{"id":"https://openalex.org/W4410297506","doi":"https://doi.org/10.1109/isbi60581.2025.10980737","title":"Optimizing Cell Recognition in Sarcoma Multiplex Immunohistochemistry Images via Pre-Training Strategies","display_name":"Optimizing Cell Recognition in Sarcoma Multiplex Immunohistochemistry Images via Pre-Training Strategies","publication_year":2025,"publication_date":"2025-04-14","ids":{"openalex":"https://openalex.org/W4410297506","doi":"https://doi.org/10.1109/isbi60581.2025.10980737"},"language":"en","primary_location":{"id":"doi:10.1109/isbi60581.2025.10980737","is_oa":false,"landing_page_url":"https://doi.org/10.1109/isbi60581.2025.10980737","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2025 IEEE 22nd International Symposium on Biomedical Imaging (ISBI)","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5045480484","display_name":"Pingjun Chen","orcid":"https://orcid.org/0000-0003-0528-1713"},"institutions":[{"id":"https://openalex.org/I1343551460","display_name":"The University of Texas MD Anderson Cancer Center","ror":"https://ror.org/04twxam07","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1343551460"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Pingjun Chen","raw_affiliation_strings":["The University of Texas MD Anderson Cancer Center,Department of Translational Molecular Pathology"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The University of Texas MD Anderson Cancer Center,Department of Translational Molecular Pathology","institution_ids":["https://openalex.org/I1343551460"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100256417","display_name":"Maria E. Salvatierra","orcid":null},"institutions":[{"id":"https://openalex.org/I1343551460","display_name":"The University of Texas MD Anderson Cancer Center","ror":"https://ror.org/04twxam07","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1343551460"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Maria E. Salvatierra","raw_affiliation_strings":["The University of Texas MD Anderson Cancer Center,Department of Translational Molecular Pathology"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The University of Texas MD Anderson Cancer Center,Department of Translational Molecular Pathology","institution_ids":["https://openalex.org/I1343551460"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5043117364","display_name":"Alejandra G. Serrano","orcid":"https://orcid.org/0000-0001-6759-9239"},"institutions":[{"id":"https://openalex.org/I1343551460","display_name":"The University of Texas MD Anderson Cancer Center","ror":"https://ror.org/04twxam07","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1343551460"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Alejandra Serrano","raw_affiliation_strings":["The University of Texas MD Anderson Cancer Center,Department of Translational Molecular Pathology"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The University of Texas MD Anderson Cancer Center,Department of Translational Molecular Pathology","institution_ids":["https://openalex.org/I1343551460"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029074946","display_name":"Karla Iliana Gonz\u00e1lez","orcid":null},"institutions":[{"id":"https://openalex.org/I1343551460","display_name":"The University of Texas MD Anderson Cancer Center","ror":"https://ror.org/04twxam07","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1343551460"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Karina Pinao Gonzalez","raw_affiliation_strings":["The University of Texas MD Anderson Cancer Center,Department of Translational Molecular Pathology"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The University of Texas MD Anderson Cancer Center,Department of Translational Molecular Pathology","institution_ids":["https://openalex.org/I1343551460"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078763626","display_name":"Sara Ranjbar","orcid":"https://orcid.org/0000-0002-4344-1282"},"institutions":[{"id":"https://openalex.org/I1343551460","display_name":"The University of Texas MD Anderson Cancer Center","ror":"https://ror.org/04twxam07","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1343551460"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sara Ranjbar","raw_affiliation_strings":["The University of Texas MD Anderson Cancer Center,Department of Translational Molecular Pathology"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The University of Texas MD Anderson Cancer Center,Department of Translational Molecular Pathology","institution_ids":["https://openalex.org/I1343551460"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008136014","display_name":"Yasin Shokrollahi","orcid":"https://orcid.org/0000-0002-2456-7103"},"institutions":[{"id":"https://openalex.org/I1343551460","display_name":"The University of Texas MD Anderson Cancer Center","ror":"https://ror.org/04twxam07","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1343551460"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yasin Shokrollahi","raw_affiliation_strings":["The University of Texas MD Anderson Cancer Center,Department of Translational Molecular Pathology"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The University of Texas MD