{"id":"https://openalex.org/W2896313161","doi":"https://doi.org/10.1109/isbi.2019.8759383","title":"Domain Adaptive Segmentation In Volume Electron Microscopy Imaging","display_name":"Domain Adaptive Segmentation In Volume Electron Microscopy Imaging","publication_year":2019,"publication_date":"2019-04-01","ids":{"openalex":"https://openalex.org/W2896313161","doi":"https://doi.org/10.1109/isbi.2019.8759383","mag":"2896313161"},"language":"en","primary_location":{"id":"doi:10.1109/isbi.2019.8759383","is_oa":false,"landing_page_url":"https://doi.org/10.1109/isbi.2019.8759383","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2019 IEEE 16th International Symposium on Biomedical Imaging (ISBI 2019)","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["arxiv","crossref","datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://arxiv.org/pdf/1810.09734","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5033532387","display_name":"Joris Roels","orcid":"https://orcid.org/0000-0002-2058-8134"},"institutions":[{"id":"https://openalex.org/I32597200","display_name":"Ghent University","ror":"https://ror.org/00cv9y106","country_code":"BE","type":"education","lineage":["https://openalex.org/I32597200"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Joris Roels","raw_affiliation_strings":["Department of Telecommunications and Information Processing, Ghent University / IMEC, Ghent, Belgium","Department of Telecommunications and Information Processing, Ghent University\u2014IMEC, Ghent, Belgium"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Telecommunications and Information Processing, Ghent University / IMEC, Ghent, Belgium","institution_ids":["https://openalex.org/I32597200"]},{"raw_affiliation_string":"Department of Telecommunications and Information Processing, Ghent University\u2014IMEC, Ghent, Belgium","institution_ids":["https://openalex.org/I32597200"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087258300","display_name":"Julian Hennies","orcid":"https://orcid.org/0000-0002-0555-151X"},"institutions":[{"id":"https://openalex.org/I1303691731","display_name":"European Molecular Biology Organization","ror":"https://ror.org/04wfr2810","country_code":"DE","type":"nonprofit","lineage":["https://openalex.org/I1303691731"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Julian Hennies","raw_affiliation_strings":["Cell Biology and Biophysics, EMBL, Heidelberg, Germany","Cell biology and biophysics, EMBL, Heidelberg, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Cell Biology and Biophysics, EMBL, Heidelberg, Germany","institution_ids":["https://openalex.org/I1303691731"]},{"raw_affiliation_string":"Cell biology and biophysics, EMBL, Heidelberg, Germany","institution_ids":["https://openalex.org/I1303691731"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001585713","display_name":"Yvan Saeys","orcid":"https://orcid.org/0000-0002-0415-1506"},"institutions":[{"id":"https://openalex.org/I32597200","display_name":"Ghent University","ror":"https://ror.org/00cv9y106","country_code":"BE","type":"education","lineage":["https://openalex.org/I32597200"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Yvan Saeys","raw_affiliation_strings":["Department of Applied Mathematics, Computer Science and Statistics, Ghent University, Ghent, Belgium","Department of Applied Mathematics Computer Science and Statistics, Ghent University Ghent Belgium"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Applied Mathematics, Computer Science and Statistics, Ghent University, Ghent, Belgium","institution_ids":["https://openalex.org/I32597200"]},{"raw_affiliation_string":"Department of Applied Mathematics Computer Science and Statistics, Ghent University Ghent Belgium","institution_ids":["https://openalex.org/I32597200"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071483672","display_name":"Wilfried Philips","orcid":"https://orcid.org/0000-0003-4456-4353"},"institutions":[{"id":"https://openalex.org/I32597200","display_name":"Ghent University","ror":"https://ror.org/00cv9y106","country_code":"BE","type":"education","lineage":["https://openalex.org/I32597200"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Wilfried Philips","raw_affiliation_strings":["Department of Telecommunications and Information Processing, Ghent University / IMEC, Ghent, Belgium","Department of Telecommunications and Information Processing, Ghent University\u2014IMEC, Ghent, Belgium"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Telecommunications and Information Processing, Ghent University / IMEC, Ghent, Belgium","institution_ids":["https://openalex.org/I32597200"]},{"raw_affiliation_string":"Department of Telecommunications and Information Processing, Ghent University\u2014IMEC, Ghent, Belgium","institution_ids":["https://openalex.org/I32597200"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5038898203","display_name":"Anna Kreshuk","orcid":"https://orcid.org/0000-0003-1334-6388"},"institutions":[{"id":"https://openalex.org/I1303691731","display_name":"European