{"id":"https://openalex.org/W4410295347","doi":"https://doi.org/10.1109/isbi60581.2025.10980653","title":"Segmentation of Microvascular Networks Embedded in Gigavoxel 3D Images Using RSF Level Sets with OpenVDB","display_name":"Segmentation of Microvascular Networks Embedded in Gigavoxel 3D Images Using RSF Level Sets with OpenVDB","publication_year":2025,"publication_date":"2025-04-14","ids":{"openalex":"https://openalex.org/W4410295347","doi":"https://doi.org/10.1109/isbi60581.2025.10980653"},"language":"en","primary_location":{"id":"doi:10.1109/isbi60581.2025.10980653","is_oa":false,"landing_page_url":"https://doi.org/10.1109/isbi60581.2025.10980653","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2025 IEEE 22nd International Symposium on Biomedical Imaging (ISBI)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5095084217","display_name":"Meher Niger","orcid":null},"institutions":[{"id":"https://openalex.org/I44461941","display_name":"University of Houston","ror":"https://ror.org/048sx0r50","country_code":"US","type":"education","lineage":["https://openalex.org/I44461941"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Meher Niger","raw_affiliation_strings":["University of Houston,Houston,TX,USA"],"affiliations":[{"raw_affiliation_string":"University of Houston,Houston,TX,USA","institution_ids":["https://openalex.org/I44461941"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079226653","display_name":"Wilna J. Moree","orcid":null},"institutions":[{"id":"https://openalex.org/I4210160941","display_name":"Swift Engineering (United States)","ror":"https://ror.org/04r99rr28","country_code":"US","type":"company","lineage":["https://openalex.org/I4210160941"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Wilna Moree","raw_affiliation_strings":["SwiftFront, LLC,Houston,TX,USA"],"affiliations":[{"raw_affiliation_string":"SwiftFront, LLC,Houston,TX,USA","institution_ids":["https://openalex.org/I4210160941"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5117517707","display_name":"Maximillian Bluhm","orcid":null},"institutions":[{"id":"https://openalex.org/I44461941","display_name":"University of Houston","ror":"https://ror.org/048sx0r50","country_code":"US","type":"education","lineage":["https://openalex.org/I44461941"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Maximillian Bluhm","raw_affiliation_strings":["University of Houston,Houston,TX,USA"],"affiliations":[{"raw_affiliation_string":"University of Houston,Houston,TX,USA","institution_ids":["https://openalex.org/I44461941"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080933567","display_name":"Jason L. Eriksen","orcid":"https://orcid.org/0000-0003-1549-4165"},"institutions":[{"id":"https://openalex.org/I44461941","display_name":"University of Houston","ror":"https://ror.org/048sx0r50","country_code":"US","type":"education","lineage":["https://openalex.org/I44461941"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jason Eriksen","raw_affiliation_strings":["University of Houston,Houston,TX,USA"],"affiliations":[{"raw_affiliation_string":"University of Houston,Houston,TX,USA","institution_ids":["https://openalex.org/I44461941"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055426585","display_name":"Guoning Chen","orcid":"https://orcid.org/0000-0003-0581-6415"},"institutions":[{"id":"https://openalex.org/I44461941","display_name":"University of Houston","ror":"https://ror.org/048sx0r50","country_code":"US","type":"education","lineage":["https://openalex.org/I44461941"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Guoning Chen","raw_affiliation_strings":["University of Houston,Houston,TX,USA"],"affiliations":[{"raw_affiliation_string":"University of Houston,Houston,TX,USA","institution_ids":["https://openalex.org/I44461941"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5035201965","display_name":"David Mayerich","orcid":"https://orcid.org/0000-0002-3949-6133"},"institutions":[{"id":"https://openalex.org/I44461941","display_name":"University of Houston","ror":"https://ror.org/048sx0r50","country_code":"US","type":"education","lineage":["https://openalex.org/I44461941"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"David Mayerich","raw_affiliation_strings":["University of Houston,Houston,TX,USA"],"affiliations":[{"raw_affiliation_string":"University of Houston,Houston,TX,USA","institution_ids":["https://openalex.org/I44461941"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5095084217"],"corresponding_institution_ids":["https://openalex.org/I44461941"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.10550498,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"1","last_page":"4"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10052","display_name":"Medical Image Segmentation Techniques","score":0.8233000040054321,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10052","display_name":"Medical Image Segmentation