{"id":"https://openalex.org/W2959827761","doi":"https://doi.org/10.1109/isbi.2019.8759500","title":"Facilitating Manual Segmentation of 3D Datasets Using Contour And Intensity Guided Interpolation","display_name":"Facilitating Manual Segmentation of 3D Datasets Using Contour And Intensity Guided Interpolation","publication_year":2019,"publication_date":"2019-04-01","ids":{"openalex":"https://openalex.org/W2959827761","doi":"https://doi.org/10.1109/isbi.2019.8759500","mag":"2959827761"},"language":"en","primary_location":{"id":"doi:10.1109/isbi.2019.8759500","is_oa":false,"landing_page_url":"https://doi.org/10.1109/isbi.2019.8759500","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2019 IEEE 16th International Symposium on Biomedical Imaging (ISBI 2019)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101410234","display_name":"Sadhana Ravikumar","orcid":"https://orcid.org/0000-0002-9858-4731"},"institutions":[{"id":"https://openalex.org/I4210127693","display_name":"Penn Center for AIDS Research","ror":"https://ror.org/047939x15","country_code":"US","type":"facility","lineage":["https://openalex.org/I102322052","https://openalex.org/I1335321130","https://openalex.org/I4210127693","https://openalex.org/I79576946"]},{"id":"https://openalex.org/I79576946","display_name":"University of Pennsylvania","ror":"https://ror.org/00b30xv10","country_code":"US","type":"education","lineage":["https://openalex.org/I79576946"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Sadhana Ravikumar","raw_affiliation_strings":["Penn Image Computing and Science Laboratory, University of Pennsylvania, Philadelphia, PA, USA"],"affiliations":[{"raw_affiliation_string":"Penn Image Computing and Science Laboratory, University of Pennsylvania, Philadelphia, PA, USA","institution_ids":["https://openalex.org/I4210127693","https://openalex.org/I79576946"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5057342287","display_name":"Laura E.M. Wisse","orcid":"https://orcid.org/0000-0001-7504-3943"},"institutions":[{"id":"https://openalex.org/I4210127693","display_name":"Penn Center for AIDS Research","ror":"https://ror.org/047939x15","country_code":"US","type":"facility","lineage":["https://openalex.org/I102322052","https://openalex.org/I1335321130","https://openalex.org/I4210127693","https://openalex.org/I79576946"]},{"id":"https://openalex.org/I79576946","display_name":"University of Pennsylvania","ror":"https://ror.org/00b30xv10","country_code":"US","type":"education","lineage":["https://openalex.org/I79576946"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Laura Wisse","raw_affiliation_strings":["Penn Image Computing and Science Laboratory, University of Pennsylvania, Philadelphia, PA, USA"],"affiliations":[{"raw_affiliation_string":"Penn Image Computing and Science Laboratory, University of Pennsylvania, Philadelphia, PA, USA","institution_ids":["https://openalex.org/I4210127693","https://openalex.org/I79576946"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074250521","display_name":"Yang Gao","orcid":"https://orcid.org/0000-0002-2488-1813"},"institutions":[{"id":"https://openalex.org/I223532165","display_name":"University of Utah","ror":"https://ror.org/03r0ha626","country_code":"US","type":"education","lineage":["https://openalex.org/I223532165"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yang Gao","raw_affiliation_strings":["Department of Computer Science, University of Utah, Salt Lake City, UT, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Utah, Salt Lake City, UT, USA","institution_ids":["https://openalex.org/I223532165"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010769610","display_name":"Guido Gerig","orcid":"https://orcid.org/0000-0002-9547-6233"},"institutions":[{"id":"https://openalex.org/I57206974","display_name":"New York University","ror":"https://ror.org/0190ak572","country_code":"US","type":"education","lineage":["https://openalex.org/I57206974"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Guido Gerig","raw_affiliation_strings":["Department of Computer Science and Engineering, NYU Tandon School of Engineering, New York, NY, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, NYU Tandon School of Engineering, New York, NY, USA","institution_ids":["https://openalex.org/I57206974"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5059550368","display_name":"Paul A. Yushkevich","orcid":"https://orcid.org/0000-0001-8543-4016"},"institutions":[{"id":"https://openalex.org/I79576946","display_name":"University of Pennsylvania","ror":"https://ror.org/00b30xv10","country_code":"US","type":"education","lineage":["https://openalex.org/I79576946"]},{"id":"https://openalex.org/I4210127693","display_name":"Penn Center for AIDS Research","ror":"https://ror.org/047939x15","country_code":"US","type":"facility","lineage":["https://openalex.org/I102322052","https://openalex.org/I1335321130","https://openalex.org/I4210127693","https://openalex.org/I79576946"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Paul Yushkevich","raw_affiliation_strings":["Penn Image Computing and Science Laboratory, University of Pennsylvania, Philadelphia, PA, USA"],"affiliations":[{"raw_affiliation_string":"Penn Image Computing and Science Laboratory, University of