Molecular Biology Organization","ror":"https://ror.org/04wfr2810","country_code":"DE","type":"nonprofit","lineage":["https://openalex.org/I1303691731"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Anna Kreshuk","raw_affiliation_strings":["Cell Biology and Biophysics, EMBL, Heidelberg, Germany","Cell biology and biophysics, EMBL, Heidelberg, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Cell Biology and Biophysics, EMBL, Heidelberg, Germany","institution_ids":["https://openalex.org/I1303691731"]},{"raw_affiliation_string":"Cell biology and biophysics, EMBL, Heidelberg, Germany","institution_ids":["https://openalex.org/I1303691731"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"1519","last_page":"1522"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10857","display_name":"Advanced Electron Microscopy Techniques and Applications","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1315","display_name":"Structural Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10857","display_name":"Advanced Electron Microscopy Techniques and Applications","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1315","display_name":"Structural Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12039","display_name":"Electron and X-Ray Spectroscopy Techniques","score":0.996999979019165,"subfield":{"id":"https://openalex.org/subfields/2508","display_name":"Surfaces, Coatings and Films"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12169","display_name":"Non-Destructive Testing Techniques","score":0.9950000047683716,"subfield":{"id":"https://openalex.org/subfields/2210","display_name":"Mechanical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/segmentation","display_name":"Segmentation","score":0.8046536445617676},{"id":"https://openalex.org/keywords/encoder","display_name":"Encoder","score":0.8013477325439453},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7901357412338257},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.669786810874939},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.6093620657920837},{"id":"https://openalex.org/keywords/domain-adaptation","display_name":"Domain adaptation","score":0.5926907658576965},{"id":"https://openalex.org/keywords/domain","display_name":"Domain (mathematical analysis)","score":0.5623888969421387},{"id":"https://openalex.org/keywords/volume","display_name":"Volume (thermodynamics)","score":0.5597434043884277},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.504599928855896},{"id":"https://openalex.org/keywords/decoding-methods","display_name":"Decoding methods","score":0.49826717376708984},{"id":"https://openalex.org/keywords/computer-vision","display_name":"Computer vision","score":0.48907381296157837},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.46150118112564087},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.13742569088935852},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.07263761758804321}],"concepts":[{"id":"https://openalex.org/C89600930","wikidata":"https://www.wikidata.org/wiki/Q1423946","display_name":"Segmentation","level":2,"score":0.8046536445617676},{"id":"https://openalex.org/C118505674","wikidata":"https://www.wikidata.org/wiki/Q42586063","display_name":"Encoder","level":2,"score":0.8013477325439453},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7901357412338257},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.669786810874939},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.6093620657920837},{"id":"https://openalex.org/C2776434776","wikidata":"https://www.wikidata.org/wiki/Q19246213","display_name":"Domain adaptation","level":3,"score":0.5926907658576965},{"id":"https://openalex.org/C36503486","wikidata":"https://www.wikidata.org/wiki/Q11235244","display_name":"Domain (mathematical analysis)","level":2,"score":0.5623888969421387},{"id":"https://openalex.org/C20556612","wikidata":"https://www.wikidata.org/wiki/Q4469374","display_name":"Volume (thermodynamics)","level":2,"score":0.5597434043884277},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.504599928855896},{"id":"https://openalex.org/C57273362","wikidata":"https://www.wikidata.org/wiki/Q576722","display_name":"Decoding methods","level":2,"score":0.49826717376708984},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.48907381296157837},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.46150118112564087},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.13742569088935852},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.07263761758804321},{"id":"https://openalex.org/C187736073","wikidata":"https://www.wikidata.org/wiki/Q2920921","display_name":"Management","level":1,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C95623464","wikidata":"https://www.wikidata.org/wiki/Q1096149","display_name":"Classifier (UML)","level":2,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0}],"mesh":[],"locations_count":5,"locations":[{"id":"doi:10.1109/isbi.2019.8759383","is_oa":false,"landing_page_url":"https://doi.org/10.1109/isbi.2019.8759383","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2019 