Techniques","score":0.8233000040054321,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.547161877155304},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.48400184512138367},{"id":"https://openalex.org/keywords/segmentation","display_name":"Segmentation","score":0.4609357416629791},{"id":"https://openalex.org/keywords/image-segmentation","display_name":"Image segmentation","score":0.4504960775375366},{"id":"https://openalex.org/keywords/computer-vision","display_name":"Computer vision","score":0.4427223801612854},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.33268800377845764}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.547161877155304},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.48400184512138367},{"id":"https://openalex.org/C89600930","wikidata":"https://www.wikidata.org/wiki/Q1423946","display_name":"Segmentation","level":2,"score":0.4609357416629791},{"id":"https://openalex.org/C124504099","wikidata":"https://www.wikidata.org/wiki/Q56933","display_name":"Image segmentation","level":3,"score":0.4504960775375366},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.4427223801612854},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.33268800377845764}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/isbi60581.2025.10980653","is_oa":false,"landing_page_url":"https://doi.org/10.1109/isbi60581.2025.10980653","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2025 IEEE 22nd International Symposium on Biomedical Imaging (ISBI)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/2","score":0.4099999964237213,"display_name":"Zero hunger"}],"awards":[{"id":"https://openalex.org/G3497874884","display_name":null,"funder_award_id":"1R41GM140586-01","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G6882440340","display_name":null,"funder_award_id":"R01HL146745","funder_id":"https://openalex.org/F4320337338","funder_display_name":"National Heart, Lung, and Blood Institute"},{"id":"https://openalex.org/G7235659990","display_name":null,"funder_award_id":"1943455","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337338","display_name":"National Heart, Lung, and Blood Institute","ror":"https://ror.org/012pb6c26"},{"id":"https://openalex.org/F4320337354","display_name":"National Institute of General Medical Sciences","ror":"https://ror.org/04q48ey07"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":11,"referenced_works":["https://openalex.org/W1979393293","https://openalex.org/W2021411806","https://openalex.org/W2045299099","https://openalex.org/W2091657244","https://openalex.org/W2116040950","https://openalex.org/W2139478903","https://openalex.org/W2979807963","https://openalex.org/W3092946941","https://openalex.org/W3194387525","https://openalex.org/W4293564567","https://openalex.org/W4300416968"],"related_works":["https://openalex.org/W2772917594","https://openalex.org/W2036807459","https://openalex.org/W2058170566","https://openalex.org/W2755342338","https://openalex.org/W2166024367","https://openalex.org/W3116076068","https://openalex.org/W2229312674","https://openalex.org/W2951359407","https://openalex.org/W2079911747","https://openalex.org/W1969923398"],"abstract_inverted_index":{"Microvascular":[0],"networks":[1,29,47],"are":[2,41,49,100],"vital":[3],"for":[4,52,59],"tissue":[5],"function":[6],"and":[7,63],"disease":[8],"progression,":[9],"but":[10,55],"their":[11],"complex":[12],"three-dimensional":[13],"structure":[14,129],"makes":[15],"them":[16],"difficult":[17],"to":[18,43,76,89,135],"analyze.":[19],"Recent":[20],"milling-based":[21],"microscopy":[22],"methods":[23],"can":[24],"capture":[25],"images":[26,40],"of":[27,81,94,138],"these":[28],"in":[30,122],"whole":[31],"organs":[32],"at":[33],"high":[34],"resolution,":[35],"though":[36],"the":[37,60,95,132,139],"resulting":[38],"gigavoxel-scale":[39,79],"challenging":[42],"segment.":[44],"Convo-lutional":[45],"neural":[46],"(CNNs)":[48],"commonly":[50],"used":[51],"this":[53,112],"task,":[54],"they":[56],"cannot":[57],"account":[58],"network's":[61],"shape":[62],"topology.":[64],"This":[65],"paper":[66],"presents":[67],"a":[68,71,78,104,125],"solution":[69],"using":[70,103,124],"fully":[72],"automated":[73],"milling":[74],"microscope":[75],"create":[77,90],"dataset":[80],"mouse":[82],"liver":[83],"microvasculature.":[84],"A":[85],"CNN":[86],"is":[87,120],"trained":[88],"an":[91],"initial":[92],"segmentation":[93],"vascular":[96],"network.":[97],"The":[98],"vessels":[99],"then":[101],"refined":[102],"parallel":[105,123],"RSF-based":[106],"level":[107],"set":[108],"model.":[109],"To":[110],"make":[111],"model":[113],"practical":[114],"on":[115],"such":[116],"large":[117],"volumes,":[118],"it":[119],"implemented":[121],"sparse":[126],"OpenVDB":[127],"data":[128],"that":[130],"reduces":[131],"grid":[133],"size":[134],"approxately":[136],"4%":[137],"original.":[140]},"counts_by_year":[],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
