{"id":"https://openalex.org/W4401751378","doi":"https://doi.org/10.1109/isbi56570.2024.10635543","title":"Differentiable VQ-VAE\u2019s for Robust White Matter Streamline Encodings","display_name":"Differentiable VQ-VAE\u2019s for Robust White Matter Streamline Encodings","publication_year":2024,"publication_date":"2024-05-27","ids":{"openalex":"https://openalex.org/W4401751378","doi":"https://doi.org/10.1109/isbi56570.2024.10635543","pmid":"https://pubmed.ncbi.nlm.nih.gov/40191735"},"language":"en","primary_location":{"id":"doi:10.1109/isbi56570.2024.10635543","is_oa":false,"landing_page_url":"https://doi.org/10.1109/isbi56570.2024.10635543","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2024 IEEE International Symposium on Biomedical Imaging (ISBI)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11968768/pdf/nihms-2060037.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5024674786","display_name":"Andrew Lizarraga","orcid":null},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Andrew Lizarraga","raw_affiliation_strings":["UCLA,Department of Statistics and Data Science,USA"],"affiliations":[{"raw_affiliation_string":"UCLA,Department of Statistics and Data Science,USA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055199360","display_name":"Brandon Taraku","orcid":"https://orcid.org/0000-0001-7998-1128"},"institutions":[{"id":"https://openalex.org/I2802280879","display_name":"Brain Mapping Foundation","ror":"https://ror.org/04n1h1g04","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I2802280879"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Brandon Taraku","raw_affiliation_strings":["UCLA,Ahmanson-Lovelace Brain Mapping Center,Department of Neurology,USA"],"affiliations":[{"raw_affiliation_string":"UCLA,Ahmanson-Lovelace Brain Mapping Center,Department of Neurology,USA","institution_ids":["https://openalex.org/I2802280879"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012169627","display_name":"E Honig","orcid":"https://orcid.org/0009-0001-4591-3546"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Edouardo Honig","raw_affiliation_strings":["UCLA,Department of Statistics and Data Science,USA"],"affiliations":[{"raw_affiliation_string":"UCLA,Department of Statistics and Data Science,USA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055935194","display_name":"Ying Wu","orcid":"https://orcid.org/0000-0002-5635-8090"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Ying Nian Wu","raw_affiliation_strings":["UCLA,Department of Statistics and Data Science,USA"],"affiliations":[{"raw_affiliation_string":"UCLA,Department of Statistics and Data Science,USA","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5102761190","display_name":"Shantanu H. Joshi","orcid":"https://orcid.org/0000-0003-1287-7005"},"institutions":[{"id":"https://openalex.org/I2802280879","display_name":"Brain Mapping Foundation","ror":"https://ror.org/04n1h1g04","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I2802280879"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Shantanu H. Joshi","raw_affiliation_strings":["UCLA,Ahmanson-Lovelace Brain Mapping Center,Department of Neurology,USA"],"affiliations":[{"raw_affiliation_string":"UCLA,Ahmanson-Lovelace Brain Mapping Center,Department of Neurology,USA","institution_ids":["https://openalex.org/I2802280879"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5024674786"],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.4893,"has_fulltext":true,"cited_by_count":2,"citation_normalized_percentile":{"value":0.63808489,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":95},"biblio":{"volume":"2024","issue":null,"first_page":"1","last_page":"5"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10901","display_name":"Advanced Data Compression Techniques","score":0.9970999956130981,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10901","display_name":"Advanced Data Compression Techniques","score":0.9970999956130981,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10860","display_name":"Speech and Audio Processing","score":0.9948999881744385,"subfield":{"id":"https://openalex.org/subfields/1711","display_name":"Signal Processing"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11447","display_name":"Blind Source Separation Techniques","score":0.9915000200271606,"subfield":{"id":"https://openalex.org/subfields/1711","display_name":"Signal Processing"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/differentiable-function","display_name":"Differentiable function","score":0.5948365330696106},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.518311619758606},{"id":"https://openalex.org/keywords/white-matter","display_name":"White matter","score":0.46232321858406067},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.32445400953292847},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.2805478572845459},{"id":"https://openalex.org/keywords/pure-mathematics","display_name":"Pure mathematics","score":0.14273342490196228},{"id":"https://openalex.org/keywords/magnetic-resonance-imaging","display_name":"Magnetic resonance imaging","score":0.075354665517807}],"concepts":[{"id":"https://openalex.org/C202615002","wikidata":"https://www.wikidata.org/wiki/Q783507","display_name":"Differentiable function","level":2,"score":0.5948365330696106},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.518311619758606},{"id":"https://openalex.org/C2781192897","wikidata":"https://www.wikidata.org/wiki/Q822050","display_name":"White matter","level":3,"score":0.46232321858406067},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.32445400953292847},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.2805478572845459},{"id":"https://openalex.org/C202444582","wikidata":"https://www.wikidata.org/wiki/Q837863","display_name":"Pure