Anderson Cancer Center,Department of Translational Molecular Pathology","institution_ids":["https://openalex.org/I1343551460"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5113431621","display_name":"Tanishq Gautam","orcid":null},"institutions":[{"id":"https://openalex.org/I1343551460","display_name":"The University of Texas MD Anderson Cancer Center","ror":"https://ror.org/04twxam07","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1343551460"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Tanishq Gautam","raw_affiliation_strings":["The University of Texas MD Anderson Cancer Center,Department of Translational Molecular Pathology"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The University of Texas MD Anderson Cancer Center,Department of Translational Molecular Pathology","institution_ids":["https://openalex.org/I1343551460"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5113596629","display_name":"Bernal Rodr\u00edguez","orcid":null},"institutions":[{"id":"https://openalex.org/I1343551460","display_name":"The University of Texas MD Anderson Cancer Center","ror":"https://ror.org/04twxam07","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1343551460"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"B. Leticia Rodriguez","raw_affiliation_strings":["The University of Texas MD Anderson Cancer Center,Department of Translational Molecular Pathology"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The University of Texas MD Anderson Cancer Center,Department of Translational Molecular Pathology","institution_ids":["https://openalex.org/I1343551460"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5117231980","display_name":"Patient Mosaic Team","orcid":null},"institutions":[{"id":"https://openalex.org/I1343551460","display_name":"The University of Texas MD Anderson Cancer Center","ror":"https://ror.org/04twxam07","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1343551460"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Patient Mosaic Team","raw_affiliation_strings":["MD The University of Texas MD Anderson Cancer Center"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"MD The University of Texas MD Anderson Cancer Center","institution_ids":["https://openalex.org/I1343551460"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5006285886","display_name":"Xiaoxi Pan","orcid":"https://orcid.org/0000-0002-6146-5771"},"institutions":[{"id":"https://openalex.org/I1343551460","display_name":"The University of Texas MD Anderson Cancer Center","ror":"https://ror.org/04twxam07","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1343551460"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Xiaoxi Pan","raw_affiliation_strings":["The University of Texas MD Anderson Cancer Center,Department of Translational Molecular Pathology"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The University of Texas MD Anderson Cancer Center,Department of Translational Molecular Pathology","institution_ids":["https://openalex.org/I1343551460"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079077130","display_name":"Luisa M. Solis Soto","orcid":"https://orcid.org/0000-0002-1253-630X"},"institutions":[{"id":"https://openalex.org/I1343551460","display_name":"The University of Texas MD Anderson Cancer Center","ror":"https://ror.org/04twxam07","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1343551460"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Luisa M. Solis Soto","raw_affiliation_strings":["The University of Texas MD Anderson Cancer Center,Department of Translational Molecular Pathology"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The University of Texas MD Anderson Cancer Center,Department of Translational Molecular Pathology","institution_ids":["https://openalex.org/I1343551460"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5011555338","display_name":"Yinyin Yuan","orcid":"https://orcid.org/0000-0002-8556-4707"},"institutions":[{"id":"https://openalex.org/I1343551460","display_name":"The University of Texas MD Anderson Cancer Center","ror":"https://ror.org/04twxam07","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1343551460"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yinyin Yuan","raw_affiliation_strings":["The University of Texas MD Anderson Cancer Center,Department of Translational Molecular Pathology"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The University of Texas MD Anderson Cancer Center,Department of Translational Molecular Pathology","institution_ids":["https://openalex.org/I1343551460"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I1343551460"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.1141862,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"1","last_page":"5"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12422","display_name":"Radiomics and Machine Learning in Medical Imaging","score":0.9264000058174133,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T12422","display_name":"Radiomics and Machine Learning in Medical