{"id":"https://openalex.org/W2981052435","doi":"https://doi.org/10.1109/isbi45749.2020.9098359","title":"In Silico Prediction of Cell Traction Forces","display_name":"In Silico Prediction of Cell Traction Forces","publication_year":2020,"publication_date":"2020-04-01","ids":{"openalex":"https://openalex.org/W2981052435","doi":"https://doi.org/10.1109/isbi45749.2020.9098359","mag":"2981052435"},"language":"en","primary_location":{"id":"doi:10.1109/isbi45749.2020.9098359","is_oa":false,"landing_page_url":"https://doi.org/10.1109/isbi45749.2020.9098359","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2020 IEEE 17th International Symposium on Biomedical Imaging (ISBI)","raw_type":"proceedings-article"},"type":"preprint","indexed_in":["arxiv","crossref","datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://arxiv.org/pdf/1910.07380","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5024671239","display_name":"Nicolas Pielawski","orcid":"https://orcid.org/0000-0001-8182-0091"},"institutions":[{"id":"https://openalex.org/I123387679","display_name":"Uppsala University","ror":"https://ror.org/048a87296","country_code":"SE","type":"education","lineage":["https://openalex.org/I123387679"]}],"countries":["SE"],"is_corresponding":true,"raw_author_name":"Nicolas Pielawski","raw_affiliation_strings":["Uppsala University, Uppsala","Uppsala University,Dept. of Information Technology,Uppsala,752 37"],"affiliations":[{"raw_affiliation_string":"Uppsala University, Uppsala","institution_ids":["https://openalex.org/I123387679"]},{"raw_affiliation_string":"Uppsala University,Dept. of Information Technology,Uppsala,752 37","institution_ids":["https://openalex.org/I123387679"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020280480","display_name":"Jianjiang Hu","orcid":"https://orcid.org/0000-0001-5382-591X"},"institutions":[{"id":"https://openalex.org/I28166907","display_name":"Karolinska Institutet","ror":"https://ror.org/056d84691","country_code":"SE","type":"education","lineage":["https://openalex.org/I28166907"]}],"countries":["SE"],"is_corresponding":false,"raw_author_name":"Jianjiang Hu","raw_affiliation_strings":["Karolinska Institutet, Huddinge","Karolinska Institutet,Department of Biosciences and Nutrition,Huddinge,141 57"],"affiliations":[{"raw_affiliation_string":"Karolinska Institutet, Huddinge","institution_ids":["https://openalex.org/I28166907"]},{"raw_affiliation_string":"Karolinska Institutet,Department of Biosciences and Nutrition,Huddinge,141 57","institution_ids":["https://openalex.org/I28166907"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012387028","display_name":"Staffan Str\u00f6mblad","orcid":"https://orcid.org/0000-0002-1236-6339"},"institutions":[{"id":"https://openalex.org/I28166907","display_name":"Karolinska Institutet","ror":"https://ror.org/056d84691","country_code":"SE","type":"education","lineage":["https://openalex.org/I28166907"]}],"countries":["SE"],"is_corresponding":false,"raw_author_name":"Staffan Stromblad","raw_affiliation_strings":["Karolinska Institutet, Huddinge","Karolinska Institutet,Department of Biosciences and Nutrition,Huddinge,141 57"],"affiliations":[{"raw_affiliation_string":"Karolinska Institutet, Huddinge","institution_ids":["https://openalex.org/I28166907"]},{"raw_affiliation_string":"Karolinska Institutet,Department of Biosciences and Nutrition,Huddinge,141 57","institution_ids":["https://openalex.org/I28166907"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5028372092","display_name":"Carolina W\u00e4hlby","orcid":"https://orcid.org/0000-0002-4139-7003"},"institutions":[{"id":"https://openalex.org/I123387679","display_name":"Uppsala University","ror":"https://ror.org/048a87296","country_code":"SE","type":"education","lineage":["https://openalex.org/I123387679"]}],"countries":["SE"],"is_corresponding":false,"raw_author_name":"Carolina Wahlby","raw_affiliation_strings":["Uppsala University, Uppsala","Uppsala University,Dept. of Information Technology,Uppsala,752 37"],"affiliations":[{"raw_affiliation_string":"Uppsala University, Uppsala","institution_ids":["https://openalex.org/I123387679"]},{"raw_affiliation_string":"Uppsala University,Dept. of Information Technology,Uppsala,752 37","institution_ids":["https://openalex.org/I123387679"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5024671239"],"corresponding_institution_ids":["https://openalex.org/I123387679"],"apc_list":null,"apc_paid":null,"fwci":0.1109,"has_fulltext":true,"cited_by_count":2,"citation_normalized_percentile":{"value":0.40598532,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":null,"issue":null,"first_page":"877","last_page":"881"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10379","display_name":"Cellular Mechanics and Interactions","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/1307","display_name":"Cell Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10379","display_name":"Cellular Mechanics and Interactions","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/1307","display_name":"Cell Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10923","display_name":"Force