{"id":"https://openalex.org/W4386362659","doi":"https://doi.org/10.1109/isbi53787.2023.10230343","title":"Clinically Relevant Latent Space Embedding of Cancer Histopathology Slides Through Variational Autoencoder based Image Compression","display_name":"Clinically Relevant Latent Space Embedding of Cancer Histopathology Slides Through Variational Autoencoder based Image Compression","publication_year":2023,"publication_date":"2023-04-18","ids":{"openalex":"https://openalex.org/W4386362659","doi":"https://doi.org/10.1109/isbi53787.2023.10230343"},"language":"en","primary_location":{"id":"doi:10.1109/isbi53787.2023.10230343","is_oa":false,"landing_page_url":"https://doi.org/10.1109/isbi53787.2023.10230343","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2023 IEEE 20th International Symposium on Biomedical Imaging (ISBI)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5087719124","display_name":"Mohammad Sadegh Nasr","orcid":"https://orcid.org/0000-0001-9675-5640"},"institutions":[{"id":"https://openalex.org/I189196454","display_name":"The University of Texas at Arlington","ror":"https://ror.org/019kgqr73","country_code":"US","type":"education","lineage":["https://openalex.org/I189196454"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Mohammad Sadegh Nasr","raw_affiliation_strings":["University of Texas at Arlington,Department of Computer Science and Engineering","Multi-Interprofessional Center for Health Informatics, University of Texas at Arlington","Department of Computer Science and Engineering, University of Texas at Arlington"],"affiliations":[{"raw_affiliation_string":"University of Texas at Arlington,Department of Computer Science and Engineering","institution_ids":["https://openalex.org/I189196454"]},{"raw_affiliation_string":"Multi-Interprofessional Center for Health Informatics, University of Texas at Arlington","institution_ids":["https://openalex.org/I189196454"]},{"raw_affiliation_string":"Department of Computer Science and Engineering, University of Texas at Arlington","institution_ids":["https://openalex.org/I189196454"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060444217","display_name":"Amir Hajighasemi","orcid":"https://orcid.org/0009-0007-4467-4209"},"institutions":[{"id":"https://openalex.org/I189196454","display_name":"The University of Texas at Arlington","ror":"https://ror.org/019kgqr73","country_code":"US","type":"education","lineage":["https://openalex.org/I189196454"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Amir Hajighasemi","raw_affiliation_strings":["University of Texas at Arlington,Department of Computer Science and Engineering","Multi-Interprofessional Center for Health Informatics, University of Texas at Arlington","Department of Computer Science and Engineering, University of Texas at Arlington"],"affiliations":[{"raw_affiliation_string":"University of Texas at Arlington,Department of Computer Science and Engineering","institution_ids":["https://openalex.org/I189196454"]},{"raw_affiliation_string":"Multi-Interprofessional Center for Health Informatics, University of Texas at Arlington","institution_ids":["https://openalex.org/I189196454"]},{"raw_affiliation_string":"Department of Computer Science and Engineering, University of Texas at Arlington","institution_ids":["https://openalex.org/I189196454"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002534871","display_name":"Paul Koomey","orcid":null},"institutions":[{"id":"https://openalex.org/I189196454","display_name":"The University of Texas at Arlington","ror":"https://ror.org/019kgqr73","country_code":"US","type":"education","lineage":["https://openalex.org/I189196454"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Paul Koomey","raw_affiliation_strings":["University of Texas at Arlington,Department of Computer Science and Engineering","Multi-Interprofessional Center for Health Informatics, University of Texas at Arlington","Department of Computer Science and Engineering, University of Texas at Arlington"],"affiliations":[{"raw_affiliation_string":"University of Texas at Arlington,Department of Computer Science and Engineering","institution_ids":["https://openalex.org/I189196454"]},{"raw_affiliation_string":"Multi-Interprofessional Center for Health Informatics, University of Texas at Arlington","institution_ids":["https://openalex.org/I189196454"]},{"raw_affiliation_string":"Department of Computer Science and Engineering, University of Texas at Arlington","institution_ids":["https://openalex.org/I189196454"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5112755627","display_name":"Parisa Boodaghi Malidarreh","orcid":null},"institutions":[{"id":"https://openalex.org/I189196454","display_name":"The University of Texas at Arlington","ror":"https://ror.org/019kgqr73","country_code":"US","type":"education","lineage":["https://openalex.org/I189196454"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Parisa Boodaghi Malidarreh","raw_affiliation_strings":["University of Texas at Arlington,Department of Computer Science and Engineering","Multi-Interprofessional Center for Health Informatics, University of Texas at Arlington","Department