{"id":"https://openalex.org/W2916077317","doi":"https://doi.org/10.1109/isbi.2019.8759328","title":"3D High-Resolution Cardiac Segmentation Reconstruction From 2D Views Using Conditional Variational Autoencoders","display_name":"3D High-Resolution Cardiac Segmentation Reconstruction From 2D Views Using Conditional Variational Autoencoders","publication_year":2019,"publication_date":"2019-04-01","ids":{"openalex":"https://openalex.org/W2916077317","doi":"https://doi.org/10.1109/isbi.2019.8759328","mag":"2916077317"},"language":"en","primary_location":{"id":"doi:10.1109/isbi.2019.8759328","is_oa":false,"landing_page_url":"https://doi.org/10.1109/isbi.2019.8759328","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2019 IEEE 16th International Symposium on Biomedical Imaging (ISBI 2019)","raw_type":"proceedings-article"},"type":"preprint","indexed_in":["arxiv","crossref","datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://arxiv.org/pdf/1902.11000","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5016254297","display_name":"Carlo Biffi","orcid":"https://orcid.org/0000-0002-4913-7441"},"institutions":[{"id":"https://openalex.org/I4210154413","display_name":"Institute of Group Analysis","ror":"https://ror.org/05bnh6b29","country_code":"GB","type":"education","lineage":["https://openalex.org/I4210154413"]},{"id":"https://openalex.org/I4210161592","display_name":"MRC London Institute of Medical Sciences","ror":"https://ror.org/05p1n6x86","country_code":"GB","type":"facility","lineage":["https://openalex.org/I4210161592","https://openalex.org/I47508984"]},{"id":"https://openalex.org/I47508984","display_name":"Imperial College London","ror":"https://ror.org/041kmwe10","country_code":"GB","type":"education","lineage":["https://openalex.org/I47508984"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Carlo Biffi","raw_affiliation_strings":["Imperial College London, MRC London Institute of Medical Sciences, UK","Biomedical Image Analysis Group Imperial College London UK"],"affiliations":[{"raw_affiliation_string":"Imperial College London, MRC London Institute of Medical Sciences, UK","institution_ids":["https://openalex.org/I4210161592","https://openalex.org/I47508984"]},{"raw_affiliation_string":"Biomedical Image Analysis Group Imperial College London UK","institution_ids":["https://openalex.org/I4210154413"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051073355","display_name":"Juan J. Cerrolaza","orcid":null},"institutions":[{"id":"https://openalex.org/I4210154413","display_name":"Institute of Group Analysis","ror":"https://ror.org/05bnh6b29","country_code":"GB","type":"education","lineage":["https://openalex.org/I4210154413"]},{"id":"https://openalex.org/I47508984","display_name":"Imperial College London","ror":"https://ror.org/041kmwe10","country_code":"GB","type":"education","lineage":["https://openalex.org/I47508984"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Juan J. Cerrolaza","raw_affiliation_strings":["Biomedical Image Analysis Group, Imperial College London, UK","Biomedical Image Analysis Group Imperial College London UK"],"affiliations":[{"raw_affiliation_string":"Biomedical Image Analysis Group, Imperial College London, UK","institution_ids":["https://openalex.org/I4210154413","https://openalex.org/I47508984"]},{"raw_affiliation_string":"Biomedical Image Analysis Group Imperial College London UK","institution_ids":["https://openalex.org/I4210154413"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077334337","display_name":"Giacomo Tarroni","orcid":"https://orcid.org/0000-0002-0341-6138"},"institutions":[{"id":"https://openalex.org/I4210154413","display_name":"Institute of Group Analysis","ror":"https://ror.org/05bnh6b29","country_code":"GB","type":"education","lineage":["https://openalex.org/I4210154413"]},{"id":"https://openalex.org/I47508984","display_name":"Imperial College London","ror":"https://ror.org/041kmwe10","country_code":"GB","type":"education","lineage":["https://openalex.org/I47508984"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Giacomo Tarroni","raw_affiliation_strings":["Biomedical Image Analysis Group, Imperial College London, UK","Biomedical Image Analysis Group Imperial College London UK"],"affiliations":[{"raw_affiliation_string":"Biomedical Image Analysis Group, Imperial College London, UK","institution_ids":["https://openalex.org/I4210154413","https://openalex.org/I47508984"]},{"raw_affiliation_string":"Biomedical Image Analysis Group Imperial College London UK","institution_ids":["https://openalex.org/I4210154413"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071762687","display_name":"Antonio