69,101,122,177],"tumour":[27],"microenvironment.":[28],"However,":[29],"mIF":[31,118,169],"data":[32],"remain":[33],"less":[34],"accessible":[35],"due":[36],"need":[39,70],"for":[40,71,117,186],"specialised":[41],"equipment":[42],"costly":[44],"reagents,":[45],"which":[46,95,120],"increases":[47],"technical":[49],"complexity,":[50],"expense":[51],"time":[53],"required.":[54],"Additionally,":[55],"issues":[56],"like":[57],"misalignment":[58],"artefacts":[60],"can":[61],"result":[62],"unusable":[64],"or":[65],"incomplete":[66],"data,":[67],"highlighting":[68],"effective":[72],"stain":[73,80,114],"imputation":[74,81,115,184],"methods.":[75],"The":[76],"current":[77,178],"state-of-the-art":[78],"(SOTA)":[79],"method":[82,116,137],"relies":[83],"on":[84,159],"supervised":[85],"generative":[86],"deep-learning":[87],"models":[88],"with":[89,128],"fixed":[91],"panel":[92],"biomarkers,":[94,145],"often":[96],"fail":[97],"when":[98],"some":[99],"required":[102],"are":[104],"absent.":[105],"To":[106],"address":[107],"this":[108],"limitation,":[109],"we":[110],"propose":[111],"novel":[113],"(SIMIF),":[119],"integrates":[121],"Wasserstein":[123],"Generative":[124],"Adversarial":[125],"Network":[126],"(GAN)":[127],"random":[130],"channel-wise":[131],"masking":[132],"(RCWM)":[133],"training":[134],"strategy.":[135],"This":[136],"effectively":[138],"enhances":[139],"robustness":[140],"handling":[142],"various":[143],"input":[144],"leading":[146],"more":[149],"stable":[150],"optimisation":[151],"process":[152],"improved":[154],"synthetic":[155],"image":[156,164],"quality.":[157],"Evaluated":[158],"dataset":[161],"33,265":[163],"patches":[165],"extracted":[166],"from":[167],"36":[168],"whole-slide":[170],"images,":[171],"SIMIF":[172],"demonstrates":[173],"clear":[174],"superiority":[175],"over":[176],"SOTA,":[179],"achieving":[180],"marked":[181],"improvements":[182],"performance":[185],"both":[187],"CD8":[188],"PD-L1":[190],"biomarkers.":[191]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":3}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
