{"id":"https://openalex.org/W4401753186","doi":"https://doi.org/10.1109/isbi56570.2024.10635226","title":"Topological Analysis of Mouse Brain Vasculature via 3d Light-Sheet Microscopy Images","display_name":"Topological Analysis of Mouse Brain Vasculature via 3d Light-Sheet Microscopy Images","publication_year":2024,"publication_date":"2024-05-27","ids":{"openalex":"https://openalex.org/W4401753186","doi":"https://doi.org/10.1109/isbi56570.2024.10635226"},"language":"en","primary_location":{"id":"doi:10.1109/isbi56570.2024.10635226","is_oa":false,"landing_page_url":"http://dx.doi.org/10.1109/isbi56570.2024.10635226","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2024 IEEE International Symposium on Biomedical Imaging (ISBI)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5019802589","display_name":"Jiachen Yao","orcid":"https://orcid.org/0000-0002-1575-891X"},"institutions":[{"id":"https://openalex.org/I59553526","display_name":"Stony Brook University","ror":"https://ror.org/05qghxh33","country_code":"US","type":"education","lineage":["https://openalex.org/I59553526"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Jiachen Yao","raw_affiliation_strings":["Stony Brook University,Stony Brook,United States"],"affiliations":[{"raw_affiliation_string":"Stony Brook University,Stony Brook,United States","institution_ids":["https://openalex.org/I59553526"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042022671","display_name":"Nina Hagemann","orcid":"https://orcid.org/0000-0002-8098-0402"},"institutions":[{"id":"https://openalex.org/I4210119759","display_name":"Essen University Hospital","ror":"https://ror.org/02na8dn90","country_code":"DE","type":"funder","lineage":["https://openalex.org/I4210119759"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Nina Hagemann","raw_affiliation_strings":["University Hospital Essen,Essen,Germany"],"affiliations":[{"raw_affiliation_string":"University Hospital Essen,Essen,Germany","institution_ids":["https://openalex.org/I4210119759"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000613169","display_name":"Qiaojie Xiong","orcid":"https://orcid.org/0000-0002-9221-860X"},"institutions":[{"id":"https://openalex.org/I59553526","display_name":"Stony Brook University","ror":"https://ror.org/05qghxh33","country_code":"US","type":"education","lineage":["https://openalex.org/I59553526"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Qiaojie Xiong","raw_affiliation_strings":["Stony Brook University,Stony Brook,United States"],"affiliations":[{"raw_affiliation_string":"Stony Brook University,Stony Brook,United States","institution_ids":["https://openalex.org/I59553526"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052870302","display_name":"Jianxu Chen","orcid":"https://orcid.org/0000-0002-8500-1357"},"institutions":[{"id":"https://openalex.org/I4210121365","display_name":"Leibniz Institute for Analytical Sciences - ISAS","ror":"https://ror.org/02jhqqg57","country_code":"DE","type":"facility","lineage":["https://openalex.org/I315704651","https://openalex.org/I4210121365"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Jianxu Chen","raw_affiliation_strings":["Leibniz-Institut F&#x00FC;r Analytische Wissenschaften - ISAS- E.V.,Dortmund,Germany"],"affiliations":[{"raw_affiliation_string":"Leibniz-Institut F&#x00FC;r Analytische Wissenschaften - ISAS- E.V.,Dortmund,Germany","institution_ids":["https://openalex.org/I4210121365"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028410367","display_name":"Dirk M. Hermann","orcid":"https://orcid.org/0000-0003-0198-3152"},"institutions":[{"id":"https://openalex.org/I4210119759","display_name":"Essen University Hospital","ror":"https://ror.org/02na8dn90","country_code":"DE","type":"funder","lineage":["https://openalex.org/I4210119759"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Dirk M. Hermann","raw_affiliation_strings":["University Hospital Essen,Essen,Germany"],"affiliations":[{"raw_affiliation_string":"University Hospital Essen,Essen,Germany","institution_ids":["https://openalex.org/I4210119759"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100408358","display_name":"Chao Chen","orcid":"https://orcid.org/0000-0002-5114-2282"},"institutions":[{"id":"https://openalex.org/I59553526","display_name":"Stony Brook University","ror":"https://ror.org/05qghxh33","country_code":"US","type":"education","lineage":["https://openalex.org/I59553526"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Chao Chen","raw_affiliation_strings":["Stony Brook University,Stony Brook,United States"],"affiliations":[{"raw_affiliation_string":"Stony Brook University,Stony Brook,United States","institution_ids":["https://openalex.org/I59553526"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5019802589"],"corresponding_institution_ids":["https://openalex.org/I59553526"],"apc_list":null,"apc_paid":null,"fwci":0.7031,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.80348837,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":null,"issue":null,"first_page":"1","last_page":"5"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9958000183105469,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9958000183105469,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10540","display_name":"Advanced Fluorescence Microscopy Techniques","score":0.9873999953269958,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12536","display_name":"Topological and Geometric Data Analysis","score":0.9825999736785889,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/light-sheet-fluorescence-microscopy","display_name":"Light sheet fluorescence microscopy","score":0.6133810877799988},{"id":"https://openalex.org/keywords/microscopy","display_name":"Microscopy","score":0.5701971650123596},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4001096487045288},{"id":"https://openalex.org/keywords/topology","display_name":"Topology (electrical circuits)","score":0.3526562452316284},{"id":"https://openalex.org/keywords/computer-vision","display_name":"Computer vision","score":0.32200735807418823},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.2787404954433441},{"id":"https://openalex.org/keywords/optics","display_name":"Optics","score":0.2740130126476288},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.12357732653617859},{"id":"https://openalex.org/keywords/scanning-confocal-electron-microscopy","display_name":"Scanning confocal electron microscopy","score":0.10554030537605286}],"concepts":[{"id":"https://openalex.org/C113976765","wikidata":"https://www.wikidata.org/wiki/Q1823502","display_name":"Light sheet fluorescence microscopy","level":4,"score":0.6133810877799988},{"id":"https://openalex.org/C147080431","wikidata":"https://www.wikidata.org/wiki/Q1074953","display_name":"Microscopy","level":2,"score":0.5701971650123596},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4001096487045288},{"id":"https://openalex.org/C184720557","wikidata":"https://www.wikidata.org/wiki/Q7825049","display_name":"Topology (electrical circuits)","level":2,"score":0.3526562452316284},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.32200735807418823},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.2787404954433441},{"id":"https://openalex.org/C120665830","wikidata":"https://www.wikidata.org/wiki/Q14620","display_name":"Optics","level":1,"score":0.2740130126476288},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.12357732653617859},{"id":"https://openalex.org/C187921700","wikidata":"https://www.wikidata.org/wiki/Q7430074","display_name":"Scanning confocal electron microscopy","level":3,"score":0.10554030537605286},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1109/isbi56570.2024.10635226","is_oa":false,"landing_page_url":"http://dx.doi.org/10.1109/isbi56570.2024.10635226","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2024 IEEE International Symposium on Biomedical Imaging (ISBI)","raw_type":"proceedings-article"},{"id":"pmh:oai:bibliographie.ub.uni-due.de:ubo_mods_00224687","is_oa":false,"landing_page_url":"https://doi.org/10.1109/ISBI56570.2024.10635226","pdf_url":null,"source":{"id":"https://openalex.org/S7407055102","display_name":"Universit\u00e4tsbibliographie, Universit\u00e4t Duisburg-Essen","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Buchaufsatz/Kapitel"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":16,"referenced_works":["https://openalex.org/W2048893204","https://openalex.org/W2067028731","https://openalex.org/W2078241081","https://openalex.org/W2163234334","https://openalex.org/W2163552968","https://openalex.org/W2759050422","https://openalex.org/W2964209273","https://openalex.org/W3012387312","https://openalex.org/W3013843370","https://openalex.org/W3042793130","https://openalex.org/W3177682658","https://openalex.org/W4213033583","https://openalex.org/W4221107771","https://openalex.org/W4223544586","https://openalex.org/W4255383393","https://openalex.org/W4327750150"],"related_works":["https://openalex.org/W2094643072","https://openalex.org/W2586711169","https://openalex.org/W2793462084","https://openalex.org/W2417615065","https://openalex.org/W2321054121","https://openalex.org/W2411218469","https://openalex.org/W2337932973","https://openalex.org/W2949750374","https://openalex.org/W2796297259","https://openalex.org/W2979590197"],"abstract_inverted_index":{"Vascular":[0],"networks":[1],"play":[2],"a":[3,61,113],"crucial":[4,20],"role":[5],"in":[6,36,57,157],"understanding":[7],"brain":[8,55,110,142],"functionalities.":[9],"Brain":[10],"integrity":[11],"and":[12,16,52,73,135,145,148],"function,":[13],"neuronal":[14],"activity":[15],"plasticity,":[17],"which":[18],"are":[19,23],"for":[21,64],"learning,":[22],"actively":[24],"modulated":[25],"by":[26],"their":[27,154],"local":[28],"environments,":[29],"specifically":[30],"vascular":[31],"networks.":[32],"With":[33],"recent":[34],"developments":[35],"high-resolution":[37],"3D":[38],"light-sheet":[39],"microscopy":[40],"imaging":[41],"together":[42],"with":[43],"tissue":[44],"processing":[45],"techniques,":[46],"it":[47],"becomes":[48],"feasible":[49],"to":[50],"obtain":[51],"examine":[53],"large-scale":[54],"vasculature":[56,111],"mice.":[58],"To":[59],"establish":[60],"structural":[62,74,92,138],"foundation":[63],"functional":[65],"study,":[66],"however,":[67],"we":[68,105],"need":[69],"advanced":[70],"image":[71],"analysis":[72],"modeling":[75],"methods.Existing":[76],"works":[77],"use":[78],"geometric":[79,87],"features":[80,88,119,139],"such":[81,94],"as":[82,95],"thickness,":[83],"tortuosity,":[84],"etc.":[85,101],"However,":[86],"cannot":[89],"fully":[90],"capture":[91],"characteristics":[93],"the":[96,107,125],"richness":[97],"of":[98,109,127,132],"branches,":[99],"connectivity,":[100],"In":[102],"this":[103],"paper,":[104],"study":[106],"morphology":[108],"through":[112],"topological":[114,118,128,137],"lens.":[115],"We":[116],"extract":[117],"<sup":[120],"xmlns:mml=\"http://www.w3.org/1998/Math/MathML\"":[121],"xmlns:xlink=\"http://www.w3.org/1999/xlink\">1</sup>":[122],"based":[123],"on":[124,153],"theory":[126],"data":[129],"analysis.":[130],"Comparing":[131],"these":[133],"robust":[134],"multi-scale":[136],"across":[140],"different":[141],"anatomical":[143],"structures":[144],"between":[146],"normal":[147],"obese":[149],"populations":[150],"sheds":[151],"light":[152],"promising":[155],"future":[156],"studying":[158],"neurological":[159],"diseases.":[160]},"counts_by_year":[{"year":2024,"cited_by_count":1}],"updated_date":"2026-03-02T08:37:19.008085","created_date":"2025-10-10T00:00:00"}
