{"id":"https://openalex.org/W4410296979","doi":"https://doi.org/10.1109/isbi60581.2025.10980798","title":"COCTA: A Cortex Vessel Segmentation Benchmark Using Optical Coherence Tomography Angiography","display_name":"COCTA: A Cortex Vessel Segmentation Benchmark Using Optical Coherence Tomography Angiography","publication_year":2025,"publication_date":"2025-04-14","ids":{"openalex":"https://openalex.org/W4410296979","doi":"https://doi.org/10.1109/isbi60581.2025.10980798"},"language":"en","primary_location":{"id":"doi:10.1109/isbi60581.2025.10980798","is_oa":false,"landing_page_url":"https://doi.org/10.1109/isbi60581.2025.10980798","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2025 IEEE 22nd International Symposium on Biomedical Imaging (ISBI)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5024374739","display_name":"Jiaxiang Ren","orcid":null},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Jiaxiang Ren","raw_affiliation_strings":["Department of Computer Science"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024880872","display_name":"Wensheng Cheng","orcid":"https://orcid.org/0000-0001-7822-5216"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Wensheng Cheng","raw_affiliation_strings":["Department of Computer Science"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038797982","display_name":"Qiaochu Wang","orcid":"https://orcid.org/0000-0002-9461-6126"},"institutions":[{"id":"https://openalex.org/I59553526","display_name":"Stony Brook University","ror":"https://ror.org/05qghxh33","country_code":"US","type":"education","lineage":["https://openalex.org/I59553526"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Qiaochu Wang","raw_affiliation_strings":["Stony Brook University,Department of Biomedical Engineering"],"affiliations":[{"raw_affiliation_string":"Stony Brook University,Department of Biomedical Engineering","institution_ids":["https://openalex.org/I59553526"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028121368","display_name":"Zhenghong Li","orcid":"https://orcid.org/0000-0001-8111-6803"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Zhenghong Li","raw_affiliation_strings":["Department of Computer Science"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5117518565","display_name":"Rutwik Segireddy","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Rutwik Segireddy","raw_affiliation_strings":["Department of Computer Science"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5117518566","display_name":"Raghuveer Tatineni","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Raghuveer Tatineni","raw_affiliation_strings":["Department of Computer Science"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032186643","display_name":"Hyomin Jeong","orcid":"https://orcid.org/0000-0002-2011-9362"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Hyomin Jeong","raw_affiliation_strings":["Department of Computer Science"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5013484528","display_name":"Y. D. Liu","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Yanzuo Liu","raw_affiliation_strings":["Department of Computer Science"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036196918","display_name":"Ruoyu Xu","orcid":"https://orcid.org/0000-0001-7253-7550"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Ruoyu Xu","raw_affiliation_strings":["Department of Computer Science"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088171227","display_name":"Min Xu","orcid":"https://orcid.org/0000-0002-6661-5177"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Mira Xu","raw_affiliation_strings":["Department of Computer Science"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050750924","display_name":"Xiao Hu","orcid":"https://orcid.org/0000-0003-1128-4099"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Xiaoyu Hu","raw_affiliation_strings":["Department of Computer Science"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060107836","display_name":"Kun Jia","orcid":"https://orcid.org/0000-0002-7906-8109"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Keying Jia","raw_affiliation_strings":["Department of Computer Science"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028850077","display_name":"Congwu Du","orcid":"https://orcid.org/0000-0001-8957-4366"},"institutions":[{"id":"https://openalex.org/I59553526","display_name":"Stony Brook University","ror":"https://ror.org/05qghxh33","country_code":"US","type":"education","lineage":["https://openalex.org/I59553526"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Congwu Du","raw_affiliation_strings":["Stony Brook University,Department