{"id":"https://openalex.org/W4225012747","doi":"https://doi.org/10.1109/isbi52829.2022.9761551","title":"EG-Trans3DUNet: A Single-Staged Transformer-Based Model for Accurate Vertebrae Segmentation from Spinal Ct Images","display_name":"EG-Trans3DUNet: A Single-Staged Transformer-Based Model for Accurate Vertebrae Segmentation from Spinal Ct Images","publication_year":2022,"publication_date":"2022-03-28","ids":{"openalex":"https://openalex.org/W4225012747","doi":"https://doi.org/10.1109/isbi52829.2022.9761551"},"language":"en","primary_location":{"id":"doi:10.1109/isbi52829.2022.9761551","is_oa":false,"landing_page_url":"https://doi.org/10.1109/isbi52829.2022.9761551","pdf_url":null,"source":{"id":"https://openalex.org/S4363605129","display_name":"2022 IEEE 19th International Symposium on Biomedical Imaging (ISBI)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"conference"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2022 IEEE 19th International Symposium on Biomedical Imaging (ISBI)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100683035","display_name":"Xin You","orcid":"https://orcid.org/0009-0008-1973-2101"},"institutions":[{"id":"https://openalex.org/I183067930","display_name":"Shanghai Jiao Tong University","ror":"https://ror.org/0220qvk04","country_code":"CN","type":"education","lineage":["https://openalex.org/I183067930"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Xin You","raw_affiliation_strings":["Shanghai Jiao Tong University,Institute of Image Processing and Pattern Recognition,Shanghai,China","Institute of Image Processing and Pattern Recognition, Shanghai Jiao Tong University, Shanghai, China","Institute of Medical Robotics, Shanghai Jiao Tong University, Shanghai, China"],"affiliations":[{"raw_affiliation_string":"Shanghai Jiao Tong University,Institute of Image Processing and Pattern Recognition,Shanghai,China","institution_ids":["https://openalex.org/I183067930"]},{"raw_affiliation_string":"Institute of Image Processing and Pattern Recognition, Shanghai Jiao Tong University, Shanghai, China","institution_ids":["https://openalex.org/I183067930"]},{"raw_affiliation_string":"Institute of Medical Robotics, Shanghai Jiao Tong University, Shanghai, China","institution_ids":["https://openalex.org/I183067930"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061924699","display_name":"Yun Gu","orcid":"https://orcid.org/0000-0002-4199-0675"},"institutions":[{"id":"https://openalex.org/I183067930","display_name":"Shanghai Jiao Tong University","ror":"https://ror.org/0220qvk04","country_code":"CN","type":"education","lineage":["https://openalex.org/I183067930"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yun Gu","raw_affiliation_strings":["Shanghai Jiao Tong University,Institute of Image Processing and Pattern Recognition,Shanghai,China","Institute of Image Processing and Pattern Recognition, Shanghai Jiao Tong University, Shanghai, China","Institute of Medical Robotics, Shanghai Jiao Tong University, Shanghai, China"],"affiliations":[{"raw_affiliation_string":"Shanghai Jiao Tong University,Institute of Image Processing and Pattern Recognition,Shanghai,China","institution_ids":["https://openalex.org/I183067930"]},{"raw_affiliation_string":"Institute of Image Processing and Pattern Recognition, Shanghai Jiao Tong University, Shanghai, China","institution_ids":["https://openalex.org/I183067930"]},{"raw_affiliation_string":"Institute of Medical Robotics, Shanghai Jiao Tong University, Shanghai, China","institution_ids":["https://openalex.org/I183067930"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100323602","display_name":"Yingying Liu","orcid":"https://orcid.org/0000-0003-0053-7943"},"institutions":[{"id":"https://openalex.org/I4210120746","display_name":"Medtronic (China)","ror":"https://ror.org/02m7bcm44","country_code":"CN","type":"company","lineage":["https://openalex.org/I4210120746"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yingying Liu","raw_affiliation_strings":["Medtronic Technology Center,Research, Technology and Clinical,Shanghai,China","Research, Technology and Clinical, Medtronic Technology Center, Shanghai, China"],"affiliations":[{"raw_affiliation_string":"Medtronic Technology Center,Research, Technology and Clinical,Shanghai,China","institution_ids":["https://openalex.org/I4210120746"]},{"raw_affiliation_string":"Research, Technology and Clinical, Medtronic Technology Center, Shanghai, China","institution_ids":["https://openalex.org/I4210120746"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103046762","display_name":"Steve Lu","orcid":"https://orcid.org/0000-0002-8201-8583"},"institutions":[{"id":"https://openalex.org/I4210120746","display_name":"Medtronic (China)","ror":"https://ror.org/02m7bcm44","country_code":"CN","type":"company","lineage":["https://openalex.org/I4210120746"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Steve Lu","raw_affiliation_strings":["Medtronic Technology Center,Visualization and Robotics,Shanghai,China","Visualization and Robotics, Medtronic Technology Center, Shanghai, China"],"affiliations":[{"raw_affiliation_string":"Medtronic Technology Center,Visualization and