{"id":"https://openalex.org/W4224990358","doi":"https://doi.org/10.1109/isbi52829.2022.9761429","title":"Topology-Aware Learning for Volumetric Cerebrovascular Segmentation","display_name":"Topology-Aware Learning for Volumetric Cerebrovascular Segmentation","publication_year":2022,"publication_date":"2022-03-28","ids":{"openalex":"https://openalex.org/W4224990358","doi":"https://doi.org/10.1109/isbi52829.2022.9761429"},"language":"en","primary_location":{"id":"doi:10.1109/isbi52829.2022.9761429","is_oa":false,"landing_page_url":"https://doi.org/10.1109/isbi52829.2022.9761429","pdf_url":null,"source":{"id":"https://openalex.org/S4363605129","display_name":"2022 IEEE 19th International Symposium on Biomedical Imaging (ISBI)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"conference"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2022 IEEE 19th International Symposium on Biomedical Imaging (ISBI)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"http://urn.kb.se/resolve?urn=urn:nbn:se:uu:diva-482669","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5065690143","display_name":"Subhashis Banerjee","orcid":"https://orcid.org/0000-0002-2358-2096"},"institutions":[{"id":"https://openalex.org/I123387679","display_name":"Uppsala University","ror":"https://ror.org/048a87296","country_code":"SE","type":"education","lineage":["https://openalex.org/I123387679"]}],"countries":["SE"],"is_corresponding":false,"raw_author_name":"Subhashis Banerjee","raw_affiliation_strings":["Uppsala University,Department of Information Technology,Sweden","Department of Information Technology, Uppsala University, Sweden"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Uppsala University,Department of Information Technology,Sweden","institution_ids":["https://openalex.org/I123387679"]},{"raw_affiliation_string":"Department of Information Technology, Uppsala University, Sweden","institution_ids":["https://openalex.org/I123387679"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5085618693","display_name":"Dimitrios Toumpanakis","orcid":"https://orcid.org/0000-0002-5221-2721"},"institutions":[{"id":"https://openalex.org/I123387679","display_name":"Uppsala University","ror":"https://ror.org/048a87296","country_code":"SE","type":"education","lineage":["https://openalex.org/I123387679"]}],"countries":["SE"],"is_corresponding":false,"raw_author_name":"Dimitrios Toumpanakis","raw_affiliation_strings":["Uppsala University,Department of Surgical Sciences, Radiology,Sweden","Department of Surgical Sciences, Radiology, Uppsala University, Sweden"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Uppsala University,Department of Surgical Sciences, Radiology,Sweden","institution_ids":["https://openalex.org/I123387679"]},{"raw_affiliation_string":"Department of Surgical Sciences, Radiology, Uppsala University, Sweden","institution_ids":["https://openalex.org/I123387679"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005409746","display_name":"Ashis Kumar Dhara","orcid":"https://orcid.org/0000-0002-7576-6196"},"institutions":[{"id":"https://openalex.org/I155837530","display_name":"National Institute of Technology Durgapur","ror":"https://ror.org/04ds0jm32","country_code":"IN","type":"education","lineage":["https://openalex.org/I155837530"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Ashis Kumar Dhara","raw_affiliation_strings":["National Institute of Technology Durgapur,Department of Electrical Engineering,India","Department of Electrical Engineering, National Institute of Technology Durgapur, India"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Institute of Technology Durgapur,Department of Electrical Engineering,India","institution_ids":["https://openalex.org/I155837530"]},{"raw_affiliation_string":"Department of Electrical Engineering, National Institute of Technology Durgapur, India","institution_ids":["https://openalex.org/I155837530"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001382014","display_name":"Johan Wikstr\u00f6m","orcid":"https://orcid.org/0000-0002-9481-6857"},"institutions":[{"id":"https://openalex.org/I123387679","display_name":"Uppsala University","ror":"https://ror.org/048a87296","country_code":"SE","type":"education","lineage":["https://openalex.org/I123387679"]}],"countries":["SE"],"is_corresponding":false,"raw_author_name":"Johan Wikstrom","raw_affiliation_strings":["Uppsala University,Department of Surgical Sciences, Radiology,Sweden","Department of Surgical Sciences, Radiology, Uppsala University, Sweden"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Uppsala University,Department of Surgical Sciences, Radiology,Sweden","institution_ids":["https://openalex.org/I123387679"]},{"raw_affiliation_string":"Department of Surgical