Pennsylvania, Philadelphia, PA, USA","institution_ids":["https://openalex.org/I4210127693","https://openalex.org/I79576946"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5101410234"],"corresponding_institution_ids":["https://openalex.org/I4210127693","https://openalex.org/I79576946"],"apc_list":null,"apc_paid":null,"fwci":0.5061,"has_fulltext":false,"cited_by_count":7,"citation_normalized_percentile":{"value":0.68798019,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10052","display_name":"Medical Image Segmentation Techniques","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10052","display_name":"Medical Image Segmentation Techniques","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12549","display_name":"Image and Object Detection Techniques","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10627","display_name":"Advanced Image and Video Retrieval Techniques","score":0.9965999722480774,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/interpolation","display_name":"Interpolation (computer graphics)","score":0.8233436346054077},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6990702748298645},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.6925449371337891},{"id":"https://openalex.org/keywords/segmentation","display_name":"Segmentation","score":0.6772201657295227},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.583362340927124},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.5315119028091431},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.5165068507194519},{"id":"https://openalex.org/keywords/computer-vision","display_name":"Computer vision","score":0.5019149780273438},{"id":"https://openalex.org/keywords/image-segmentation","display_name":"Image segmentation","score":0.45308437943458557},{"id":"https://openalex.org/keywords/image","display_name":"Image (mathematics)","score":0.16467314958572388},{"id":"https://openalex.org/keywords/geology","display_name":"Geology","score":0.08922988176345825}],"concepts":[{"id":"https://openalex.org/C137800194","wikidata":"https://www.wikidata.org/wiki/Q11713455","display_name":"Interpolation (computer graphics)","level":3,"score":0.8233436346054077},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6990702748298645},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6925449371337891},{"id":"https://openalex.org/C89600930","wikidata":"https://www.wikidata.org/wiki/Q1423946","display_name":"Segmentation","level":2,"score":0.6772201657295227},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.583362340927124},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.5315119028091431},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.5165068507194519},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.5019149780273438},{"id":"https://openalex.org/C124504099","wikidata":"https://www.wikidata.org/wiki/Q56933","display_name":"Image segmentation","level":3,"score":0.45308437943458557},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.16467314958572388},{"id":"https://openalex.org/C127313418","wikidata":"https://www.wikidata.org/wiki/Q1069","display_name":"Geology","level":0,"score":0.08922988176345825},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/isbi.2019.8759500","is_oa":false,"landing_page_url":"https://doi.org/10.1109/isbi.2019.8759500","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2019 IEEE 16th International Symposium on Biomedical Imaging (ISBI 2019)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Life in Land","id":"https://metadata.un.org/sdg/15","score":0.6499999761581421}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":10,"referenced_works":["https://openalex.org/W2058224795","https://openalex.org/W2125637308","https://openalex.org/W2130538955","https://openalex.org/W2156010062","https://openalex.org/W2212374820","https://openalex.org/W2795315459","https://openalex.org/W2810700317","https://openalex.org/W2911964244","https://openalex.org/W4293171766","https://openalex.org/W6753032892"],"related_works":["https://openalex.org/W4379231730","https://openalex.org/W4389858081","https://openalex.org/W4324315429","https://openalex.org/W2501551404","https://openalex.org/W4385583601","https://openalex.org/W4298131179","https://openalex.org/W2113201962","https://openalex.org/W2799953226","https://openalex.org/W4366343436","https://openalex.org/W1522196789"],"abstract_inverted_index":{"Manual":[0],"segmentation":[1],"of":[2,30,70,76],"anatomical":[3],"structures":[4],"in":[5,73,79],"3D":[6,102],"imaging":[7],"datasets":[8],"is":[9],"a":[10,27,41,47],"highly":[11],"time-consuming":[12],"process.":[13],"This":[14],"process":[15],"can":[16],"be":[17,33],"sped":[18],"up":[19],"using":[20],"interslice":[21],"interpolation":[22,43],"techniques,":[23],"which":[24],"require":[25],"only":[26],"small":[28],"subset":[29],"slices":[31],"to":[32,52,61,85],"manually":[34],"segmented.":[35],"In":[36],"this":[37],"paper,":[38],"we":[39],"propose":[40],"two-step":[42],"approach":[44],"that":[45],"utilizes":[46],"\u201cbinary":[48],"weighted":[49],"averaging\u201d":[50],"algorithm":[51,89],"interpolate":[53],"contour":[54],"information,":[55],"and":[56,90,100],"the":[57,68,74,86,93],"random":[58,87],"forest":[59],"framework":[60],"perform":[62],"intensity-based":[63],"label":[64],"classification.":[65],"We":[66],"present":[67],"results":[69],"experiments":[71],"performed":[72],"context":[75],"hippocampal":[77],"segmentations":[78,99],"ex":[80],"vivo":[81],"MRI":[82],"scans.":[83],"Compared":[84],"walker":[88],"morphology-based":[91],"interpolation,":[92],"proposed":[94],"method":[95],"produces":[96],"more":[97],"accurate":[98],"smoother":[101],"reconstructions.":[103]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
