{"id":"https://openalex.org/W3137211588","doi":"https://doi.org/10.1109/isbi48211.2021.9434130","title":"Exploring Genetic-histologic Relationships in Breast Cancer","display_name":"Exploring Genetic-histologic Relationships in Breast Cancer","publication_year":2021,"publication_date":"2021-04-13","ids":{"openalex":"https://openalex.org/W3137211588","doi":"https://doi.org/10.1109/isbi48211.2021.9434130","mag":"3137211588"},"language":"en","primary_location":{"id":"doi:10.1109/isbi48211.2021.9434130","is_oa":false,"landing_page_url":"https://doi.org/10.1109/isbi48211.2021.9434130","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2021 IEEE 18th International Symposium on Biomedical Imaging (ISBI)","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["arxiv","crossref","datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://arxiv.org/pdf/2103.08082","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5019379985","display_name":"Ruchi Chauhan","orcid":"https://orcid.org/0000-0002-6921-6112"},"institutions":[{"id":"https://openalex.org/I64189192","display_name":"International Institute of Information Technology, Hyderabad","ror":"https://ror.org/05f11g639","country_code":"IN","type":"education","lineage":["https://openalex.org/I64189192"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Ruchi Chauhan","raw_affiliation_strings":["Center for Computational Natural Sciences & Bioinformatics (CCNSB), International Institute of Information Technology, Hyderabad, India","Center for Visual Information Technology (CVIT), International Institute of Information Technology, Hyderabad, India","International Institute of Information Technology,Center for Computational Natural Sciences & Bioinformatics (CCNSB),Hyderabad,India"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Computational Natural Sciences & Bioinformatics (CCNSB), International Institute of Information Technology, Hyderabad, India","institution_ids":["https://openalex.org/I64189192"]},{"raw_affiliation_string":"Center for Visual Information Technology (CVIT), International Institute of Information Technology, Hyderabad, India","institution_ids":["https://openalex.org/I64189192"]},{"raw_affiliation_string":"International Institute of Information Technology,Center for Computational Natural Sciences & Bioinformatics (CCNSB),Hyderabad,India","institution_ids":["https://openalex.org/I64189192"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5113192224","display_name":"PK Vinod","orcid":null},"institutions":[{"id":"https://openalex.org/I64189192","display_name":"International Institute of Information Technology, Hyderabad","ror":"https://ror.org/05f11g639","country_code":"IN","type":"education","lineage":["https://openalex.org/I64189192"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"PK Vinod","raw_affiliation_strings":["Center for Computational Natural Sciences & Bioinformatics (CCNSB), International Institute of Information Technology, Hyderabad, India","International Institute of Information Technology,Center for Computational Natural Sciences & Bioinformatics (CCNSB),Hyderabad,India"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Computational Natural Sciences & Bioinformatics (CCNSB), International Institute of Information Technology, Hyderabad, India","institution_ids":["https://openalex.org/I64189192"]},{"raw_affiliation_string":"International Institute of Information Technology,Center for Computational Natural Sciences & Bioinformatics (CCNSB),Hyderabad,India","institution_ids":["https://openalex.org/I64189192"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5053112307","display_name":"C. V. Jawahar","orcid":"https://orcid.org/0000-0001-6767-7057"},"institutions":[{"id":"https://openalex.org/I64189192","display_name":"International Institute of Information Technology, Hyderabad","ror":"https://ror.org/05f11g639","country_code":"IN","type":"education","lineage":["https://openalex.org/I64189192"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"CV Jawahar","raw_affiliation_strings":["Center for Visual Information Technology (CVIT), International Institute of Information Technology, Hyderabad, India","International Institute of Information Technology,Center for Visual Information Technology (CVIT),Hyderabad,India"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Visual Information Technology (CVIT), International Institute of Information Technology, Hyderabad, India","institution_ids":["https://openalex.org/I64189192"]},{"raw_affiliation_string":"International Institute of