Microscopy Techniques and Applications","score":0.9904999732971191,"subfield":{"id":"https://openalex.org/subfields/3107","display_name":"Atomic and Molecular Physics, and Optics"},"field":{"id":"https://openalex.org/fields/31","display_name":"Physics and Astronomy"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9779000282287598,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/traction","display_name":"Traction (geology)","score":0.7503248453140259},{"id":"https://openalex.org/keywords/biological-system","display_name":"Biological system","score":0.5621528029441833},{"id":"https://openalex.org/keywords/displacement","display_name":"Displacement (psychology)","score":0.5491499900817871},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5411978363990784},{"id":"https://openalex.org/keywords/tractive-force","display_name":"Tractive force","score":0.506239116191864},{"id":"https://openalex.org/keywords/artificial-neural-network","display_name":"Artificial neural network","score":0.48832985758781433},{"id":"https://openalex.org/keywords/pixel","display_name":"Pixel","score":0.460157185792923},{"id":"https://openalex.org/keywords/fluorescence-microscope","display_name":"Fluorescence microscope","score":0.45490771532058716},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4407731890678406},{"id":"https://openalex.org/keywords/code","display_name":"Code (set theory)","score":0.42410776019096375},{"id":"https://openalex.org/keywords/trustworthiness","display_name":"Trustworthiness","score":0.4240381121635437},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.36113590002059937},{"id":"https://openalex.org/keywords/mechanics","display_name":"Mechanics","score":0.3353400230407715},{"id":"https://openalex.org/keywords/fluorescence","display_name":"Fluorescence","score":0.33337095379829407},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.24873784184455872},{"id":"https://openalex.org/keywords/structural-engineering","display_name":"Structural engineering","score":0.23037469387054443},{"id":"https://openalex.org/keywords/mechanical-engineering","display_name":"Mechanical engineering","score":0.18819105625152588},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.1816883385181427},{"id":"https://openalex.org/keywords/optics","display_name":"Optics","score":0.1620798408985138},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.13587933778762817}],"concepts":[{"id":"https://openalex.org/C38834483","wikidata":"https://www.wikidata.org/wiki/Q17000223","display_name":"Traction (geology)","level":2,"score":0.7503248453140259},{"id":"https://openalex.org/C186060115","wikidata":"https://www.wikidata.org/wiki/Q30336093","display_name":"Biological system","level":1,"score":0.5621528029441833},{"id":"https://openalex.org/C107551265","wikidata":"https://www.wikidata.org/wiki/Q1458245","display_name":"Displacement (psychology)","level":2,"score":0.5491499900817871},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5411978363990784},{"id":"https://openalex.org/C32520587","wikidata":"https://www.wikidata.org/wiki/Q2142522","display_name":"Tractive force","level":2,"score":0.506239116191864},{"id":"https://openalex.org/C50644808","wikidata":"https://www.wikidata.org/wiki/Q192776","display_name":"Artificial neural network","level":2,"score":0.48832985758781433},{"id":"https://openalex.org/C160633673","wikidata":"https://www.wikidata.org/wiki/Q355198","display_name":"Pixel","level":2,"score":0.460157185792923},{"id":"https://openalex.org/C169274487","wikidata":"https://www.wikidata.org/wiki/Q840211","display_name":"Fluorescence microscope","level":3,"score":0.45490771532058716},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4407731890678406},{"id":"https://openalex.org/C2776760102","wikidata":"https://www.wikidata.org/wiki/Q5139990","display_name":"Code (set theory)","level":3,"score":0.42410776019096375},{"id":"https://openalex.org/C153701036","wikidata":"https://www.wikidata.org/wiki/Q659974","display_name":"Trustworthiness","level":2,"score":0.4240381121635437},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.36113590002059937},{"id":"https://openalex.org/C57879066","wikidata":"https://www.wikidata.org/wiki/Q41217","display_name":"Mechanics","level":1,"score":0.3353400230407715},{"id":"https://openalex.org/C91881484","wikidata":"https://www.wikidata.org/wiki/Q191807","display_name":"Fluorescence","level":2,"score":0.33337095379829407},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.24873784184455872},{"id":"https://openalex.org/C66938386","wikidata":"https://www.wikidata.org/wiki/Q633538","display_name":"Structural engineering","level":1,"score":0.23037469387054443},{"id":"https://openalex.org/C78519656","wikidata":"https://www.wikidata.org/wiki/Q101333","display_name":"Mechanical