{"id":"https://openalex.org/W4401750497","doi":"https://doi.org/10.1109/isbi56570.2024.10635302","title":"An Automated Pipeline for Tumour-Infiltrating Lymphocyte Scoring in Breast Cancer","display_name":"An Automated Pipeline for Tumour-Infiltrating Lymphocyte Scoring in Breast Cancer","publication_year":2024,"publication_date":"2024-05-27","ids":{"openalex":"https://openalex.org/W4401750497","doi":"https://doi.org/10.1109/isbi56570.2024.10635302"},"language":"en","primary_location":{"id":"doi:10.1109/isbi56570.2024.10635302","is_oa":false,"landing_page_url":"https://doi.org/10.1109/isbi56570.2024.10635302","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2024 IEEE International Symposium on Biomedical Imaging (ISBI)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5065857176","display_name":"Adam Shephard","orcid":"https://orcid.org/0000-0003-0969-2990"},"institutions":[{"id":"https://openalex.org/I39555362","display_name":"University of Warwick","ror":"https://ror.org/01a77tt86","country_code":"GB","type":"education","lineage":["https://openalex.org/I39555362"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Adam J Shephard","raw_affiliation_strings":["University of Warwick,Tissue Image Analytics Centre,Department of Computer Science,UK"],"affiliations":[{"raw_affiliation_string":"University of Warwick,Tissue Image Analytics Centre,Department of Computer Science,UK","institution_ids":["https://openalex.org/I39555362"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059185353","display_name":"Mostafa Jahanifar","orcid":"https://orcid.org/0000-0001-5842-0460"},"institutions":[{"id":"https://openalex.org/I39555362","display_name":"University of Warwick","ror":"https://ror.org/01a77tt86","country_code":"GB","type":"education","lineage":["https://openalex.org/I39555362"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Mostafa Jahanifar","raw_affiliation_strings":["University of Warwick,Tissue Image Analytics Centre,Department of Computer Science,UK"],"affiliations":[{"raw_affiliation_string":"University of Warwick,Tissue Image Analytics Centre,Department of Computer Science,UK","institution_ids":["https://openalex.org/I39555362"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100653715","display_name":"Ruoyu Wang","orcid":"https://orcid.org/0000-0003-4623-6724"},"institutions":[{"id":"https://openalex.org/I39555362","display_name":"University of Warwick","ror":"https://ror.org/01a77tt86","country_code":"GB","type":"education","lineage":["https://openalex.org/I39555362"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Ruoyu Wang","raw_affiliation_strings":["University of Warwick,Tissue Image Analytics Centre,Department of Computer Science,UK"],"affiliations":[{"raw_affiliation_string":"University of Warwick,Tissue Image Analytics Centre,Department of Computer Science,UK","institution_ids":["https://openalex.org/I39555362"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102828760","display_name":"Muhammad Dawood","orcid":"https://orcid.org/0000-0001-5096-9416"},"institutions":[{"id":"https://openalex.org/I39555362","display_name":"University of Warwick","ror":"https://ror.org/01a77tt86","country_code":"GB","type":"education","lineage":["https://openalex.org/I39555362"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Muhammad Dawood","raw_affiliation_strings":["University of Warwick,Tissue Image Analytics Centre,Department of Computer Science,UK"],"affiliations":[{"raw_affiliation_string":"University of Warwick,Tissue Image Analytics Centre,Department of Computer Science,UK","institution_ids":["https://openalex.org/I39555362"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034385371","display_name":"Simon Graham","orcid":"https://orcid.org/0000-0002-2214-8212"},"institutions":[{"id":"https://openalex.org/I39555362","display_name":"University of Warwick","ror":"https://ror.org/01a77tt86","country_code":"GB","type":"education","lineage":["https://openalex.org/I39555362"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Simon Graham","raw_affiliation_strings":["University of Warwick,Tissue Image Analytics Centre,Department of Computer Science,UK"],"affiliations":[{"raw_affiliation_string":"University of Warwick,Tissue Image Analytics Centre,Department of Computer Science,UK","institution_ids":["https://openalex.org/I39555362"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110966928","display_name":"Kastytis \u0160idlauskas","orcid":null},"institutions":[{"id":"https://openalex.org/I166337079","display_name":"Queen Mary University of London","ror":"https://ror.org/026zzn846","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I166337079"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Kastytis Sidlauskas","raw_affiliation_strings":["Queen