Sciences, Radiology, Uppsala University, Sweden","institution_ids":["https://openalex.org/I123387679"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5018135860","display_name":"Robin Strand","orcid":"https://orcid.org/0000-0001-7764-1787"},"institutions":[{"id":"https://openalex.org/I123387679","display_name":"Uppsala University","ror":"https://ror.org/048a87296","country_code":"SE","type":"education","lineage":["https://openalex.org/I123387679"]}],"countries":["SE"],"is_corresponding":false,"raw_author_name":"Robin Strand","raw_affiliation_strings":["Uppsala University,Department of Information Technology,Sweden","Department of Information Technology, Uppsala University, Sweden"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Uppsala University,Department of Information Technology,Sweden","institution_ids":["https://openalex.org/I123387679"]},{"raw_affiliation_string":"Department of Information Technology, Uppsala University, Sweden","institution_ids":["https://openalex.org/I123387679"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":1.2387,"has_fulltext":false,"cited_by_count":21,"citation_normalized_percentile":{"value":0.86188786,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":null,"issue":null,"first_page":"1","last_page":"4"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10052","display_name":"Medical Image Segmentation Techniques","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10052","display_name":"Medical Image Segmentation Techniques","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10816","display_name":"Cerebrovascular and Carotid Artery Diseases","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/2740","display_name":"Pulmonary and Respiratory Medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10227","display_name":"Acute Ischemic Stroke Management","score":0.9927999973297119,"subfield":{"id":"https://openalex.org/subfields/2713","display_name":"Epidemiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6984075903892517},{"id":"https://openalex.org/keywords/segmentation","display_name":"Segmentation","score":0.6978160738945007},{"id":"https://openalex.org/keywords/voxel","display_name":"Voxel","score":0.6196457147598267},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.614832878112793},{"id":"https://openalex.org/keywords/deep-learning","display_name":"Deep learning","score":0.6130922436714172},{"id":"https://openalex.org/keywords/regularization","display_name":"Regularization (linguistics)","score":0.5464088916778564},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.5383234024047852},{"id":"https://openalex.org/keywords/encoder","display_name":"Encoder","score":0.47605013847351074},{"id":"https://openalex.org/keywords/topology","display_name":"Topology (electrical circuits)","score":0.4708801209926605},{"id":"https://openalex.org/keywords/autoencoder","display_name":"Autoencoder","score":0.45986294746398926},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.41141337156295776},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.3876258134841919},{"id":"https://openalex.org/keywords/computer-vision","display_name":"Computer vision","score":0.3715883791446686},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.1429687738418579},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.1003330647945404}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6984075903892517},{"id":"https://openalex.org/C89600930","wikidata":"https://www.wikidata.org/wiki/Q1423946","display_name":"Segmentation","level":2,"score":0.6978160738945007},{"id":"https://openalex.org/C54170458","wikidata":"https://www.wikidata.org/wiki/Q663554","display_name":"Voxel","level":2,"score":0.6196457147598267},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.614832878112793},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.6130922436714172},{"id":"https://openalex.org/C2776135515","wikidata":"https://www.wikidata.org/wiki/Q17143721","display_name":"Regularization (linguistics)","level":2,"score":0.5464088916778564},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.5383234024047852},{"id":"https://openalex.org/C118505674","wikidata":"https://www.wikidata.org/wiki/Q42586063","display_name":"Encoder","level":2,"score":0.47605013847351074},{"id":"https://openalex.org/C184720557","wikidata":"https://www.wikidata.org/wiki/Q7825049","display_name":"Topology (electrical circuits)","level":2,"score":0.4708801209926605},{"id":"https://openalex.org/C101738243","wikidata":"https://www.wikidata.org/wiki/Q786435","display_name":"Autoencoder","level":3,"score":0.45986294746398926},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.41141337156295776},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.3876258134841919},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.3715883791446686},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.1429687738418579},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.1003330647945404},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C201995342","wikidata":"https://www.wikidata.org/wiki/Q682496","display_name":"Systems