engineering","level":1,"score":0.18819105625152588},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.1816883385181427},{"id":"https://openalex.org/C120665830","wikidata":"https://www.wikidata.org/wiki/Q14620","display_name":"Optics","level":1,"score":0.1620798408985138},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.13587933778762817},{"id":"https://openalex.org/C15744967","wikidata":"https://www.wikidata.org/wiki/Q9418","display_name":"Psychology","level":0,"score":0.0},{"id":"https://openalex.org/C542102704","wikidata":"https://www.wikidata.org/wiki/Q183257","display_name":"Psychotherapist","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C38652104","wikidata":"https://www.wikidata.org/wiki/Q3510521","display_name":"Computer security","level":1,"score":0.0},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.0}],"mesh":[],"locations_count":5,"locations":[{"id":"doi:10.1109/isbi45749.2020.9098359","is_oa":false,"landing_page_url":"https://doi.org/10.1109/isbi45749.2020.9098359","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2020 IEEE 17th International Symposium on Biomedical Imaging (ISBI)","raw_type":"proceedings-article"},{"id":"pmh:oai:arXiv.org:1910.07380","is_oa":true,"landing_page_url":"http://arxiv.org/abs/1910.07380","pdf_url":"https://arxiv.org/pdf/1910.07380","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"text"},{"id":"mag:2981052435","is_oa":true,"landing_page_url":"http://arxiv.org/pdf/1910.07380.pdf","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"arXiv (Cornell University)","raw_type":null},{"id":"doi:10.48550/arxiv.1910.07380","is_oa":true,"landing_page_url":"https://doi.org/10.48550/arxiv.1910.07380","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article"},{"id":"doi:10.17023/1e4e-xm97","is_oa":true,"landing_page_url":"https://doi.org/10.17023/1e4e-xm97","pdf_url":null,"source":{"id":"https://openalex.org/S7407051697","display_name":"IEEE RESOURCE CENTERS","issn_l":null,"issn":[],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article"}],"best_oa_location":{"id":"pmh:oai:arXiv.org:1910.07380","is_oa":true,"landing_page_url":"http://arxiv.org/abs/1910.07380","pdf_url":"https://arxiv.org/pdf/1910.07380","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"text"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2981052435.pdf","grobid_xml":"https://content.openalex.org/works/W2981052435.grobid-xml"},"referenced_works_count":17,"referenced_works":["https://openalex.org/W1774737416","https://openalex.org/W1901129140","https://openalex.org/W1976776884","https://openalex.org/W1979985652","https://openalex.org/W1985617348","https://openalex.org/W2111412288","https://openalex.org/W2111460811","https://openalex.org/W2115205179","https://openalex.org/W2169242829","https://openalex.org/W2559597482","https://openalex.org/W2600383743","https://openalex.org/W2963446712","https://openalex.org/W2971561076","https://openalex.org/W4393695278","https://openalex.org/W6639824700","https://openalex.org/W6735443497","https://openalex.org/W6754361798"],"related_works":["https://openalex.org/W3027397472","https://openalex.org/W22860241","https://openalex.org/W2141134103","https://openalex.org/W3113133590","https://openalex.org/W3197387302","https://openalex.org/W2135165925","https://openalex.org/W2085155987","https://openalex.org/W2193731171","https://openalex.org/W1993008821","https://openalex.org/W3091259544","https://openalex.org/W2346473394","https://openalex.org/W2742975838","https://openalex.org/W2321095978","https://openalex.org/W2891646485","https://openalex.org/W3006534030"],"abstract_inverted_index":{"Traction":[0],"Force":[1],"Microscopy":[2],"(TFM)":[3],"is":[4,97,127],"a":[5,13,38,47,59],"technique":[6],"used":[7],"to":[8,17,42],"determine":[9],"the":[10,18,52,68,79,95,102,120,124],"tensions":[11],"that":[12,72],"biological":[14],"cell":[15],"conveys":[16],"underlying":[19],"surface.":[20],"Typically,":[21],"TFM":[22],"requires":[23],"culturing":[24],"cells":[25,77],"on":[26,75],"gels":[27],"with":[28,88],"fluorescent":[29,49,121],"beads,":[30],"followed":[31],"by":[32],"bead":[33,112],"displacement":[34],"calculations.":[35],"We":[36],"present":[37],"new":[39],"method":[40,104],"allowing":[41],"predict":[43],"those":[44],"forces":[45,69,84,108],"from":[46],"regular":[48],"image":[50],"of":[51,67,78,119,123],"cell.":[53],"Using":[54,101],"Deep":[55],"Learning,":[56],"we":[57],"trained":[58],"Bayesian":[60],"Neural":[61],"Network":[62],"adapted":[63],"for":[64],"pixel":[65],"regression":[66],"and":[70,114],"show":[71],"it":[73],"generalises":[74],"different":[76],"same":[80],"strain.":[81],"The":[82],"predicted":[83],"are":[85],"computed":[86],"along":[87],"an":[89],"approximated":[90],"uncertainty,":[91],"which":[92],"shows":[93],"whether":[94],"prediction":[96],"trustworthy":[98],"or":[99],"not.":[100],"proposed":[103],"could":[105],"help":[106],"estimating":[107],"when":[109],"calculating":[110],"non-trivial":[111],"displacements":[113],"can":[115],"also":[116],"free":[117],"one":[118],"channels":[122],"microscope.":[125],"Code":[126],"available":[128],"at":[129],"https://github.com/wahlby-lab/InSilicoTFM.":[130]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2021,"cited_by_count":1}],"updated_date":"2026-03-10T16:38:18.471706","created_date":"2025-10-10T00:00:00"}