Information Technology,Center for Visual Information Technology (CVIT),Hyderabad,India","institution_ids":["https://openalex.org/I64189192"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I64189192"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.02886824,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"1187","last_page":"1190"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10862","display_name":"AI in cancer detection","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10862","display_name":"AI in cancer detection","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.9958999752998352,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12422","display_name":"Radiomics and Machine Learning in Medical Imaging","score":0.9872999787330627,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/digital-pathology","display_name":"Digital pathology","score":0.747774600982666},{"id":"https://openalex.org/keywords/breast-cancer","display_name":"Breast cancer","score":0.6165320873260498},{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.5370767116546631},{"id":"https://openalex.org/keywords/histopathology","display_name":"Histopathology","score":0.5100110769271851},{"id":"https://openalex.org/keywords/cancer","display_name":"Cancer","score":0.433228462934494},{"id":"https://openalex.org/keywords/mutation","display_name":"Mutation","score":0.4293387234210968},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.411907434463501},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.38542798161506653},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.3526379466056824},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3515393137931824},{"id":"https://openalex.org/keywords/pathology","display_name":"Pathology","score":0.3104550838470459},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.27848708629608154},{"id":"https://openalex.org/keywords/internal-medicine","display_name":"Internal medicine","score":0.2149764895439148},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.20147207379341125},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.12103918194770813}],"concepts":[{"id":"https://openalex.org/C2777522853","wikidata":"https://www.wikidata.org/wiki/Q5276128","display_name":"Digital pathology","level":2,"score":0.747774600982666},{"id":"https://openalex.org/C530470458","wikidata":"https://www.wikidata.org/wiki/Q128581","display_name":"Breast cancer","level":3,"score":0.6165320873260498},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.5370767116546631},{"id":"https://openalex.org/C544855455","wikidata":"https://www.wikidata.org/wiki/Q1070952","display_name":"Histopathology","level":2,"score":0.5100110769271851},{"id":"https://openalex.org/C121608353","wikidata":"https://www.wikidata.org/wiki/Q12078","display_name":"Cancer","level":2,"score":0.433228462934494},{"id":"https://openalex.org/C501734568","wikidata":"https://www.wikidata.org/wiki/Q42918","display_name":"Mutation","level":3,"score":0.4293387234210968},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.411907434463501},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.38542798161506653},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.3526379466056824},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3515393137931824},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.3104550838470459},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.27848708629608154},{"id":"https://openalex.org/C126322002","wikidata":"https://www.wikidata.org/wiki/Q11180","display_name":"Internal medicine","level":1,"score":0.2149764895439148},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.20147207379341125},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.12103918194770813},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1109/isbi48211.2021.9434130","is_oa":false,"landing_page_url":"https://doi.org/10.1109/isbi48211.2021.9434130","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2021 IEEE 18th International Symposium on Biomedical Imaging (ISBI)","raw_type":"proceedings-article"},{"id":"pmh:oai:arXiv.org:2103.08082","is_oa":true,"landing_page_url":"http://arxiv.org/abs/2103.08082","pdf_url":"https://arxiv.org/pdf/2103.08082","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":"2331-8422","issn":["2331-8422"],"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":null},{"id":"mag:3137211588","is_oa":true,"landing_page_url":"https://arxiv.org/pdf/2103.08082.pdf","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":"2331-8422","issn":["2331-8422"],"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"arXiv (Cornell University)","raw_type":null},{"id":"doi:10.48550/arxiv.2103.08082","is_oa":true,"landing_page_url":"https://doi.org/10.48550/arxiv.2103.08082","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":"2331-8422","issn":["2331-8422"],"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"Preprint"}],"best_oa_location":{"id":"pmh:oai:arXiv.org:2103.08082","is_oa":true,"landing_page_url":"http://arxiv.org/abs/2103.08082","pdf_url":"https://arxiv.org/pdf/2103.08082","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":"2331-8422","issn":["2331-8422"],"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":null},"sustainable_development_goals":[{"score":0.41999998688697815,"id":"https://metadata.un.org/sdg/3","display_name":"Good health and well-being"}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3137211588.pdf","grobid_xml":"https://content.openalex.org/works/W3137211588.grobid-xml"},"referenced_works_count":25,"referenced_works":["https://openalex.org/W1881540319","https://openalex.org/W2057559260","https://openalex.org/W2305684009","https://openalex.org/W2343160907","https://openalex.org/W2504220184","https://openalex.org/W2521492299","https://openalex.org/W2527179423","https://openalex.org/W2547092276","https://openalex.org/W2760946358","https://openalex.org/W2771248105","https://openalex.org/W2889089723","https://openalex.org/W2913272695","https://openalex.org/W2964212410","https://openalex.org/W2969278648","https://openalex.org/W2974860472","https://openalex.org/W2998794254","https://openalex.org/W3008355217","https://openalex.org/W3021500318","https://openalex.org/W3036465927","https://openalex.org/W3044996171","https://openalex.org/W3100844720","https://openalex.org/W6739651123","https://openalex.org/W6759438073","https://openalex.org/W6780162762","https://openalex.org/W6785062919"],"related_works":["https://openalex.org/W3164357013","https://openalex.org/W3007406909","https://openalex.org/W1987896487","https://openalex.org/W2888289165","https://openalex.org/W1988881529","https://openalex.org/W2032943026","https://openalex.org/W2143878386","https://openalex.org/W1939857661","https://openalex.org/W2315327149","https://openalex.org/W3192046896","https://openalex.org/W2317011968","https://openalex.org/W2600144413","https://openalex.org/W3102736763","https://openalex.org/W2038492487","https://openalex.org/W2912872638","https://openalex.org/W2987444072","https://openalex.org/W161672357","https://openalex.org/W2168517816","https://openalex.org/W1819729812","https://openalex.org/W2007518984"],"abstract_inverted_index":{"The":[0],"advent":[1],"of":[2,102,107,129],"digital":[3],"pathology":[4],"presents":[5],"opportunities":[6],"for":[7,10,16,123],"computer":[8],"vision":[9],"fast,":[11],"accurate,":[12],"and":[13,19,43,89,104,131],"objective":[14],"solutions":[15],"histopathological":[17],"images":[18,83],"aid":[20],"in":[21,66,86],"knowledge":[22],"discovery.":[23],"This":[24],"work":[25],"uses":[26],"deep":[27],"learning":[28],"to":[29,54,60,141],"predict":[30],"genomic":[31,63],"biomarkers-":[32],"TP53":[33],"mutation,":[34,36],"PlK3CA":[35],"ER":[37],"status,":[38,40,42],"PR":[39],"HER2":[41],"intrinsic":[44],"subtypes,":[45],"from":[46,82],"breast":[47],"cancer":[48,146],"histopathology":[49],"images.":[50,67],"Furthermore,":[51],"we":[52],"attempt":[53],"understand":[55],"the":[56,95,127],"underlying":[57],"morphology":[58],"as":[59,121],"how":[61],"these":[62,80],"biomarkers":[64,81],"manifest":[65],"Since":[68],"gene":[69],"sequencing":[70],"is":[71],"expensive,":[72],"not":[73],"always":[74],"available,":[75],"or":[76],"even":[77],"feasible,":[78],"predicting":[79],"would":[84],"help":[85],"diagnosis,":[87],"prognosis,":[88],"effective":[90],"treatment":[91],"planning.":[92],"We":[93,114],"outperform":[94],"existing":[96],"works":[97],"with":[98],"a":[99,105],"minimum":[100],"improvement":[101],"0.02":[103],"maximum":[106],"0.13":[108],"AUROC":[109],"scores":[110],"across":[111,144],"all":[112],"tasks.":[113],"also":[115],"gain":[116],"insights":[117],"that":[118],"can":[119,138],"serve":[120],"hypotheses":[122],"further":[124],"experimentations,":[125],"including":[126],"presence":[128],"lymphocytes":[130],"karyorrhexis.":[132],"Moreover,":[133],"our":[134],"fully":[135],"automated":[136],"workflow":[137],"be":[139],"extended":[140],"other":[142,145],"tasks":[143],"subtypes.":[147]},"counts_by_year":[],"updated_date":"2026-07-29T14:22:42.915294","created_date":"2025-10-10T00:00:00"}