Robotics,Shanghai,China","institution_ids":["https://openalex.org/I4210120746"]},{"raw_affiliation_string":"Visualization and Robotics, Medtronic Technology Center, Shanghai, China","institution_ids":["https://openalex.org/I4210120746"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5104095845","display_name":"Xin Tang","orcid":"https://orcid.org/0009-0003-7313-9644"},"institutions":[{"id":"https://openalex.org/I4210120746","display_name":"Medtronic (China)","ror":"https://ror.org/02m7bcm44","country_code":"CN","type":"company","lineage":["https://openalex.org/I4210120746"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xin Tang","raw_affiliation_strings":["Medtronic Technology Center,Research, Technology and Clinical,Shanghai,China","Research, Technology and Clinical, Medtronic Technology Center, Shanghai, China"],"affiliations":[{"raw_affiliation_string":"Medtronic Technology Center,Research, Technology and Clinical,Shanghai,China","institution_ids":["https://openalex.org/I4210120746"]},{"raw_affiliation_string":"Research, Technology and Clinical, Medtronic Technology Center, Shanghai, China","institution_ids":["https://openalex.org/I4210120746"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100404947","display_name":"Jie Yang","orcid":"https://orcid.org/0000-0003-4801-7162"},"institutions":[{"id":"https://openalex.org/I183067930","display_name":"Shanghai Jiao Tong University","ror":"https://ror.org/0220qvk04","country_code":"CN","type":"education","lineage":["https://openalex.org/I183067930"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jie Yang","raw_affiliation_strings":["Shanghai Jiao Tong University,Institute of Image Processing and Pattern Recognition,Shanghai,China","Institute of Image Processing and Pattern Recognition, Shanghai Jiao Tong University, Shanghai, China","Institute of Medical Robotics, Shanghai Jiao Tong University, Shanghai, China"],"affiliations":[{"raw_affiliation_string":"Shanghai Jiao Tong University,Institute of Image Processing and Pattern Recognition,Shanghai,China","institution_ids":["https://openalex.org/I183067930"]},{"raw_affiliation_string":"Institute of Image Processing and Pattern Recognition, Shanghai Jiao Tong University, Shanghai, China","institution_ids":["https://openalex.org/I183067930"]},{"raw_affiliation_string":"Institute of Medical Robotics, Shanghai Jiao Tong University, Shanghai, China","institution_ids":["https://openalex.org/I183067930"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5100683035"],"corresponding_institution_ids":["https://openalex.org/I183067930"],"apc_list":null,"apc_paid":null,"fwci":4.1684,"has_fulltext":false,"cited_by_count":13,"citation_normalized_percentile":{"value":0.95624623,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":96,"max":99},"biblio":{"volume":null,"issue":null,"first_page":"1","last_page":"5"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T14510","display_name":"Medical Imaging and Analysis","score":1.0,"subfield":{"id":"https://openalex.org/subfields/2204","display_name":"Biomedical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T14510","display_name":"Medical Imaging and Analysis","score":1.0,"subfield":{"id":"https://openalex.org/subfields/2204","display_name":"Biomedical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11363","display_name":"Dental Radiography and Imaging","score":0.986299991607666,"subfield":{"id":"https://openalex.org/subfields/3504","display_name":"Oral Surgery"},"field":{"id":"https://openalex.org/fields/35","display_name":"Dentistry"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10776","display_name":"Spinal Fractures and Fixation Techniques","score":0.9839000105857849,"subfield":{"id":"https://openalex.org/subfields/2746","display_name":"Surgery"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/segmentation","display_name":"Segmentation","score":0.7964497804641724},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6898743510246277},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.6374750137329102},{"id":"https://openalex.org/keywords/encoder","display_name":"Encoder","score":0.596135139465332},{"id":"https://openalex.org/keywords/image-segmentation","display_name":"Image segmentation","score":0.5124990940093994},{"id":"https://openalex.org/keywords/transformer","display_name":"Transformer","score":0.48990076780319214},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.4857497811317444},{"id":"https://openalex.org/keywords/computer-vision","display_name":"Computer vision","score":0.4809362292289734},{"id":"https://openalex.org/keywords/vertebra","display_name":"Vertebra","score":0.4703407883644104},{"id":"https://openalex.org/keywords/scale-space-segmentation","display_name":"Scale-space segmentation","score":0.4332008361816406},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.10311999917030334},{"id":"https://openalex.org/keywords/anatomy","display_name":"Anatomy","score":0.10079798102378845},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.08636775612831116}],"concepts":[{"id":"https://openalex.org/C89600930","wikidata":"https://www.wikidata.org/wiki/Q1423946","display_name":"Segmentation","level":2,"score":0.7964497804641724},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6898743510246277},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6374750137329102},{"id":"https://openalex.org/C118505674","wikidata":"https://www.wikidata.org/wiki/Q42586063","display_name":"Encoder","level":2,"score":0.596135139465332},{"id":"https://openalex.org/C124504099","wikidata":"https://www.wikidata.org/wiki/Q56933","display_name":"Image