engineering","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1109/isbi52829.2022.9761429","is_oa":false,"landing_page_url":"https://doi.org/10.1109/isbi52829.2022.9761429","pdf_url":null,"source":{"id":"https://openalex.org/S4363605129","display_name":"2022 IEEE 19th International Symposium on Biomedical Imaging (ISBI)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"conference"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2022 IEEE 19th International Symposium on Biomedical Imaging (ISBI)","raw_type":"proceedings-article"},{"id":"pmh:oai:DiVA.org:uu-482669","is_oa":true,"landing_page_url":"http://urn.kb.se/resolve?urn=urn:nbn:se:uu:diva-482669","pdf_url":null,"source":{"id":"https://openalex.org/S4306402042","display_name":"Uppsala University Publications (Uppsala University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I123387679","host_organization_name":"Uppsala University","host_organization_lineage":["https://openalex.org/I123387679"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/conferenceObject"}],"best_oa_location":{"id":"pmh:oai:DiVA.org:uu-482669","is_oa":true,"landing_page_url":"http://urn.kb.se/resolve?urn=urn:nbn:se:uu:diva-482669","pdf_url":null,"source":{"id":"https://openalex.org/S4306402042","display_name":"Uppsala University Publications (Uppsala University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I123387679","host_organization_name":"Uppsala University","host_organization_lineage":["https://openalex.org/I123387679"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/conferenceObject"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320321030","display_name":"VINNOVA","ror":"https://ror.org/01kd5m353"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":16,"referenced_works":["https://openalex.org/W1901129140","https://openalex.org/W2032290571","https://openalex.org/W2464708700","https://openalex.org/W2791117644","https://openalex.org/W2804823968","https://openalex.org/W2902149960","https://openalex.org/W3014974815","https://openalex.org/W3087774993","https://openalex.org/W3090938738","https://openalex.org/W3092226997","https://openalex.org/W3112701542","https://openalex.org/W3112980510","https://openalex.org/W3163526262","https://openalex.org/W6639824700","https://openalex.org/W6752178629","https://openalex.org/W6783544615"],"related_works":["https://openalex.org/W3013693939","https://openalex.org/W2159052453","https://openalex.org/W2566616303","https://openalex.org/W3131327266","https://openalex.org/W2734887215","https://openalex.org/W4297051394","https://openalex.org/W2669956259","https://openalex.org/W4249005693","https://openalex.org/W4392946183","https://openalex.org/W3088732000"],"abstract_inverted_index":{"This":[0,66],"paper":[1],"presents":[2],"a":[3,16,22,103],"topology-aware":[4,23],"learning":[5,47,62],"strategy":[6],"for":[7,26,51],"volumetric":[8],"segmentation":[9,99],"of":[10,57,83],"intracranial":[11],"cerebrovascular":[12],"structures.":[13],"We":[14,87],"propose":[15],"multi-task":[17],"deep":[18,95],"CNN":[19],"along":[20],"with":[21,30,92],"loss":[24],"function":[25],"this":[27,123],"purpose.":[28],"Along":[29],"the":[31,38,48,52,55,58,63,72,81,84,89,115,119],"main":[32,85],"task":[33],"(i.e.":[34],"segmentation),":[35],"we":[36],"train":[37],"model":[39],"to":[40,74,79],"learn":[41,75],"two":[42],"related":[43],"auxiliary":[44],"tasks":[45],"viz.":[46],"distance":[49],"transform":[50],"voxels":[53],"on":[54],"surface":[56],"vascular":[59],"tree":[60],"and":[61,70],"vessel":[64,98],"centerline.":[65],"provides":[67],"additional":[68],"regularization":[69],"allows":[71],"encoder":[73],"higher-level":[76],"intermediate":[77],"representations":[78],"boost":[80],"performance":[82,121],"task.":[86],"compare":[88],"proposed":[90,116],"method":[91,117],"six":[93],"state-of-the-art":[94],"learning-based":[96],"3D":[97],"methods,":[100],"by":[101],"using":[102],"public":[104],"Time-Of-Flight":[105],"Magnetic":[106],"Resonance":[107],"Angiography":[108],"(TOF-MRA)":[109],"dataset.":[110],"Experimental":[111],"results":[112],"demonstrate":[113],"that":[114],"has":[118],"best":[120],"in":[122],"particular":[124],"context.":[125]},"counts_by_year":[{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":7},{"year":2023,"cited_by_count":9},{"year":2022,"cited_by_count":1}],"updated_date":"2026-07-02T09:51:11.867554","created_date":"2025-10-10T00:00:00"}