of Computer Science and Engineering, University of Texas at Arlington"],"affiliations":[{"raw_affiliation_string":"University of Texas at Arlington,Department of Computer Science and Engineering","institution_ids":["https://openalex.org/I189196454"]},{"raw_affiliation_string":"Multi-Interprofessional Center for Health Informatics, University of Texas at Arlington","institution_ids":["https://openalex.org/I189196454"]},{"raw_affiliation_string":"Department of Computer Science and Engineering, University of Texas at Arlington","institution_ids":["https://openalex.org/I189196454"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055147695","display_name":"Michael Robben","orcid":"https://orcid.org/0000-0002-5322-9947"},"institutions":[{"id":"https://openalex.org/I189196454","display_name":"The University of Texas at Arlington","ror":"https://ror.org/019kgqr73","country_code":"US","type":"education","lineage":["https://openalex.org/I189196454"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Michael Robben","raw_affiliation_strings":["University of Texas at Arlington,Multi-Interprofessional Center for Health Informatics","Multi-Interprofessional Center for Health Informatics, University of Texas at Arlington","Department of Bioengineering, University of Texas at Arlington"],"affiliations":[{"raw_affiliation_string":"University of Texas at Arlington,Multi-Interprofessional Center for Health Informatics","institution_ids":["https://openalex.org/I189196454"]},{"raw_affiliation_string":"Multi-Interprofessional Center for Health Informatics, University of Texas at Arlington","institution_ids":["https://openalex.org/I189196454"]},{"raw_affiliation_string":"Department of Bioengineering, University of Texas at Arlington","institution_ids":["https://openalex.org/I189196454"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023922327","display_name":"Jillur Rahman Saurav","orcid":"https://orcid.org/0000-0001-7451-9962"},"institutions":[{"id":"https://openalex.org/I189196454","display_name":"The University of Texas at Arlington","ror":"https://ror.org/019kgqr73","country_code":"US","type":"education","lineage":["https://openalex.org/I189196454"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jillur Rahman Saurav","raw_affiliation_strings":["University of Texas at Arlington,Department of Computer Science and Engineering","Department of Computer Science and Engineering, University of Texas at Arlington","Multi-Interprofessional Center for Health Informatics, University of Texas at Arlington"],"affiliations":[{"raw_affiliation_string":"University of Texas at Arlington,Department of Computer Science and Engineering","institution_ids":["https://openalex.org/I189196454"]},{"raw_affiliation_string":"Department of Computer Science and Engineering, University of Texas at Arlington","institution_ids":["https://openalex.org/I189196454"]},{"raw_affiliation_string":"Multi-Interprofessional Center for Health Informatics, University of Texas at Arlington","institution_ids":["https://openalex.org/I189196454"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5022943841","display_name":"Helen H. Shang","orcid":"https://orcid.org/0000-0002-4684-6859"},"institutions":[{"id":"https://openalex.org/I189196454","display_name":"The University of Texas at Arlington","ror":"https://ror.org/019kgqr73","country_code":"US","type":"education","lineage":["https://openalex.org/I189196454"]},{"id":"https://openalex.org/I2801272649","display_name":"Ronald Reagan UCLA Medical Center","ror":"https://ror.org/04k3jt835","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I2799798094","https://openalex.org/I2801272649"]},{"id":"https://openalex.org/I4210096972","display_name":"Los Angeles Medical Center","ror":"https://ror.org/00spys463","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1343052199","https://openalex.org/I4210096972"]},{"id":"https://openalex.org/I161318765","display_name":"University of California, Los Angeles","ror":"https://ror.org/046rm7j60","country_code":"US","type":"education","lineage":["https://openalex.org/I161318765"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Helen H Shang","raw_affiliation_strings":["University of Texas at Arlington,Department of Computer Science and Engineering","Division of Internal Medicine, Ronald Reagan University of California Los Angeles Medical Center","Department of Computer Science and Engineering, University of Texas at Arlington"],"affiliations":[{"raw_affiliation_string":"University of Texas at Arlington,Department of Computer Science and Engineering","institution_ids":["https://openalex.org/I189196454"]},{"raw_affiliation_string":"Division of Internal Medicine, Ronald Reagan University of California Los Angeles Medical Center","institution_ids":["https://openalex.org/I2801272649","https://openalex.org/I4210096972","https://openalex.org/I161318765"]},{"raw_affiliation_string":"Department of Computer Science and Engineering, University of Texas at Arlington","institution_ids":["https://openalex.org/I189196454"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5047174917","display_name":"Manfred