Mary University of London,Barts Cancer Institute,UK"],"affiliations":[{"raw_affiliation_string":"Queen Mary University of London,Barts Cancer Institute,UK","institution_ids":["https://openalex.org/I166337079"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007545621","display_name":"Syed Ali Khurram","orcid":"https://orcid.org/0000-0002-0378-9380"},"institutions":[{"id":"https://openalex.org/I91136226","display_name":"University of Sheffield","ror":"https://ror.org/05krs5044","country_code":"GB","type":"education","lineage":["https://openalex.org/I91136226"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Syed Ali Khurram","raw_affiliation_strings":["University of Sheffield,School of Clinical Dentistry,UK"],"affiliations":[{"raw_affiliation_string":"University of Sheffield,School of Clinical Dentistry,UK","institution_ids":["https://openalex.org/I91136226"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5069179055","display_name":"Nasir Rajpoot","orcid":"https://orcid.org/0000-0002-4706-1308"},"institutions":[{"id":"https://openalex.org/I39555362","display_name":"University of Warwick","ror":"https://ror.org/01a77tt86","country_code":"GB","type":"education","lineage":["https://openalex.org/I39555362"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Nasir M Rajpoot","raw_affiliation_strings":["University of Warwick,Tissue Image Analytics Centre,Department of Computer Science,UK"],"affiliations":[{"raw_affiliation_string":"University of Warwick,Tissue Image Analytics Centre,Department of Computer Science,UK","institution_ids":["https://openalex.org/I39555362"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5041645982","display_name":"Shan E Ahmed Raza","orcid":"https://orcid.org/0000-0002-1097-1738"},"institutions":[{"id":"https://openalex.org/I39555362","display_name":"University of Warwick","ror":"https://ror.org/01a77tt86","country_code":"GB","type":"education","lineage":["https://openalex.org/I39555362"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Shan E Ahmed Raza","raw_affiliation_strings":["University of Warwick,Tissue Image Analytics Centre,Department of Computer Science,UK"],"affiliations":[{"raw_affiliation_string":"University of Warwick,Tissue Image Analytics Centre,Department of Computer Science,UK","institution_ids":["https://openalex.org/I39555362"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":9,"corresponding_author_ids":["https://openalex.org/A5065857176"],"corresponding_institution_ids":["https://openalex.org/I39555362"],"apc_list":null,"apc_paid":null,"fwci":1.5029,"has_fulltext":false,"cited_by_count":5,"citation_normalized_percentile":{"value":0.85286832,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":95,"max":97},"biblio":{"volume":null,"issue":null,"first_page":"1","last_page":"5"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10336","display_name":"Cancer Cells and Metastasis","score":0.9539999961853027,"subfield":{"id":"https://openalex.org/subfields/2730","display_name":"Oncology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10336","display_name":"Cancer Cells and Metastasis","score":0.9539999961853027,"subfield":{"id":"https://openalex.org/subfields/2730","display_name":"Oncology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11016","display_name":"Monoclonal and Polyclonal Antibodies Research","score":0.9455000162124634,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10755","display_name":"HER2/EGFR in Cancer Research","score":0.9348000288009644,"subfield":{"id":"https://openalex.org/subfields/2730","display_name":"Oncology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.6565051674842834},{"id":"https://openalex.org/keywords/breast-cancer","display_name":"Breast cancer","score":0.534430980682373},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5084956884384155},{"id":"https://openalex.org/keywords/cancer","display_name":"Cancer","score":0.4467353820800781},{"id":"https://openalex.org/keywords/pathology","display_name":"Pathology","score":0.37344884872436523},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.36190855503082275},{"id":"https://openalex.org/keywords/oncology","display_name":"Oncology","score":0.326635479927063},{"id":"https://openalex.org/keywords/internal-medicine","display_name":"Internal medicine","score":0.23523017764091492},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.08696562051773071}],"concepts":[{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.6565051674842834},{"id":"https://openalex.org/C530470458","wikidata":"https://www.wikidata.org/wiki/Q128581","display_name":"Breast