segmentation","level":3,"score":0.5124990940093994},{"id":"https://openalex.org/C66322947","wikidata":"https://www.wikidata.org/wiki/Q11658","display_name":"Transformer","level":3,"score":0.48990076780319214},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.4857497811317444},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.4809362292289734},{"id":"https://openalex.org/C2776412215","wikidata":"https://www.wikidata.org/wiki/Q180323","display_name":"Vertebra","level":2,"score":0.4703407883644104},{"id":"https://openalex.org/C65885262","wikidata":"https://www.wikidata.org/wiki/Q7429708","display_name":"Scale-space segmentation","level":4,"score":0.4332008361816406},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.10311999917030334},{"id":"https://openalex.org/C105702510","wikidata":"https://www.wikidata.org/wiki/Q514","display_name":"Anatomy","level":1,"score":0.10079798102378845},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.08636775612831116},{"id":"https://openalex.org/C165801399","wikidata":"https://www.wikidata.org/wiki/Q25428","display_name":"Voltage","level":2,"score":0.0},{"id":"https://openalex.org/C119599485","wikidata":"https://www.wikidata.org/wiki/Q43035","display_name":"Electrical engineering","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/isbi52829.2022.9761551","is_oa":false,"landing_page_url":"https://doi.org/10.1109/isbi52829.2022.9761551","pdf_url":null,"source":{"id":"https://openalex.org/S4363605129","display_name":"2022 IEEE 19th International Symposium on Biomedical Imaging (ISBI)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"conference"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2022 IEEE 19th International Symposium on Biomedical Imaging (ISBI)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"No poverty","id":"https://metadata.un.org/sdg/1","score":0.7300000190734863}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":21,"referenced_works":["https://openalex.org/W1979064019","https://openalex.org/W2015189457","https://openalex.org/W2067399451","https://openalex.org/W2075358081","https://openalex.org/W2290780092","https://openalex.org/W2464708700","https://openalex.org/W2901559346","https://openalex.org/W2963251401","https://openalex.org/W3011677811","https://openalex.org/W3014974815","https://openalex.org/W3092065674","https://openalex.org/W3092490063","https://openalex.org/W3112346810","https://openalex.org/W3112701542","https://openalex.org/W3127751679","https://openalex.org/W3138516171","https://openalex.org/W3208625279","https://openalex.org/W4385245566","https://openalex.org/W6739901393","https://openalex.org/W6790275670","https://openalex.org/W6802873346"],"related_works":["https://openalex.org/W2185902295","https://openalex.org/W2103507220","https://openalex.org/W3144569342","https://openalex.org/W2945274617","https://openalex.org/W4313052709","https://openalex.org/W4205800335","https://openalex.org/W2055202857","https://openalex.org/W2022929107","https://openalex.org/W80586315","https://openalex.org/W2758994127"],"abstract_inverted_index":{"Multi-label":[0],"vertebrae":[1,52],"segmentation":[2,25,84,88,121],"has":[3],"been":[4],"a":[5,38],"fundamental":[6],"research":[7],"for":[8],"spinal":[9],"image":[10],"analysis":[11],"and":[12,27,45,54,86],"surgical":[13],"intervention.":[14],"However,":[15],"most":[16],"existing":[17],"methods":[18,118],"have":[19],"some":[20],"drawbacks":[21],"including":[22],"poor":[23],"boundary":[24],"results":[26],"identification":[28,105],"of":[29,106,123],"the":[30,96,104,120],"25th":[31],"vertebra.":[32,92],"In":[33],"this":[34,60],"paper,":[35],"we":[36,48],"propose":[37],"single-staged":[39],"network":[40],"based":[41],"on":[42,51,103,119],"vision":[43],"Transformer":[44,65],"UNet.":[46],"Besides,":[47],"exert":[49],"supervision":[50],"Edges":[53],"introduce":[55],"additional":[56],"Global":[57,93],"information":[58,72,94],"to":[59,82],"network,":[61],"called":[62],"EG-Trans3DUNet.":[63],"Specifically,":[64],"encoder":[66],"can":[67,99],"better":[68],"extract":[69],"global":[70],"semantic":[71],"compared":[73],"with":[74],"pure":[75],"UNet":[76],"structure.":[77],"Edge":[78],"detection":[79],"module":[80],"helps":[81],"refine":[83],"boundaries":[85],"keep":[87],"consistency":[89],"in":[90],"each":[91],"from":[95],"whole":[97],"case":[98],"improve":[100],"model":[101,114],"performance":[102],"all":[107],"vertebrae.":[108],"We":[109],"demonstrate":[110],"that":[111],"our":[112],"proposed":[113],"outperforms":[115],"other":[116],"single-stage":[117],"accuracy":[122],"VerSe'20":[124],"datasets.":[125]},"counts_by_year":[{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":7},{"year":2023,"cited_by_count":3}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