IEEE 16th International Symposium on Biomedical Imaging (ISBI 2019)","raw_type":"proceedings-article"},{"id":"pmh:oai:arXiv.org:1810.09734","is_oa":true,"landing_page_url":"http://arxiv.org/abs/1810.09734","pdf_url":"https://arxiv.org/pdf/1810.09734","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},{"id":"pmh:oai:archive.ugent.be:8631341","is_oa":true,"landing_page_url":"http://hdl.handle.net/1854/LU-8631341","pdf_url":null,"source":{"id":"https://openalex.org/S4306400478","display_name":"Ghent University Academic Bibliography (Ghent University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I32597200","host_organization_name":"Ghent University","host_organization_lineage":["https://openalex.org/I32597200"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ISBN: 9781538636411","raw_type":"info:eu-repo/semantics/conferenceObject"},{"id":"doi:10.48550/arxiv.1810.09734","is_oa":true,"landing_page_url":"https://doi.org/10.48550/arxiv.1810.09734","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"Preprint"},{"id":"mag:2896313161","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":null,"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":null}],"best_oa_location":{"id":"pmh:oai:arXiv.org:1810.09734","is_oa":true,"landing_page_url":"http://arxiv.org/abs/1810.09734","pdf_url":"https://arxiv.org/pdf/1810.09734","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2896313161.pdf"},"referenced_works_count":14,"referenced_works":["https://openalex.org/W1901129140","https://openalex.org/W2478454054","https://openalex.org/W2574651848","https://openalex.org/W2775688034","https://openalex.org/W2798453135","https://openalex.org/W2803684675","https://openalex.org/W2963481481","https://openalex.org/W2964288524","https://openalex.org/W6637618735","https://openalex.org/W6683633756","https://openalex.org/W6713955831","https://openalex.org/W6730623217","https://openalex.org/W6751680947","https://openalex.org/W6864221053"],"related_works":["https://openalex.org/W2963820266","https://openalex.org/W3151250393","https://openalex.org/W3138616316","https://openalex.org/W2899547709","https://openalex.org/W2952222533","https://openalex.org/W2990220298","https://openalex.org/W3009707803","https://openalex.org/W3199244555","https://openalex.org/W2924238871","https://openalex.org/W2805605684","https://openalex.org/W3213069569","https://openalex.org/W3088905676","https://openalex.org/W2989970050","https://openalex.org/W2592107721","https://openalex.org/W4226227285","https://openalex.org/W2972339784","https://openalex.org/W2963749200","https://openalex.org/W2996290406","https://openalex.org/W3023772698","https://openalex.org/W2912642089"],"abstract_inverted_index":{"In":[0,89,161],"the":[1,19,45,50,79,114,133,164,169,175],"last":[2],"years,":[3],"automated":[4],"segmentation":[5,85,117],"has":[6,129,167],"become":[7],"a":[8,33,62,105,110],"necessary":[9],"tool":[10],"for":[11],"volume":[12,83],"electron":[13],"microscopy":[14],"(EM)":[15],"imaging.":[16],"So":[17],"far,":[18],"best":[20],"performing":[21],"techniques":[22,98,173],"have":[23,142],"been":[24,130],"largely":[25],"based":[26],"on":[27,53,61,78,132,186],"fully":[28],"supervised":[29],"encoder-decoder":[30,101,116],"CNNs,":[31],"requiring":[32],"substantial":[34],"amount":[35],"of":[36,135,180],"annotated":[37],"images.":[38],"Domain":[39],"Adaptation":[40],"(DA)":[41],"aims":[42],"to":[43,59,99,113,120,149,157],"alleviate":[44],"annotation":[46,70],"burden":[47],"by":[48],"`adapting'":[49],"networks":[51],"trained":[52],"existing":[54],"groundtruth":[55],"data":[56],"(source":[57],"domain)":[58],"work":[60,182],"different":[63],"(target)":[64],"domain":[65],"with":[66],"as":[67,71],"little":[68],"additional":[69],"possible.":[72],"Most":[73],"DA":[74,97,144,172],"research":[75],"is":[76],"focused":[77],"classification":[80,96,171],"task,":[81],"whereas":[82],"EM":[84,139,147],"remains":[86],"rather":[87],"unexplored.":[88],"this":[90],"work,":[91],"we":[92],"extend":[93],"recently":[94],"proposed":[95,165],"an":[100],"layout":[102],"and":[103,123,152,174],"propose":[104],"novel":[106],"method":[107,128,166],"that":[108],"adds":[109],"reconstruction":[111],"decoder":[112],"classical":[115],"in":[118,138],"order":[119],"align":[121],"source":[122],"target":[124],"encoder":[125],"features.":[126],"The":[127],"validated":[131],"task":[134],"segmenting":[136],"mitochondria":[137],"volumes.":[140,160],"We":[141],"performed":[143],"from":[145,153],"brain":[146],"images":[148],"HeLa":[150],"cells":[151],"isotropic":[154],"FIB/SEM":[155],"volumes":[156],"anisotropic":[158],"TEM":[159],"all":[162],"cases,":[163],"outperformed":[168],"extended":[170],"finetuning":[176],"baseline.":[177],"An":[178],"implementation":[179],"our":[181],"can":[183],"be":[184],"found":[185],"https://github.com/JorisRoels/domain-adaptive-segmentation.":[187]},"counts_by_year":[{"year":2019,"cited_by_count":1}],"updated_date":"2026-07-14T23:27:15.235271","created_date":"2025-10-10T00:00:00"}