cancer","level":3,"score":0.534430980682373},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5084956884384155},{"id":"https://openalex.org/C121608353","wikidata":"https://www.wikidata.org/wiki/Q12078","display_name":"Cancer","level":2,"score":0.4467353820800781},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.37344884872436523},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.36190855503082275},{"id":"https://openalex.org/C143998085","wikidata":"https://www.wikidata.org/wiki/Q162555","display_name":"Oncology","level":1,"score":0.326635479927063},{"id":"https://openalex.org/C126322002","wikidata":"https://www.wikidata.org/wiki/Q11180","display_name":"Internal medicine","level":1,"score":0.23523017764091492},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.08696562051773071}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1109/isbi56570.2024.10635302","is_oa":false,"landing_page_url":"https://doi.org/10.1109/isbi56570.2024.10635302","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2024 IEEE International Symposium on Biomedical Imaging (ISBI)","raw_type":"proceedings-article"},{"id":"pmh:oai:wrap.warwick.ac.uk:188128","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4306400665","display_name":"Warwick Research Archive Portal (University of Warwick)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I39555362","host_organization_name":"University of Warwick","host_organization_lineage":["https://openalex.org/I39555362"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"","raw_type":"Conference Item"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Good health and well-being","score":0.47999998927116394,"id":"https://metadata.un.org/sdg/3"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":22,"referenced_works":["https://openalex.org/W1901129140","https://openalex.org/W2112434826","https://openalex.org/W2120431466","https://openalex.org/W2470965540","https://openalex.org/W2592929672","https://openalex.org/W2630837129","https://openalex.org/W2771978163","https://openalex.org/W2922239620","https://openalex.org/W3127751679","https://openalex.org/W3198733165","https://openalex.org/W3206371861","https://openalex.org/W3209908067","https://openalex.org/W4286821862","https://openalex.org/W4296941367","https://openalex.org/W4309915768","https://openalex.org/W4389688203","https://openalex.org/W4400126371","https://openalex.org/W6739696289","https://openalex.org/W6762718338","https://openalex.org/W6790275670","https://openalex.org/W6790534210","https://openalex.org/W6795435739"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W3037187668","https://openalex.org/W4234772502","https://openalex.org/W2380685755","https://openalex.org/W2375584271","https://openalex.org/W1997105855","https://openalex.org/W2252100032","https://openalex.org/W2963436428","https://openalex.org/W2989121736","https://openalex.org/W2892677547"],"abstract_inverted_index":{"Tumour-infiltrating":[0],"lymphocytes":[1],"(TILs)":[2],"are":[3],"considered":[4],"as":[5,95,142],"a":[6,61,74,143],"valuable":[7],"prognostic":[8,146],"markers":[9],"in":[10,57,88,122],"both":[11],"triple-negative":[12],"and":[13,54,92,108,136],"human":[14],"epidermal":[15],"growth":[16],"factor":[17],"receptor":[18],"2":[19],"(HER2)":[20],"positive":[21],"breast":[22,45,144],"cancer.":[23],"In":[24],"this":[25],"study,":[26],"we":[27],"introduce":[28],"an":[29],"innovative":[30],"deep":[31],"learning":[32],"pipeline":[33,141],"based":[34],"on":[35,100,110],"the":[36,41,70,80,101,111,127,133],"Efficient-UNet":[37],"architecture":[38],"to":[39,59],"predict":[40],"TILs":[42,68,75,93,118],"score":[43,76,119],"for":[44],"cancer":[46,145],"whole-slide":[47],"images":[48],"(WSIs).":[49],"We":[50,65],"first":[51],"segment":[52],"tumour":[53,62],"stromal":[55],"regions":[56],"order":[58],"compute":[60],"bulk":[63],"mask.":[64],"then":[66],"detect":[67],"within":[69,126],"tumour-associated":[71],"stroma,":[72],"generating":[73],"by":[77,97],"closely":[78],"mirroring":[79],"pathologist\u2019s":[81],"workflow.":[82],"Our":[83],"method":[84],"exhibits":[85],"state-of-the-art":[86],"performance":[87],"segmenting":[89],"tumour/stroma":[90],"areas":[91],"detection,":[94],"demonstrated":[96],"internal":[98],"cross-validation":[99],"TiGER":[102],"Challenge":[103],"training":[104],"dataset":[105],"(195":[106],"WSIs)":[107],"evaluation":[109],"final":[112],"leaderboards":[113],"(38":[114],"WSIs).":[115],"Additionally,":[116],"our":[117,139],"proves":[120],"competitive":[121],"predicting":[123],"survival":[124],"outcomes":[125],"same":[128],"challenge":[129],"(707":[130],"WSIs),":[131],"underscoring":[132],"clinical":[134],"relevance":[135],"potential":[137],"of":[138],"automated":[140],"tool.":[147]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":3}],"updated_date":"2025-12-26T23:08:49.675405","created_date":"2025-10-10T00:00:00"}