Imaging","score":0.9264000058174133,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/immunohistochemistry","display_name":"Immunohistochemistry","score":0.6228993535041809},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6150851249694824},{"id":"https://openalex.org/keywords/multiplex","display_name":"Multiplex","score":0.5982103943824768},{"id":"https://openalex.org/keywords/sarcoma","display_name":"Sarcoma","score":0.45967960357666016},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.42022615671157837},{"id":"https://openalex.org/keywords/pathology","display_name":"Pathology","score":0.2938578724861145},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.2524711489677429},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1639920175075531},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.08544829487800598}],"concepts":[{"id":"https://openalex.org/C204232928","wikidata":"https://www.wikidata.org/wiki/Q899285","display_name":"Immunohistochemistry","level":2,"score":0.6228993535041809},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6150851249694824},{"id":"https://openalex.org/C2781188995","wikidata":"https://www.wikidata.org/wiki/Q6934982","display_name":"Multiplex","level":2,"score":0.5982103943824768},{"id":"https://openalex.org/C2778256501","wikidata":"https://www.wikidata.org/wiki/Q223911","display_name":"Sarcoma","level":2,"score":0.45967960357666016},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.42022615671157837},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.2938578724861145},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.2524711489677429},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1639920175075531},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.08544829487800598}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/isbi60581.2025.10980737","is_oa":false,"landing_page_url":"https://doi.org/10.1109/isbi60581.2025.10980737","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2025 IEEE 22nd International Symposium on Biomedical Imaging (ISBI)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320306210","display_name":"Albert and Margaret Alkek Foundation","ror":"https://ror.org/0470nty22"},{"id":"https://openalex.org/F4320309780","display_name":"Lyda Hill Foundation","ror":"https://ror.org/032sf2845"},{"id":"https://openalex.org/F4320332521","display_name":"University of Texas MD Anderson Cancer Center","ror":"https://ror.org/04twxam07"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":14,"referenced_works":["https://openalex.org/W2974825848","https://openalex.org/W2979826702","https://openalex.org/W2999219213","https://openalex.org/W3000282923","https://openalex.org/W3095032600","https://openalex.org/W3120894151","https://openalex.org/W3159481202","https://openalex.org/W3175051117","https://openalex.org/W3214596602","https://openalex.org/W4221156434","https://openalex.org/W4392883923","https://openalex.org/W4409488923","https://openalex.org/W6775769912","https://openalex.org/W6869661598"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W2999877485","https://openalex.org/W2355920994","https://openalex.org/W2390279801","https://openalex.org/W4391913857","https://openalex.org/W2358668433","https://openalex.org/W2399421402","https://openalex.org/W4396701345"],"abstract_inverted_index":{"Comprehensive":[0],"profiling":[1],"of":[2,37,118,123,137],"the":[3,30,34,55,64,79,92,100,134],"sarcoma":[4,106],"immune":[5,23],"microenvironment":[6],"offers":[7],"insights":[8],"into":[9],"varying":[10],"immunotherapy":[11],"responses.":[12],"Multiplex":[13],"immunohistochemistry":[14],"(mIH$C$)":[15],"enables":[16],"staining":[17],"multiple":[18],"markers,":[19],"allowing":[20],"for":[21,43,147],"studying":[22],"cell":[24,45,101],"composition":[25],"and":[26,59,97,120],"spatial":[27],"interactions":[28],"within":[29],"same":[31],"tissue.":[32],"However,":[33],"morphological":[35],"complexity":[36],"mIHC":[38],"images":[39],"poses":[40],"fundamental":[41],"challenges":[42],"precise":[44],"recognition.":[46],"Moreover,":[47],"obtaining":[48],"large-scale":[49,83],"annotations":[50],"is":[51],"difficult":[52],"due":[53],"to":[54],"required":[56],"intensive":[57],"labor":[58],"domain":[60],"expertise.":[61],"We":[62],"address":[63],"challenge":[65],"by":[66,87,129],"proposing":[67],"a":[68,113,130],"three-step":[69],"training":[70,110,126,142],"mechanism":[71,143],"utilizing":[72],"pretraining":[73,88,138],"strategies.":[74,139],"Specifically,":[75],"we":[76],"first":[77],"pretrain":[78],"ViT":[80],"encoder":[81],"on":[82,91,104],"natural":[84],"images,":[85],"followed":[86],"segmentation":[89],"decoders":[90],"medium-scale":[93],"Pan-Nuke":[94],"H&E":[95],"dataset,":[96],"finally,":[98],"fine-tune":[99],"recognition":[102],"model":[103],"small-scale":[105],"mIH$C$images.":[107],"The":[108,140],"proposed":[109,141],"method":[111],"achieves":[112],"mean":[114],"panoptic":[115],"quality":[116],"(mPQ)":[117],"0.435":[119],"an$F_{1}$-detection":[121],"score":[122],"0.702,":[124],"outperforms":[125],"from":[127],"scratch":[128],"substantial":[131],"margin,":[132],"underscoring":[133],"critical":[135],"value":[136],"holds":[144],"great":[145],"potential":[146],"other":[148],"cancer-specific,":[149],"staining-unique":[150],"data":[151],"with":[152],"limited":[153],"annotations.":[154]},"counts_by_year":[],"updated_date":"2026-07-29T14:22:42.915294","created_date":"2025-10-10T00:00:00"}