de Marvao","orcid":"https://orcid.org/0000-0001-9095-5887"},"institutions":[{"id":"https://openalex.org/I4210161592","display_name":"MRC London Institute of Medical Sciences","ror":"https://ror.org/05p1n6x86","country_code":"GB","type":"facility","lineage":["https://openalex.org/I4210161592","https://openalex.org/I47508984"]},{"id":"https://openalex.org/I47508984","display_name":"Imperial College London","ror":"https://ror.org/041kmwe10","country_code":"GB","type":"education","lineage":["https://openalex.org/I47508984"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Antonio de Marvao","raw_affiliation_strings":["Imperial College London, MRC London Institute of Medical Sciences, UK"],"affiliations":[{"raw_affiliation_string":"Imperial College London, MRC London Institute of Medical Sciences, UK","institution_ids":["https://openalex.org/I4210161592","https://openalex.org/I47508984"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071216592","display_name":"Stuart A. Cook","orcid":"https://orcid.org/0000-0001-6628-194X"},"institutions":[{"id":"https://openalex.org/I4210161592","display_name":"MRC London Institute of Medical Sciences","ror":"https://ror.org/05p1n6x86","country_code":"GB","type":"facility","lineage":["https://openalex.org/I4210161592","https://openalex.org/I47508984"]},{"id":"https://openalex.org/I47508984","display_name":"Imperial College London","ror":"https://ror.org/041kmwe10","country_code":"GB","type":"education","lineage":["https://openalex.org/I47508984"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Stuart A. Cook","raw_affiliation_strings":["Imperial College London, MRC London Institute of Medical Sciences, UK"],"affiliations":[{"raw_affiliation_string":"Imperial College London, MRC London Institute of Medical Sciences, UK","institution_ids":["https://openalex.org/I4210161592","https://openalex.org/I47508984"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068696789","display_name":"Declan P. O\u2019Regan","orcid":"https://orcid.org/0000-0002-0691-0270"},"institutions":[{"id":"https://openalex.org/I4210161592","display_name":"MRC London Institute of Medical Sciences","ror":"https://ror.org/05p1n6x86","country_code":"GB","type":"facility","lineage":["https://openalex.org/I4210161592","https://openalex.org/I47508984"]},{"id":"https://openalex.org/I47508984","display_name":"Imperial College London","ror":"https://ror.org/041kmwe10","country_code":"GB","type":"education","lineage":["https://openalex.org/I47508984"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Declan P. O'Regan","raw_affiliation_strings":["Imperial College London, MRC London Institute of Medical Sciences, UK"],"affiliations":[{"raw_affiliation_string":"Imperial College London, MRC London Institute of Medical Sciences, UK","institution_ids":["https://openalex.org/I4210161592","https://openalex.org/I47508984"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5006461848","display_name":"Daniel Rueckert","orcid":"https://orcid.org/0000-0002-5683-5889"},"institutions":[{"id":"https://openalex.org/I4210154413","display_name":"Institute of Group Analysis","ror":"https://ror.org/05bnh6b29","country_code":"GB","type":"education","lineage":["https://openalex.org/I4210154413"]},{"id":"https://openalex.org/I47508984","display_name":"Imperial College London","ror":"https://ror.org/041kmwe10","country_code":"GB","type":"education","lineage":["https://openalex.org/I47508984"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Daniel Rueckert","raw_affiliation_strings":["Biomedical Image Analysis Group, Imperial College London, UK","Biomedical Image Analysis Group Imperial College London UK"],"affiliations":[{"raw_affiliation_string":"Biomedical Image Analysis Group, Imperial College London, UK","institution_ids":["https://openalex.org/I4210154413","https://openalex.org/I47508984"]},{"raw_affiliation_string":"Biomedical Image Analysis Group Imperial College London UK","institution_ids":["https://openalex.org/I4210154413"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5016254297"],"corresponding_institution_ids":["https://openalex.org/I4210154413","https://openalex.org/I4210161592","https://openalex.org/I47508984"],"apc_list":null,"apc_paid":null,"fwci":0.6439,"has_fulltext":true,"cited_by_count":5,"citation_normalized_percentile":{"value":0.71116922,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":96},"biblio":{"volume":null,"issue":null,"first_page":"1643","last_page":"1646"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10172","display_name":"Cardiac Valve Diseases and