Huber","orcid":"https://orcid.org/0009-0007-0294-9147"},"institutions":[{"id":"https://openalex.org/I189196454","display_name":"The University of Texas at Arlington","ror":"https://ror.org/019kgqr73","country_code":"US","type":"education","lineage":["https://openalex.org/I189196454"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Manfred Huber","raw_affiliation_strings":["University of Texas at Arlington,Department of Computer Science and Engineering","Department of Computer Science and Engineering, University of Texas at Arlington"],"affiliations":[{"raw_affiliation_string":"University of Texas at Arlington,Department of Computer Science and Engineering","institution_ids":["https://openalex.org/I189196454"]},{"raw_affiliation_string":"Department of Computer Science and Engineering, University of Texas at Arlington","institution_ids":["https://openalex.org/I189196454"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5013180076","display_name":"Jacob M. Luber","orcid":"https://orcid.org/0000-0001-5268-5732"},"institutions":[{"id":"https://openalex.org/I189196454","display_name":"The University of Texas at Arlington","ror":"https://ror.org/019kgqr73","country_code":"US","type":"education","lineage":["https://openalex.org/I189196454"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jacob M. Luber","raw_affiliation_strings":["University of Texas at Arlington,Department of Computer Science and Engineering","Department of Bioengineering, University of Texas at Arlington","Multi-Interprofessional Center for Health Informatics, University of Texas at Arlington","Department of Computer Science and Engineering, University of Texas at Arlington"],"affiliations":[{"raw_affiliation_string":"University of Texas at Arlington,Department of Computer Science and Engineering","institution_ids":["https://openalex.org/I189196454"]},{"raw_affiliation_string":"Department of Bioengineering, University of Texas at Arlington","institution_ids":["https://openalex.org/I189196454"]},{"raw_affiliation_string":"Multi-Interprofessional Center for Health Informatics, University of Texas at Arlington","institution_ids":["https://openalex.org/I189196454"]},{"raw_affiliation_string":"Department of Computer Science and Engineering, University of Texas at Arlington","institution_ids":["https://openalex.org/I189196454"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":9,"corresponding_author_ids":["https://openalex.org/A5087719124"],"corresponding_institution_ids":["https://openalex.org/I189196454"],"apc_list":null,"apc_paid":null,"fwci":0.8741,"has_fulltext":false,"cited_by_count":5,"citation_normalized_percentile":{"value":0.78855547,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":96},"biblio":{"volume":null,"issue":null,"first_page":"1","last_page":"5"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10862","display_name":"AI in cancer detection","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10862","display_name":"AI in cancer detection","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10775","display_name":"Generative Adversarial Networks and Image Synthesis","score":0.9969000220298767,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11105","display_name":"Advanced Image Processing Techniques","score":0.9832000136375427,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/autoencoder","display_name":"Autoencoder","score":0.886090874671936},{"id":"https://openalex.org/keywords/embedding","display_name":"Embedding","score":0.734013020992279},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6836518049240112},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.6537989377975464},{"id":"https://openalex.org/keywords/compression","display_name":"Compression (physics)","score":0.6116006374359131},{"id":"https://openalex.org/keywords/data-compression","display_name":"Data compression","score":0.5471651554107666},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.5346747040748596},{"id":"https://openalex.org/keywords/image-compression","display_name":"Image compression","score":0.5020253658294678},{"id":"https://openalex.org/keywords/image","display_name":"Image (mathematics)","score":0.46137699484825134},{"id":"https://openalex.org/keywords/compression-ratio","display_name":"Compression ratio","score":0.42724642157554626},{"id":"https://openalex.org/keywords/space","display_name":"Space (punctuation)","score":0.41793346405029297},{"id":"https://openalex.org/keywords/computer-vision","display_name":"Computer vision","score":0.4069310426712036},{"id":"https://openalex.org/keywords/deep-learning","display_name":"Deep learning","score":0.175115704536438},{"id":"https://openalex.org/keywords/image-processing","display_name":"Image processing","score":0.1744602620601654}],"concepts":[{"id":"https://openalex.org/C101738243","wikidata":"https://www.wikidata.org/wiki/Q786435","display_name":"Autoencoder","level":3,"score":0.886090874671936},{"id":"https://openalex.org/C41608201","wikidata":"https://www.wikidata.org/wiki/Q980509","display_name":"Embedding","level":2,"score":0.734013020992279},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6836518049240112},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6537989377975464},{"id":"https://openalex.org/C180016635","wikidata":"https://www.wikidata.org/wiki/Q2712821","display_name":"Compression (physics)","level":2,"score":0.6116006374359131},{"id":"https://openalex.org/C78548338","wikidata":"https://www.wikidata.org/wiki/Q2493","display_name":"Data compression","level":2,"score":0.5471651554107666},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.5346747040748596},{"id":"https://openalex.org/C13481523","wikidata":"https://www.wikidata.org/wiki/Q412438","display_name":"Image compression","level":4,"score":0.5020253658294678},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.46137699484825134},{"id":"https://openalex.org/C25797200","wikidata":"https://www.wikidata.org/wiki/Q828137","display_name":"Compression ratio","level":3,"score":0.42724642157554626},{"id":"https://openalex.org/C2778572836","wikidata":"https://www.wikidata.org/wiki/Q380933","display_name":"Space (punctuation)","level":2,"score":0.41793346405029297},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.4069310426712036},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.175115704536438},{"id":"https://openalex.org/C9417928","wikidata":"https://www.wikidata.org/wiki/Q1070689","display_name":"Image processing","level":3,"score":0.1744602620601654},{"id":"https://openalex.org/C159985019","wikidata":"https://www.wikidata.org/wiki/Q181790","display_name":"Composite material","level":1,"score":0.0},{"id":"https://openalex.org/C192562407","wikidata":"https://www.wikidata.org/wiki/Q228736","display_name":"Materials science","level":0,"score":0.0},{"id":"https://openalex.org/C171146098","wikidata":"https://www.wikidata.org/wiki/Q124192","display_name":"Automotive engineering","level":1,"score":0.0},{"id":"https://openalex.org/C511840579","wikidata":"https://www.wikidata.org/wiki/Q12757","display_name":"Internal combustion engine","level":2,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/isbi53787.2023.10230343","is_oa":false,"landing_page_url":"https://doi.org/10.1109/isbi53787.2023.10230343","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2023 IEEE 20th International Symposium on Biomedical Imaging (ISBI)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320308129","display_name":"Cancer Prevention and Research Institute of Texas","ror":"https://ror.org/0003xa228"},{"id":"https://openalex.org/F4320309536","display_name":"University of Texas System","ror":"https://ror.org/01gek1696"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":20,"referenced_works":["https://openalex.org/W1959608418","https://openalex.org/W1965451568","https://openalex.org/W1971072543","https://openalex.org/W2098149617","https://openalex.org/W2103243046","https://openalex.org/W2113275188","https://openalex.org/W2194775991","https://openalex.org/W2786672974","https://openalex.org/W2893153797","https://openalex.org/W2900118953","https://openalex.org/W2988036615","https://openalex.org/W3037731665","https://openalex.org/W3118608800","https://openalex.org/W3134748538","https://openalex.org/W3135547872","https://openalex.org/W3193853809","https://openalex.org/W4212843676","https://openalex.org/W4304084212","https://openalex.org/W4376112629","https://openalex.org/W6771018969"],"related_works":["https://openalex.org/W2386366915","https://openalex.org/W2953482628","https://openalex.org/W4383723869","https://openalex.org/W2022517628","https://openalex.org/W2129829718","https://openalex.org/W2161302774","https://openalex.org/W4220868150","https://openalex.org/W2388481516","https://openalex.org/W2521595930","https://openalex.org/W4384298135"],"abstract_inverted_index":{"In":[0],"this":[1,70],"paper,":[2],"we":[3,64],"introduce":[4],"a":[5,21],"Variational":[6],"Autoencoder":[7],"(VAE)":[8],"based":[9],"training":[10],"approach":[11,51],"that":[12],"can":[13,110],"compress":[14],"and":[15,63,83,91,102],"decompress":[16],"cancer":[17,74],"pathology":[18],"slides":[19],"at":[20],"compression":[22,50,71],"ratio":[23,72],"of":[24,34,100,116],"1:512,":[25],"which":[26,66],"is":[27],"better":[28],"than":[29],"the":[30,35,39,87,105],"previously":[31],"reported":[32],"state":[33],"art":[36],"(SOTA)":[37],"in":[38,45,104],"literature,":[40],"while":[41],"still":[42],"maintaining":[43],"accuracy":[44],"clinical":[46,98,117],"validation":[47],"tasks.":[48],"The":[49],"was":[52],"tested":[53],"on":[54,73],"more":[55],"common":[56],"computer":[57],"vision":[58],"datasets":[59],"such":[60,107],"as":[61],"CIFAR10,":[62],"explore":[65],"image":[67],"characteristics":[68],"enable":[69],"imaging":[75,118],"data":[76],"but":[77],"not":[78],"generic":[79],"images.":[80],"We":[81],"generate":[82],"visualize":[84],"embeddings":[85,109],"from":[86],"compressed":[88],"latent":[89,108],"space":[90],"demonstrate":[92],"how":[93,103],"they":[94],"are":[95],"useful":[96],"for":[97],"interpretation":[99],"data,":[101],"future":[106],"be":[111],"used":[112],"to":[113],"accelerate":[114],"search":[115],"data.":[119]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":2}],"updated_date":"2026-01-13T01:12:25.745995","created_date":"2023-09-02T00:00:00"}