of Biomedical Engineering"],"affiliations":[{"raw_affiliation_string":"Stony Brook University,Department of Biomedical Engineering","institution_ids":["https://openalex.org/I59553526"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100720366","display_name":"Yingtian Pan","orcid":"https://orcid.org/0000-0002-7635-1443"},"institutions":[{"id":"https://openalex.org/I59553526","display_name":"Stony Brook University","ror":"https://ror.org/05qghxh33","country_code":"US","type":"education","lineage":["https://openalex.org/I59553526"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yingtian Pan","raw_affiliation_strings":["Stony Brook University,Department of Biomedical Engineering"],"affiliations":[{"raw_affiliation_string":"Stony Brook University,Department of Biomedical Engineering","institution_ids":["https://openalex.org/I59553526"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5061469520","display_name":"Haibin Ling","orcid":"https://orcid.org/0000-0003-4094-8413"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Haibin Ling","raw_affiliation_strings":["Department of Computer Science"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":15,"corresponding_author_ids":["https://openalex.org/A5024374739"],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.21481165,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"1","last_page":"5"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10816","display_name":"Cerebrovascular and Carotid Artery Diseases","score":0.9520999789237976,"subfield":{"id":"https://openalex.org/subfields/2740","display_name":"Pulmonary and Respiratory Medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10816","display_name":"Cerebrovascular and Carotid Artery Diseases","score":0.9520999789237976,"subfield":{"id":"https://openalex.org/subfields/2740","display_name":"Pulmonary and Respiratory Medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/optical-coherence-tomography-angiography","display_name":"Optical coherence tomography angiography","score":0.7113785743713379},{"id":"https://openalex.org/keywords/optical-coherence-tomography","display_name":"Optical coherence tomography","score":0.6747823357582092},{"id":"https://openalex.org/keywords/segmentation","display_name":"Segmentation","score":0.582762598991394},{"id":"https://openalex.org/keywords/benchmark","display_name":"Benchmark (surveying)","score":0.5652769207954407},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5129134654998779},{"id":"https://openalex.org/keywords/tomography","display_name":"Tomography","score":0.5043269395828247},{"id":"https://openalex.org/keywords/coherence","display_name":"Coherence (philosophical gambling strategy)","score":0.49238455295562744},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4544936716556549},{"id":"https://openalex.org/keywords/angiography","display_name":"Angiography","score":0.45029258728027344},{"id":"https://openalex.org/keywords/optical-tomography","display_name":"Optical tomography","score":0.4395034909248352},{"id":"https://openalex.org/keywords/computer-vision","display_name":"Computer vision","score":0.4191407859325409},{"id":"https://openalex.org/keywords/optics","display_name":"Optics","score":0.307586669921875},{"id":"https://openalex.org/keywords/geology","display_name":"Geology","score":0.25187569856643677},{"id":"https://openalex.org/keywords/radiology","display_name":"Radiology","score":0.21841010451316833},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.1768786907196045},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.16378802061080933},{"id":"https://openalex.org/keywords/geodesy","display_name":"Geodesy","score":0.053877800703048706}],"concepts":[{"id":"https://openalex.org/C2985858981","wikidata":"https://www.wikidata.org/wiki/Q60760969","display_name":"Optical coherence tomography angiography","level":3,"score":0.7113785743713379},{"id":"https://openalex.org/C2778818243","wikidata":"https://www.wikidata.org/wiki/Q899552","display_name":"Optical coherence tomography","level":2,"score":0.6747823357582092},{"id":"https://openalex.org/C89600930","wikidata":"https://www.wikidata.org/wiki/Q1423946","display_name":"Segmentation","level":2,"score":0.582762598991394},{"id":"https://openalex.org/C185798385","wikidata":"https://www.wikidata.org/wiki/Q1161707","display_name":"Benchmark (surveying)","level":2,"score":0.5652769207954407},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5129134654998779},{"id":"https://openalex.org/C163716698","wikidata":"https://www.wikidata.org/wiki/Q841267","display_name":"Tomography","level":2,"score":0.5043269395828247},{"id":"https://openalex.org/C2781181686","wikidata":"https://www.wikidata.org/wiki/Q4226068","display_name":"Coherence (philosophical gambling strategy)","level":2,"score":0.49238455295562744},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4544936716556549},{"id":"https://openalex.org/C2780643987","wikidata":"https://www.wikidata.org/wiki/Q468414","display_name":"Angiography","level":2,"score":0.45029258728027344},{"id":"https://openalex.org/C2777413408","wikidata":"https://www.wikidata.org/wiki/Q1968843","display_name":"Optical tomography","level":3,"score":0.4395034909248352},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.4191407859325409},{"id":"https://openalex.org/C120665830","wikidata":"https://www.wikidata.org/wiki/Q14620","display_name":"Optics","level":1,"score":0.307586669921875},{"id":"https://openalex.org/C127313418","wikidata":"https://www.wikidata.org/wiki/Q1069","display_name":"Geology","level":0,"score":0.25187569856643677},{"id":"https://openalex.org/C126838900","wikidata":"https://www.wikidata.org/wiki/Q77604","display_name":"Radiology","level":1,"score":0.21841010451316833},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.1768786907196045},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.16378802061080933},{"id":"https://openalex.org/C13280743","wikidata":"https://www.wikidata.org/wiki/Q131089","display_name":"Geodesy","level":1,"score":0.053877800703048706},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/isbi60581.2025.10980798","is_oa":false,"landing_page_url":"https://doi.org/10.1109/isbi60581.2025.10980798","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2025 IEEE 22nd International Symposium on Biomedical Imaging (ISBI)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2512880351","display_name":null,"funder_award_id":"IIS-2331769","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W2166934110","https://openalex.org/W2028558083","https://openalex.org/W3200823469","https://openalex.org/W2802586102","https://openalex.org/W2066831819","https://openalex.org/W2083453785","https://openalex.org/W2970707651","https://openalex.org/W2001904169","https://openalex.org/W2086732747","https://openalex.org/W2060139265"],"abstract_inverted_index":{"Cortical":[0],"vasculature":[1,67],"plays":[2],"an":[3],"important":[4],"role":[5],"in":[6,160,186],"neuroscience,":[7],"and":[8,60,81,91,133,145,167,176],"it":[9,113],"is":[10,114,156],"popularly":[11],"analyzed":[12],"using":[13,121],"optical":[14],"coherence":[15],"tomography":[16],"angiography":[17],"(OCTA).":[18],"Despite":[19],"two":[20],"decades":[21],"of":[22,29,50,62,73,183],"development,":[23],"however,":[24],"there":[25],"remains":[26],"a":[27,44,131],"lack":[28],"high":[30],"quality":[31],"vessel":[32,47,119],"segmentation":[33,48,63,96,170],"benchmark":[34,49,166],"for":[35,65,94,158,180],"cortex":[36,110],"OCTA":[37,46,69],"data.":[38],"In":[39],"this":[40],"paper,":[41],"we":[42,124,165],"introduce":[43,125],"novel":[45],"mouse":[51,122],"cortex,":[52],"called":[53],"COCTA,":[54],"which":[55],"largely":[56],"facilitates":[57],"the":[58,126,161,181],"training":[59],"evaluation":[61,159],"models":[64,99],"brain":[66],"possible.":[68],"involves":[70],"different":[71],"types":[72],"real-world":[74],"noise,":[75,78],"including":[76,172],"speckle":[77],"motion":[79],"artifacts":[80,144],"background":[82],"noise.":[83],"These":[84],"heterogeneous":[85],"noise":[86],"sources":[87],"exhibit":[88],"diverse":[89],"characteristics":[90],"post":[92],"challenges":[93],"current":[95],"methods.":[97],"Therefore,":[98],"trained":[100],"on":[101],"public":[102],"retina":[103],"datasets":[104],"can":[105],"not":[106],"easily":[107],"generalize":[108],"to":[109,116,129,142],"OCTA.":[111,187],"Additionally,":[112],"hard":[115],"accurately":[117],"delineate":[118],"boundaries":[120],"so":[123],"stylus":[127],"pen":[128],"ensure":[130],"refined":[132],"natural-look":[134],"mask.":[135],"Besides,":[136],"our":[137,154],"annotators":[138],"make":[139],"extensive":[140],"efforts":[141],"remove":[143],"reveal":[146],"underling":[147],"vessels.":[148],"With":[149],"these":[150],"corrected":[151],"manual":[152,191],"masks,":[153],"dataset":[155,189],"suitable":[157],"denoising":[162],"community.":[163],"Lastly,":[164],"analyze":[168],"various":[169],"methods,":[171],"convolutional":[173],"neural":[174],"networks":[175],"transformers,":[177],"providing":[178],"insights":[179],"development":[182],"new":[184],"approaches":[185],"The":[188],"with":[190],"annotations":[192],"are":[193],"available":[194],"at":[195],"https://github.com/reckdk/COCTA-dataset.":[196]},"counts_by_year":[],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}