Treatments","score":0.994700014591217,"subfield":{"id":"https://openalex.org/subfields/2705","display_name":"Cardiology and Cardiovascular Medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10172","display_name":"Cardiac Valve Diseases and Treatments","score":0.994700014591217,"subfield":{"id":"https://openalex.org/subfields/2705","display_name":"Cardiology and Cardiovascular Medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10378","display_name":"Advanced MRI Techniques and Applications","score":0.9925000071525574,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T12422","display_name":"Radiomics and Machine Learning in Medical Imaging","score":0.9872000217437744,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/segmentation","display_name":"Segmentation","score":0.8016940951347351},{"id":"https://openalex.org/keywords/autoencoder","display_name":"Autoencoder","score":0.7522493600845337},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.7195054888725281},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5961732864379883},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.5220884680747986},{"id":"https://openalex.org/keywords/computer-vision","display_name":"Computer vision","score":0.4978806972503662},{"id":"https://openalex.org/keywords/resolution","display_name":"Resolution (logic)","score":0.4347139298915863},{"id":"https://openalex.org/keywords/superresolution","display_name":"Superresolution","score":0.4344540238380432},{"id":"https://openalex.org/keywords/image","display_name":"Image (mathematics)","score":0.37909460067749023},{"id":"https://openalex.org/keywords/deep-learning","display_name":"Deep learning","score":0.3270907998085022}],"concepts":[{"id":"https://openalex.org/C89600930","wikidata":"https://www.wikidata.org/wiki/Q1423946","display_name":"Segmentation","level":2,"score":0.8016940951347351},{"id":"https://openalex.org/C101738243","wikidata":"https://www.wikidata.org/wiki/Q786435","display_name":"Autoencoder","level":3,"score":0.7522493600845337},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.7195054888725281},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5961732864379883},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.5220884680747986},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.4978806972503662},{"id":"https://openalex.org/C138268822","wikidata":"https://www.wikidata.org/wiki/Q1051925","display_name":"Resolution (logic)","level":2,"score":0.4347139298915863},{"id":"https://openalex.org/C141239990","wikidata":"https://www.wikidata.org/wiki/Q957423","display_name":"Superresolution","level":3,"score":0.4344540238380432},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.37909460067749023},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.3270907998085022}],"mesh":[],"locations_count":6,"locations":[{"id":"doi:10.1109/isbi.2019.8759328","is_oa":false,"landing_page_url":"https://doi.org/10.1109/isbi.2019.8759328","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2019 IEEE 16th International Symposium on Biomedical Imaging (ISBI 2019)","raw_type":"proceedings-article"},{"id":"pmh:oai:arXiv.org:1902.11000","is_oa":true,"landing_page_url":"http://arxiv.org/abs/1902.11000","pdf_url":"https://arxiv.org/pdf/1902.11000","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},{"id":"pmh:oai:openaccess.city.ac.uk:23146","is_oa":true,"landing_page_url":"https://openaccess.city.ac.uk/view/creators_id/giacomo=2Etarroni.html>","pdf_url":"https://openaccess.city.ac.uk/id/eprint/23146/1/1902.11000v1.pdf","source":{"id":"https://openalex.org/S4306401940","display_name":"City Research Online (City University London)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I180825142","host_organization_name":"City, University of London","host_organization_lineage":["https://openalex.org/I180825142"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"PeerReviewed"},{"id":"pmh:oai:spiral.imperial.ac.uk:10044/1/73720","is_oa":false,"landing_page_url":"http://hdl.handle.net/10044/1/73720","pdf_url":null,"source":{"id":"https://openalex.org/S4306401396","display_name":"Spiral (Imperial College London)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I47508984","host_organization_name":"Imperial College London","host_organization_lineage":["https://openalex.org/I47508984"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"16th IEEE International Symposium on Biomedical Imaging (ISBI)","raw_type":"Conference