{"id":"https://openalex.org/W3027368152","doi":"https://doi.org/10.1109/isbi45749.2020.9098466","title":"Software Tool to Read, Represent, Manipulate, and Apply N-Dimensional Spatial Transforms","display_name":"Software Tool to Read, Represent, Manipulate, and Apply N-Dimensional Spatial Transforms","publication_year":2020,"publication_date":"2020-04-01","ids":{"openalex":"https://openalex.org/W3027368152","doi":"https://doi.org/10.1109/isbi45749.2020.9098466","mag":"3027368152"},"language":"en","primary_location":{"id":"doi:10.1109/isbi45749.2020.9098466","is_oa":false,"landing_page_url":"https://doi.org/10.1109/isbi45749.2020.9098466","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2020 IEEE 17th International Symposium on Biomedical Imaging (ISBI)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5019878487","display_name":"Oscar Est\u00e9ban","orcid":"https://orcid.org/0000-0001-8435-6191"},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"O. Esteban","raw_affiliation_strings":["Stanford University"],"affiliations":[{"raw_affiliation_string":"Stanford University","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041859996","display_name":"Mathias Goncalves","orcid":"https://orcid.org/0000-0002-7252-7771"},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"M. Goncalves","raw_affiliation_strings":["Stanford University"],"affiliations":[{"raw_affiliation_string":"Stanford University","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005898599","display_name":"Christopher J. Markiewicz","orcid":"https://orcid.org/0000-0002-6533-164X"},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"C. J. Markiewicz","raw_affiliation_strings":["Stanford University"],"affiliations":[{"raw_affiliation_string":"Stanford University","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051194003","display_name":"Satrajit Ghosh","orcid":"https://orcid.org/0000-0002-5312-6729"},"institutions":[{"id":"https://openalex.org/I144112489","display_name":"McGovern Institute for Brain Research","ror":"https://ror.org/05ymca674","country_code":"US","type":"facility","lineage":["https://openalex.org/I144112489","https://openalex.org/I63966007"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"S. S. Ghosh","raw_affiliation_strings":["McGovern Institute for Brain Research, Harvard Medical School"],"affiliations":[{"raw_affiliation_string":"McGovern Institute for Brain Research, Harvard Medical School","institution_ids":["https://openalex.org/I144112489"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5046868253","display_name":"Russell A. Poldrack","orcid":"https://orcid.org/0000-0001-6755-0259"},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"R. A. Poldrack","raw_affiliation_strings":["Stanford University"],"affiliations":[{"raw_affiliation_string":"Stanford University","institution_ids":["https://openalex.org/I97018004"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5019878487"],"corresponding_institution_ids":["https://openalex.org/I97018004"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.05063442,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":95},"biblio":{"volume":null,"issue":null,"first_page":"709","last_page":"712"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10241","display_name":"Functional Brain Connectivity Studies","score":0.9979000091552734,"subfield":{"id":"https://openalex.org/subfields/2805","display_name":"Cognitive Neuroscience"},"field":{"id":"https://openalex.org/fields/28","display_name":"Neuroscience"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10241","display_name":"Functional Brain Connectivity Studies","score":0.9979000091552734,"subfield":{"id":"https://openalex.org/subfields/2805","display_name":"Cognitive Neuroscience"},"field":{"id":"https://openalex.org/fields/28","display_name":"Neuroscience"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10378","display_name":"Advanced MRI Techniques and Applications","score":0.9959999918937683,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10052","display_name":"Medical Image Segmentation Techniques","score":0.9943000078201294,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8051287531852722},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.6828505396842957},{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.6376165151596069},{"id":"https://openalex.org/keywords/image-registration","display_name":"Image registration","score":0.5905647873878479},{"id":"https://openalex.org/keywords/image-processing","display_name":"Image processing","score":0.5262869000434875},{"id":"https://openalex.org/keywords/compatibility","display_name":"Compatibility (geochemistry)","score":0.43685734272003174},{"id":"https://openalex.org/keywords/processing","display_name":"Processing","score":0.41534945368766785},{"id":"https://openalex.org/keywords/file-format","display_name":"File format","score":0.411062628030777},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.38386279344558716},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.36026349663734436},{"id":"https://openalex.org/keywords/computer-vision","display_name":"Computer