{"id":"https://openalex.org/W4410297890","doi":"https://doi.org/10.1109/isbi60581.2025.10981011","title":"SarcNet: A Novel AI-Based Framework to Automatically Analyze and Score Sarcomere Organizations in Fluorescently Tagged HIPSC-CMS","display_name":"SarcNet: A Novel AI-Based Framework to Automatically Analyze and Score Sarcomere Organizations in Fluorescently Tagged HIPSC-CMS","publication_year":2025,"publication_date":"2025-04-14","ids":{"openalex":"https://openalex.org/W4410297890","doi":"https://doi.org/10.1109/isbi60581.2025.10981011"},"language":"en","primary_location":{"id":"doi:10.1109/isbi60581.2025.10981011","is_oa":false,"landing_page_url":"https://doi.org/10.1109/isbi60581.2025.10981011","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2025 IEEE 22nd International Symposium on Biomedical Imaging (ISBI)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5049099024","display_name":"Huyen Le","orcid":"https://orcid.org/0000-0001-9873-1669"},"institutions":[{"id":"https://openalex.org/I4210142044","display_name":"VinUniversity","ror":"https://ror.org/052dmdr17","country_code":"VN","type":"education","lineage":["https://openalex.org/I4210142044"]}],"countries":["VN"],"is_corresponding":true,"raw_author_name":"Huyen Le","raw_affiliation_strings":["College of Engineering &#x0026; Computer Science, VinUniversity"],"affiliations":[{"raw_affiliation_string":"College of Engineering &#x0026; Computer Science, VinUniversity","institution_ids":["https://openalex.org/I4210142044"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111216483","display_name":"Khiet Dang","orcid":null},"institutions":[{"id":"https://openalex.org/I177064439","display_name":"Universit\u00e9 de Bourgogne","ror":"https://ror.org/03k1bsr36","country_code":"FR","type":"education","lineage":["https://openalex.org/I177064439"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Khiet Dang","raw_affiliation_strings":["University of Burgundy,Faculty of Sciences and Technologies"],"affiliations":[{"raw_affiliation_string":"University of Burgundy,Faculty of Sciences and Technologies","institution_ids":["https://openalex.org/I177064439"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5114170719","display_name":"Tien Lai","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Tien Lai","raw_affiliation_strings":["VinUni-Illinois Smart Health Center, VinUniversity"],"affiliations":[{"raw_affiliation_string":"VinUni-Illinois Smart Health Center, VinUniversity","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5098954137","display_name":"Nhung Nguyen","orcid":null},"institutions":[{"id":"https://openalex.org/I4210142044","display_name":"VinUniversity","ror":"https://ror.org/052dmdr17","country_code":"VN","type":"education","lineage":["https://openalex.org/I4210142044"]}],"countries":["VN"],"is_corresponding":false,"raw_author_name":"Nhung Nguyen","raw_affiliation_strings":["College of Health Science, VinUniversity"],"affiliations":[{"raw_affiliation_string":"College of Health Science, VinUniversity","institution_ids":["https://openalex.org/I4210142044"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077334388","display_name":"Mai Tran","orcid":"https://orcid.org/0000-0002-0294-2558"},"institutions":[{"id":"https://openalex.org/I4210142044","display_name":"VinUniversity","ror":"https://ror.org/052dmdr17","country_code":"VN","type":"education","lineage":["https://openalex.org/I4210142044"]}],"countries":["VN"],"is_corresponding":false,"raw_author_name":"Mai Tran","raw_affiliation_strings":["College of Engineering &#x0026; Computer Science, VinUniversity"],"affiliations":[{"raw_affiliation_string":"College of Engineering &#x0026; Computer Science, VinUniversity","institution_ids":["https://openalex.org/I4210142044"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5101426342","display_name":"Hieu Pham","orcid":"https://orcid.org/0000-0002-9576-9167"},"institutions":[{"id":"https://openalex.org/I4210142044","display_name":"VinUniversity","ror":"https://ror.org/052dmdr17","country_code":"VN","type":"education","lineage":["https://openalex.org/I4210142044"]}],"countries":["VN"],"is_corresponding":false,"raw_author_name":"Hieu Pham","raw_affiliation_strings":["College of Engineering &#x0026; Computer Science, VinUniversity"],"affiliations":[{"raw_affiliation_string":"College of Engineering &#x0026; Computer Science, VinUniversity","institution_ids":["https://openalex.org/I4210142044"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5049099024"],"corresponding_institution_ids":["https://openalex.org/I4210142044"],"apc_list":null,"apc_paid":null,"fwci":1.7227,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.83707029,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":95,"max":96},"biblio":{"volume":null,"issue":null,"first_page":"1","last_page":"5"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.5519000291824341,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.5519000291824341,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/sarcomere","display_name":"Sarcomere","score":0.7793538570404053},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5982051491737366},{"id":"https://openalex.org/keywords/f1-score","display_name":"F1 