Paper"},{"id":"doi:10.48550/arxiv.1902.11000","is_oa":true,"landing_page_url":"https://doi.org/10.48550/arxiv.1902.11000","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article"},{"id":"mag:2916077317","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":null,"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":null}],"best_oa_location":{"id":"pmh:oai:arXiv.org:1902.11000","is_oa":true,"landing_page_url":"http://arxiv.org/abs/1902.11000","pdf_url":"https://arxiv.org/pdf/1902.11000","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G6541509879","display_name":null,"funder_award_id":"NH/17/1/32725","funder_id":"https://openalex.org/F4320319992","funder_display_name":"British Heart Foundation"},{"id":"https://openalex.org/G6550315070","display_name":null,"funder_award_id":"RE/13/4/30184","funder_id":"https://openalex.org/F4320319992","funder_display_name":"British Heart Foundation"}],"funders":[{"id":"https://openalex.org/F4320319990","display_name":"National Institute for Health and Care Research","ror":"https://ror.org/0187kwz08"},{"id":"https://openalex.org/F4320319992","display_name":"British Heart Foundation","ror":"https://ror.org/02wdwnk04"},{"id":"https://openalex.org/F4320320283","display_name":"Imperial College London","ror":"https://ror.org/041kmwe10"},{"id":"https://openalex.org/F4320320284","display_name":"Imperial College Healthcare NHS Trust","ror":"https://ror.org/056ffv270"},{"id":"https://openalex.org/F4320334626","display_name":"Medical Research Council","ror":"https://ror.org/03x94j517"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":9,"referenced_works":["https://openalex.org/W1872336954","https://openalex.org/W1987898978","https://openalex.org/W2169552569","https://openalex.org/W2467604901","https://openalex.org/W2691730529","https://openalex.org/W2886612741","https://openalex.org/W2889648615","https://openalex.org/W2964137676","https://openalex.org/W6703199735"],"related_works":["https://openalex.org/W2960424732","https://openalex.org/W2914322520","https://openalex.org/W2755973499","https://openalex.org/W3180798815","https://openalex.org/W3092903205","https://openalex.org/W3111746968","https://openalex.org/W2952757856","https://openalex.org/W2979797290","https://openalex.org/W3011573465","https://openalex.org/W2807572416","https://openalex.org/W3165289746","https://openalex.org/W3104785286","https://openalex.org/W2766187417","https://openalex.org/W3097855346","https://openalex.org/W2914545845","https://openalex.org/W2979359868","https://openalex.org/W2957228719","https://openalex.org/W2888570268","https://openalex.org/W2794077123","https://openalex.org/W2617063304"],"abstract_inverted_index":{"Accurate":[0],"segmentation":[1,119],"of":[2,15,58,81,96,120,137],"heart":[3],"structures":[4],"imaged":[5],"by":[6,56],"cardiac":[7],"MR":[8,19],"is":[9,89],"key":[10],"for":[11,42],"the":[12,115],"quantitative":[13],"analysis":[14],"pathology.":[16],"High-resolution":[17],"3D":[18,82,116],"sequences":[20,49],"enable":[21],"whole-heart":[22,59],"structural":[23],"imaging":[24],"but":[25,53],"are":[26,39,50,54],"time-consuming,":[27],"expensive":[28],"to":[29,76],"acquire":[30],"and":[31,61,99,141],"they":[32],"often":[33],"require":[34],"long":[35],"breath":[36],"holds":[37],"that":[38],"not":[40],"suitable":[41],"patients.":[43],"Consequently,":[44],"multiplanar":[45],"breath-hold":[46],"2D":[47,93,108],"cines":[48],"standard":[51],"practice":[52],"disadvantaged":[55],"lack":[57],"coverage":[60],"low":[62],"through-plane":[63],"resolution.":[64],"To":[65],"address":[66],"this,":[67],"we":[68],"propose":[69],"a":[70,78,121],"conditional":[71],"variational":[72],"autoencoder":[73],"architecture":[74],"able":[75],"learn":[77],"generative":[79],"model":[80,111,131],"high-resolution":[83,117],"left":[84],"ventricular":[85],"(LV)":[86],"segmentations":[87,95],"which":[88],"conditioned":[90],"on":[91,125],"three":[92,107],"LV":[94,118],"one":[97],"short-axis":[98],"two":[100],"long-axis":[101],"images.":[102],"By":[103],"only":[104],"employing":[105],"these":[106],"segmentations,":[109],"our":[110,130],"can":[112],"efficiently":[113],"reconstruct":[114],"subject.":[122],"When":[123],"evaluated":[124],"400":[126],"unseen":[127],"healthy":[128],"volunteers,":[129],"yielded":[132],"an":[133],"average":[134],"Dice":[135,146],"score":[136,147],"87.92":[138],"\u00b1":[139,150],"0.15":[140],"outperformed":[142],"competing":[143],"architectures":[144],"(TL-net,":[145],"=":[148,153],"82.60":[149],"0.23,":[151],"p":[152],"2.2":[154],"\u00b7":[155],"10":[156],"<sup":[157],"xmlns:mml=\"http://www.w3.org/1998/Math/MathML\"":[158],"xmlns:xlink=\"http://www.w3.org/1999/xlink\">-16</sup>":[159],").":[160]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":2}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
