{"id":"https://openalex.org/W4386362543","doi":"https://doi.org/10.1109/isbi53787.2023.10230520","title":"Pushing the Limits of an FCN and A CRF Towards Near-Ideal Vertebrae Labelling","display_name":"Pushing the Limits of an FCN and A CRF Towards Near-Ideal Vertebrae Labelling","publication_year":2023,"publication_date":"2023-04-18","ids":{"openalex":"https://openalex.org/W4386362543","doi":"https://doi.org/10.1109/isbi53787.2023.10230520"},"language":"en","primary_location":{"id":"doi:10.1109/isbi53787.2023.10230520","is_oa":false,"landing_page_url":"http://dx.doi.org/10.1109/isbi53787.2023.10230520","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2023 IEEE 20th International Symposium on Biomedical Imaging (ISBI)","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5087664142","display_name":"Anjany Sekuboyina","orcid":"https://orcid.org/0000-0002-5601-284X"},"institutions":[{"id":"https://openalex.org/I202697423","display_name":"University of Zurich","ror":"https://ror.org/02crff812","country_code":"CH","type":"education","lineage":["https://openalex.org/I202697423"]},{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["CH","DE"],"is_corresponding":false,"raw_author_name":"Anjany Sekuboyina","raw_affiliation_strings":["University of Zurich,Switzerland","Technical University of Munich, Germany","University of Zurich, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Zurich,Switzerland","institution_ids":["https://openalex.org/I202697423"]},{"raw_affiliation_string":"Technical University of Munich, Germany","institution_ids":["https://openalex.org/I62916508"]},{"raw_affiliation_string":"University of Zurich, Switzerland","institution_ids":["https://openalex.org/I202697423"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066345488","display_name":"Jannik Irmai","orcid":null},"institutions":[{"id":"https://openalex.org/I78650965","display_name":"Technische Universit\u00e4t Dresden","ror":"https://ror.org/042aqky30","country_code":"DE","type":"education","lineage":["https://openalex.org/I78650965"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Jannik Irmai","raw_affiliation_strings":["Technical University of Dresden,Germany","Technical University of Dresden, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Technical University of Dresden,Germany","institution_ids":["https://openalex.org/I78650965"]},{"raw_affiliation_string":"Technical University of Dresden, Germany","institution_ids":["https://openalex.org/I78650965"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5018632773","display_name":"Suprosanna Shit","orcid":"https://orcid.org/0000-0003-4435-7207"},"institutions":[{"id":"https://openalex.org/I202697423","display_name":"University of Zurich","ror":"https://ror.org/02crff812","country_code":"CH","type":"education","lineage":["https://openalex.org/I202697423"]},{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["CH","DE"],"is_corresponding":false,"raw_author_name":"Suprosanna Shit","raw_affiliation_strings":["University of Zurich,Switzerland","Technical University of Munich, Germany","University of Zurich, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Zurich,Switzerland","institution_ids":["https://openalex.org/I202697423"]},{"raw_affiliation_string":"Technical University of Munich, Germany","institution_ids":["https://openalex.org/I62916508"]},{"raw_affiliation_string":"University of Zurich, Switzerland","institution_ids":["https://openalex.org/I202697423"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003938965","display_name":"Jan S. Kirschke","orcid":"https://orcid.org/0000-0002-7557-0003"},"institutions":[{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Jan Kirschke","raw_affiliation_strings":["Technical University of Munich,Germany","Technical University of Munich, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Technical University of Munich,Germany","institution_ids":["https://openalex.org/I62916508"]},{"raw_affiliation_string":"Technical University of Munich, Germany","institution_ids":["https://openalex.org/I62916508"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087002212","display_name":"Bjoern