score","score":0.41405248641967773},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3329741358757019},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.13183936476707458},{"id":"https://openalex.org/keywords/internal-medicine","display_name":"Internal medicine","score":0.11053526401519775}],"concepts":[{"id":"https://openalex.org/C68731436","wikidata":"https://www.wikidata.org/wiki/Q1337087","display_name":"Sarcomere","level":3,"score":0.7793538570404053},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5982051491737366},{"id":"https://openalex.org/C148524875","wikidata":"https://www.wikidata.org/wiki/Q6975395","display_name":"F1 score","level":2,"score":0.41405248641967773},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3329741358757019},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.13183936476707458},{"id":"https://openalex.org/C126322002","wikidata":"https://www.wikidata.org/wiki/Q11180","display_name":"Internal medicine","level":1,"score":0.11053526401519775},{"id":"https://openalex.org/C207200792","wikidata":"https://www.wikidata.org/wiki/Q428914","display_name":"Myocyte","level":2,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/isbi60581.2025.10981011","is_oa":false,"landing_page_url":"https://doi.org/10.1109/isbi60581.2025.10981011","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2025 IEEE 22nd International Symposium on Biomedical Imaging (ISBI)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":15,"referenced_works":["https://openalex.org/W1996413925","https://openalex.org/W2044465660","https://openalex.org/W2141118238","https://openalex.org/W2174470530","https://openalex.org/W2194775991","https://openalex.org/W2762201289","https://openalex.org/W2911855595","https://openalex.org/W2945624177","https://openalex.org/W2962858109","https://openalex.org/W3011609945","https://openalex.org/W3164615498","https://openalex.org/W3196897371","https://openalex.org/W4213447603","https://openalex.org/W4291155695","https://openalex.org/W4295447715"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W3015009692","https://openalex.org/W2169837375","https://openalex.org/W2082542487","https://openalex.org/W2125755819","https://openalex.org/W1585440942","https://openalex.org/W1577214112","https://openalex.org/W1985023586"],"abstract_inverted_index":{"Quantifying":[0],"sarcomere":[1,63,99,163],"structure":[2,64],"organization":[3,137,165],"in":[4,166],"human-induced":[5],"pluripotent":[6],"stem":[7],"cell-derived":[8],"cardiomyocytes":[9],"(hiPSC-CMs)":[10],"is":[11,75],"crucial":[12],"for":[13,161],"understanding":[14],"cardiac":[15,169],"disease":[16],"pathology,":[17],"improving":[18],"drug":[19],"screening,":[20],"and":[21,31,38,55,79,115],"advancing":[22,168],"regenerative":[23],"medicine.":[24],"Traditional":[25],"methods,":[26],"such":[27],"as":[28],"manual":[29],"annotation":[30],"Fourier":[32],"transform":[33],"analysis,":[34],"are":[35],"labor-intensive,":[36],"error-prone,":[37],"lack":[39],"high-throughput":[40],"capabilities.":[41],"This":[42,150],"paper":[43],"proposes":[44],"SarcNet,":[45],"a":[46,76,86,104,132,157],"novel":[47],"deep":[48],"learning-based":[49],"framework":[50,74],"that":[51,94],"leverages":[52],"cell":[53,57],"images":[54],"integrates":[56],"features":[58],"to":[59,84,92,141,153],"automatically":[60],"evaluate":[61],"the":[62,68,96,121,154],"of":[65,70,98,107,118,135,144,156],"hiPSC-CMs":[66],"from":[67,90,138],"onset":[69],"differentiation.":[71],"The":[72],"proposed":[73],"cell-features":[77],"concatenated":[78],"linear":[80,126],"layers-added":[81],"ResNet-18":[82],"module,":[83],"output":[85],"continuous":[87],"score":[88],"ranging":[89],"1":[91],"5":[93],"captures":[95],"level":[97],"structural":[100,164],"organization.":[101],"SarcNet":[102],"achieves":[103],"Spearman":[105],"correlation":[106],"0.831":[108],"with":[109,147],"expert":[110,148],"evaluations,":[111],"demonstrating":[112],"superior":[113],"performance":[114],"an":[116],"improvement":[117],"7.5%":[119],"over":[120],"previous":[122],"approach,":[123],"which":[124],"uses":[125],"regression.":[127],"Our":[128],"results":[129],"also":[130],"show":[131],"consistent":[133],"pattern":[134],"increasing":[136],"day":[139,142],"18":[140],"32":[143],"differentiation,":[145],"aligning":[146],"evaluations.":[149],"study":[151],"contributes":[152],"development":[155],"new":[158],"automated":[159],"tool":[160],"quantifying":[162],"hiPSC-CMs,":[167],"research.":[170]},"counts_by_year":[{"year":2025,"cited_by_count":2}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