vision","score":0.35692065954208374},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.3387565314769745},{"id":"https://openalex.org/keywords/image","display_name":"Image (mathematics)","score":0.24104911088943481},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.14957842230796814},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.14316055178642273}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8051287531852722},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.6828505396842957},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.6376165151596069},{"id":"https://openalex.org/C166704113","wikidata":"https://www.wikidata.org/wiki/Q861092","display_name":"Image registration","level":3,"score":0.5905647873878479},{"id":"https://openalex.org/C9417928","wikidata":"https://www.wikidata.org/wiki/Q1070689","display_name":"Image processing","level":3,"score":0.5262869000434875},{"id":"https://openalex.org/C2778648169","wikidata":"https://www.wikidata.org/wiki/Q967768","display_name":"Compatibility (geochemistry)","level":2,"score":0.43685734272003174},{"id":"https://openalex.org/C194241460","wikidata":"https://www.wikidata.org/wiki/Q1053535","display_name":"Processing","level":3,"score":0.41534945368766785},{"id":"https://openalex.org/C97250363","wikidata":"https://www.wikidata.org/wiki/Q235557","display_name":"File format","level":2,"score":0.411062628030777},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.38386279344558716},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.36026349663734436},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.35692065954208374},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.3387565314769745},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.24104911088943481},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.14957842230796814},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.14316055178642273},{"id":"https://openalex.org/C127313418","wikidata":"https://www.wikidata.org/wiki/Q1069","display_name":"Geology","level":0,"score":0.0},{"id":"https://openalex.org/C17409809","wikidata":"https://www.wikidata.org/wiki/Q161764","display_name":"Geochemistry","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/isbi45749.2020.9098466","is_oa":false,"landing_page_url":"https://doi.org/10.1109/isbi45749.2020.9098466","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2020 IEEE 17th International Symposium on Biomedical Imaging (ISBI)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":7,"referenced_works":["https://openalex.org/W1970928383","https://openalex.org/W2090687144","https://openalex.org/W2951103577","https://openalex.org/W2951583631","https://openalex.org/W2977883299","https://openalex.org/W4241074797","https://openalex.org/W6802650984"],"related_works":["https://openalex.org/W2390255551","https://openalex.org/W2367511445","https://openalex.org/W1981780420","https://openalex.org/W2182707996","https://openalex.org/W2381930792","https://openalex.org/W45233828","https://openalex.org/W2964988449","https://openalex.org/W2358901819","https://openalex.org/W2397952901","https://openalex.org/W2029380707"],"abstract_inverted_index":{"Spatial":[0],"transforms":[1,99],"formalize":[2],"mappings":[3],"between":[4,24,76,92,141],"coordinates":[5],"of":[6,16,45,48,57,71,82,90,155,163],"objects":[7],"in":[8,34,54],"biomedical":[9],"images.":[10,26],"Transforms":[11],"typically":[12],"are":[13],"the":[14,22,74,80,102,126,136,153,159],"outcome":[15],"image":[17,38,49,165],"registration":[18,28,50],"methodologies,":[19],"which":[20],"estimate":[21],"alignment":[23],"two":[25],"Image":[27],"is":[29,118,147],"a":[30,55,86,148],"prominent":[31],"task":[32],"present":[33],"nearly":[35],"all":[36],"standard":[37],"processing":[39,166],"and":[40,60,66,78,94,107,113,144,157,161,167],"analysis":[41,168],"pipelines.":[42],"The":[43,115],"proliferation":[44],"software":[46,87,117,142],"implementations":[47],"methodologies":[51],"has":[52],"resulted":[53],"spread":[56],"data":[58],"structures":[59],"file":[61],"formats":[62,72,93,146],"used":[63],"to":[64,97,120,124,135,151],"preserve":[65],"communicate":[67],"transforms.":[68],"This":[69],"segregation":[70],"hinders":[73],"compatibility":[75,127],"tools":[77,143],"endangers":[79],"reproducibility":[81,154],"results.":[83],"We":[84],"propose":[85],"tool":[88,131],"capable":[89],"converting":[91],"resampling":[95],"images":[96],"apply":[98],"generated":[100],"by":[101],"most":[103],"popular":[104],"neuroimaging":[105],"packages":[106],"libraries":[108],"(AFNI,":[109],"FSL,":[110],"FreeSurfer,":[111],"ITK,":[112],"SPM).":[114],"proposed":[116],"subject":[119],"continuous":[121],"integration":[122],"tests":[123],"check":[125],"with":[128],"each":[129],"supported":[130],"after":[132],"every":[133],"change":[134],"code":[137],"base":[138],"(https://github.com/poldracklab/nitransforms).":[139],"Compatibility":[140],"imaging":[145],"necessary":[149],"bridge":[150],"ensure":[152],"results":[156],"enable":[158],"optimization":[160],"evaluation":[162],"current":[164],"workflows.":[169]},"counts_by_year":[{"year":2025,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}