mathematics","level":1,"score":0.14273342490196228},{"id":"https://openalex.org/C143409427","wikidata":"https://www.wikidata.org/wiki/Q161238","display_name":"Magnetic resonance imaging","level":2,"score":0.075354665517807},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.0},{"id":"https://openalex.org/C126838900","wikidata":"https://www.wikidata.org/wiki/Q77604","display_name":"Radiology","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1109/isbi56570.2024.10635543","is_oa":false,"landing_page_url":"https://doi.org/10.1109/isbi56570.2024.10635543","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2024 IEEE International Symposium on Biomedical Imaging (ISBI)","raw_type":"proceedings-article"},{"id":"pmid:40191735","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40191735","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings. IEEE International Symposium on Biomedical Imaging","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:11968768","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11968768","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11968768/pdf/nihms-2060037.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Proc IEEE Int Symp Biomed Imaging","raw_type":"Text"}],"best_oa_location":{"id":"pmh:oai:pubmedcentral.nih.gov:11968768","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11968768","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11968768/pdf/nihms-2060037.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Proc IEEE Int Symp Biomed Imaging","raw_type":"Text"},"sustainable_development_goals":[{"score":0.7900000214576721,"id":"https://metadata.un.org/sdg/13","display_name":"Climate action"}],"awards":[{"id":"https://openalex.org/G1038160048","display_name":"Generative Modeling with Short Run Computing","funder_award_id":"2015577","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G4021655846","display_name":null,"funder_award_id":"AA025653","funder_id":"https://openalex.org/F4320337330","funder_display_name":"National Institute on Alcohol Abuse and Alcoholism"},{"id":"https://openalex.org/G4215934209","display_name":null,"funder_award_id":"DMS-2015577","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G6755165505","display_name":null,"funder_award_id":"award","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G7422516467","display_name":null,"funder_award_id":"NIAAA","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G8127758054","display_name":null,"funder_award_id":"AA02565","funder_id":"https://openalex.org/F4320337330","funder_display_name":"National Institute on Alcohol Abuse and Alcoholism"},{"id":"https://openalex.org/G848032724","display_name":null,"funder_award_id":"Science","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337330","display_name":"National Institute on Alcohol Abuse and Alcoholism","ror":"https://ror.org/02jzrsm59"}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4401751378.pdf"},"referenced_works_count":14,"referenced_works":["https://openalex.org/W2187089797","https://openalex.org/W2612690371","https://openalex.org/W2752796333","https://openalex.org/W3092593892","https://openalex.org/W3172893236","https://openalex.org/W3180355996","https://openalex.org/W4283311895","https://openalex.org/W4294975481","https://openalex.org/W4310060332","https://openalex.org/W4318773574","https://openalex.org/W4389542205","https://openalex.org/W6640963894","https://openalex.org/W6729448088","https://openalex.org/W6844116482"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W4285277090","https://openalex.org/W4327738859","https://openalex.org/W2348722996","https://openalex.org/W2334570605","https://openalex.org/W3181683615","https://openalex.org/W4286826125","https://openalex.org/W1633485514"],"abstract_inverted_index":{"Given":[0],"the":[1,18,31,57,63,70,76,130,138],"complex":[2],"geometry":[3],"of":[4,33,49,56,67,72,110,137],"white":[5],"matter":[6],"streamlines,":[7],"Autoencoders":[8,140],"have":[9],"been":[10],"proposed":[11],"as":[12,43,112],"a":[13,22,46,53,96],"dimension-reduction":[14],"tool":[15],"to":[16,45,86,106,126],"simplify":[17],"analysis":[19],"streamlines":[20,42,68,111,128],"in":[21,129,144],"low-dimensional":[23],"latent":[24,77,131],"spaces.":[25],"However,":[26],"despite":[27],"these":[28],"recent":[29],"successes,":[30],"majority":[32],"encoder":[34,58],"architectures":[35],"only":[36],"perform":[37],"dimension":[38],"reduction":[39],"on":[40],"single":[41,113],"opposed":[44],"full":[47],"bundle":[48],"streamlines.":[50],"This":[51],"is":[52],"severe":[54],"limitation":[55],"architecture":[59],"that":[60,120],"completely":[61],"disregards":[62],"global":[64],"geometric":[65],"structure":[66],"at":[69],"expense":[71],"individual":[73],"fibers.":[74],"Moreover,":[75],"space":[78],"may":[79],"not":[80],"be":[81,123],"well":[82],"structured":[83],"which":[84,103],"leads":[85],"doubt":[87],"into":[88],"their":[89],"interpretability.":[90],"In":[91],"this":[92],"paper":[93],"we":[94],"propose":[95],"novel":[97],"Differentiable":[98],"Vector":[99],"Quantized":[100],"Variational":[101],"Autoencoder,":[102],"are":[104],"engineered":[105],"ingest":[107],"entire":[108],"bundles":[109],"data-point":[114],"and":[115,147],"provides":[116],"reliable":[117],"trustworthy":[118],"encodings":[119],"can":[121],"then":[122],"later":[124],"used":[125],"analyze":[127],"space.":[132],"Comparisons":[133],"with":[134],"several":[135],"state":[136],"art":[139],"demonstrate":[141],"superior":[142],"performance":[143],"both":[145],"encoding":[146],"synthesis.":[148]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}