Andres","orcid":"https://orcid.org/0000-0001-5036-9162"},"institutions":[{"id":"https://openalex.org/I78650965","display_name":"Technische Universit\u00e4t Dresden","ror":"https://ror.org/042aqky30","country_code":"DE","type":"education","lineage":["https://openalex.org/I78650965"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Bjoern Andres","raw_affiliation_strings":["Technical University of Dresden,Germany","Technical University of Dresden, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Technical University of Dresden,Germany","institution_ids":["https://openalex.org/I78650965"]},{"raw_affiliation_string":"Technical University of Dresden, Germany","institution_ids":["https://openalex.org/I78650965"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5002068604","display_name":"Bjoern Menze","orcid":"https://orcid.org/0000-0003-4136-5690"},"institutions":[{"id":"https://openalex.org/I202697423","display_name":"University of Zurich","ror":"https://ror.org/02crff812","country_code":"CH","type":"education","lineage":["https://openalex.org/I202697423"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Bjoern Menze","raw_affiliation_strings":["University of Zurich,Switzerland","University of Zurich, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Zurich,Switzerland","institution_ids":["https://openalex.org/I202697423"]},{"raw_affiliation_string":"University of Zurich, Switzerland","institution_ids":["https://openalex.org/I202697423"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":"39","issue":null,"first_page":"1","last_page":"5"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T14510","display_name":"Medical Imaging and Analysis","score":1.0,"subfield":{"id":"https://openalex.org/subfields/2204","display_name":"Biomedical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T14510","display_name":"Medical Imaging and Analysis","score":1.0,"subfield":{"id":"https://openalex.org/subfields/2204","display_name":"Biomedical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11363","display_name":"Dental Radiography and Imaging","score":0.9907000064849854,"subfield":{"id":"https://openalex.org/subfields/3504","display_name":"Oral Surgery"},"field":{"id":"https://openalex.org/fields/35","display_name":"Dentistry"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11636","display_name":"Artificial Intelligence in Healthcare and Education","score":0.9850000143051147,"subfield":{"id":"https://openalex.org/subfields/2718","display_name":"Health Informatics"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7641974687576294},{"id":"https://openalex.org/keywords/conditional-random-field","display_name":"Conditional random field","score":0.6864751577377319},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.6678065657615662},{"id":"https://openalex.org/keywords/convolutional-neural-network","display_name":"Convolutional neural network","score":0.5783563256263733},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.5577391982078552},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.532421350479126},{"id":"https://openalex.org/keywords/benchmark","display_name":"Benchmark (surveying)","score":0.5224915146827698},{"id":"https://openalex.org/keywords/deep-learning","display_name":"Deep learning","score":0.4804801046848297},{"id":"https://openalex.org/keywords/labelling","display_name":"Labelling","score":0.47225135564804077},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.33825984597206116},{"id":"https://openalex.org/keywords/computer-vision","display_name":"Computer vision","score":0.3259109556674957}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7641974687576294},{"id":"https://openalex.org/C152565575","wikidata":"https://www.wikidata.org/wiki/Q1124538","display_name":"Conditional random field","level":2,"score":0.6864751577377319},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6678065657615662},{"id":"https://openalex.org/C81363708","wikidata":"https://www.wikidata.org/wiki/Q17084460","display_name":"Convolutional neural network","level":2,"score":0.5783563256263733},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.5577391982078552},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.532421350479126},{"id":"https://openalex.org/C185798385","wikidata":"https://www.wikidata.org/wiki/Q1161707","display_name":"Benchmark (surveying)","level":2,"score":0.5224915146827698},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.4804801046848297},{"id":"https://openalex.org/C2780523633","wikidata":"https://www.wikidata.org/wiki/Q380709","display_name":"Labelling","level":2,"score":0.47225135564804077},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.33825984597206116},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.3259109556674957},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0},{"id":"https://openalex.org/C13280743","wikidata":"https://www.wikidata.org/wiki/Q131089","display_name":"Geodesy","level":1,"score":0.0},{"id":"https://openalex.org/C73484699","wikidata":"https://www.wikidata.org/wiki/Q161733","display_name":"Criminology","level":1,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/isbi53787.2023.10230520","is_oa":false,"landing_page_url":"http://dx.doi.org/10.1109/isbi53787.2023.10230520","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2023 IEEE 20th International Symposium on Biomedical Imaging (ISBI)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":17,"referenced_works":["https://openalex.org/W2120340025","https://openalex.org/W2886281300","https://openalex.org/W2925288829","https://openalex.org/W2928374940","https://openalex.org/W2952939839","https://openalex.org/W2953532875","https://openalex.org/W2957485116","https://openalex.org/W2964253475","https://openalex.org/W2984645840","https://openalex.org/W3014641072","https://openalex.org/W3046053509","https://openalex.org/W3097781047","https://openalex.org/W3101088356","https://openalex.org/W3112346810","https://openalex.org/W3207601934","https://openalex.org/W6678397451","https://openalex.org/W6765276222"],"related_works":["https://openalex.org/W1525479493","https://openalex.org/W1976633635","https://openalex.org/W2396436470","https://openalex.org/W4226493464","https://openalex.org/W4312417841","https://openalex.org/W3133861977","https://openalex.org/W2951211570","https://openalex.org/W3103566983","https://openalex.org/W3167935049","https://openalex.org/W3029198973"],"abstract_inverted_index":{"In":[0],"this":[1,151],"work,":[2],"we":[3,31,80,121],"propose":[4],"a":[5,12,18,25,63,73,82],"simple":[6],"pipeline":[7],"for":[8,67,110,150],"labelling":[9,108],"vertebrae":[10],"in":[11,49,72,106,145],"spine":[13,40],"CT":[14,41],"image":[15],"composed":[16],"of":[17,57,91],"fully":[19,68],"convolutional":[20],"neural":[21],"network":[22,35],"(FCN)":[23],"and":[24,43],"conditional":[26],"random":[27],"field":[28],"(CRF).":[29],"Firstly,":[30],"adapt":[32],"the":[33,58,87,92,96,131],"high-resolution":[34],"to":[36,52,76,126],"work":[37,152],"on":[38,86,130],"three-dimensional":[39],"images":[42],"train":[44],"them":[45],"with":[46,141],"recent":[47],"advances":[48],"deep":[50],"learning":[51],"regress":[53],"spatial":[54],"likelihood":[55,89],"maps":[56,90],"vertebral":[59],"locations.":[60],"This":[61,135],"sets":[62],"strong":[64],"baseline":[65],"performance":[66,74],"automated":[69,107],"identification,":[70],"resulting":[71],"comparable":[75],"prior":[77],"state-of-art.":[78],"Secondly,":[79],"employ":[81],"prior-informed":[83],"CRF":[84,132],"conditioned":[85],"predicted":[88],"HRNet,":[93],"thus":[94],"refining":[95],"location":[97],"predictions.":[98],"Our":[99],"custom":[100],"FCN-CRF":[101],"solution":[102,137],"produces":[103],"state-of-the-art":[104],"results":[105],"tasks":[109],"three":[111],"benchmark":[112],"datasets":[113],"achieving":[114],"identification":[115,140],"rates":[116],"higher":[117],"than":[118],"97%.":[119],"Finally,":[120],"design":[122],"an":[123],"interaction":[124,143],"module":[125],"perform":[127],"drag-and-drop":[128],"correction":[129],"output":[133],"graph.":[134],"semi-automated":[136],"achieves":[138],"near-100%":[139],"minimal":[142],"(measured":[144],"actions":[146],"per":[147],"scan).":[148],"Code":[149],"is":[153],"published":[154],"at":[155],"https://github.com/JannikIrmai/interactive-fcn-crf.":[156]},"counts_by_year":[{"year":2024,"cited_by_count":1}],"updated_date":"2026-07-28T07:46:37.118299","created_date":"2025-10-10T00:00:00"}
